Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06335

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,318,969	+		DZA65_RS06325	0.82	-1.3
1,318,969	+		DZA65_RS06325	0.82	-0.4
1,318,969	+		DZA65_RS06325	0.82	+0.2
1,318,969	+		DZA65_RS06325	0.82	-0.3
1,318,969	+		DZA65_RS06325	0.82	-0.8
1,318,969	+		DZA65_RS06325	0.82	+1.3
1,318,969	+		DZA65_RS06325	0.82	+0.1
1,318,969	+		DZA65_RS06325	0.82	-0.4
1,318,970	-		DZA65_RS06325	0.82	+1.3
1,318,970	-		DZA65_RS06325	0.82	-1.8
1,318,970	-		DZA65_RS06325	0.82	-1.1
1,318,970	-		DZA65_RS06325	0.82	+0.5
1,318,970	-		DZA65_RS06325	0.82	-0.3
1,318,970	-		DZA65_RS06325	0.82	-1.3
1,318,970	-		DZA65_RS06325	0.82	+1.0
1,318,970	-		DZA65_RS06325	0.82	-1.5
1,318,970	-		DZA65_RS06325	0.82	+0.9
1,319,062	+		DZA65_RS06325	0.90	+0.3
1,319,062	+		DZA65_RS06325	0.90	+0.8
1,319,064	+		DZA65_RS06325	0.90	-0.9
1,319,065	-				+0.9
1,319,070	+				-0.3
1,319,127	+				-0.8
1,319,127	+				+2.3
1,319,128	-				-0.6
1,319,143	+				-2.0
1,319,182	+				-0.5
1,319,182	+				-1.6
1,319,182	+				-0.0
1,319,182	+				-1.2
1,319,183	-				-0.7
1,319,234	+				-0.7
1,319,234	+				-0.2
1,319,234	+				-0.9
1,319,234	+				+1.9
1,319,234	+				-0.4
1,319,235	-				+0.7
1,319,235	-				-0.8
1,319,235	-				-0.7
1,319,235	-				+0.1
1,319,235	-				-0.7
1,319,261	-				-0.2
1,319,301	+				-1.0
1,319,302	-				+0.8
1,319,317	-				-0.5
1,319,321	-				+0.3
1,319,340	+				+0.3
1,319,341	-				-1.0
1,319,346	-				-1.5
1,319,359	-				+0.1
1,319,359	-				-0.3
1,319,359	-				+0.1
1,319,359	-				-0.1
1,319,412	+		DZA65_RS06330	0.13	+1.3
1,319,412	+		DZA65_RS06330	0.13	+1.1
1,319,413	-		DZA65_RS06330	0.13	+0.6
1,319,413	-		DZA65_RS06330	0.13	-1.7
1,319,429	-		DZA65_RS06330	0.16	-0.3
1,319,438	+		DZA65_RS06330	0.18	-0.1
1,319,438	+		DZA65_RS06330	0.18	+0.4
1,319,438	+		DZA65_RS06330	0.18	+0.4
1,319,438	+		DZA65_RS06330	0.18	+0.2
1,319,438	+		DZA65_RS06330	0.18	+0.5
1,319,438	+		DZA65_RS06330	0.18	+0.3
1,319,438	+		DZA65_RS06330	0.18	-0.7
1,319,438	+		DZA65_RS06330	0.18	-0.1
1,319,438	+		DZA65_RS06330	0.18	+1.0
1,319,438	+		DZA65_RS06330	0.18	-0.3
1,319,439	-		DZA65_RS06330	0.18	-1.1
1,319,439	-		DZA65_RS06330	0.18	-1.6
1,319,439	-		DZA65_RS06330	0.18	-0.3
1,319,439	-		DZA65_RS06330	0.18	-0.5
1,319,439	-		DZA65_RS06330	0.18	-0.5
1,319,439	-		DZA65_RS06330	0.18	-1.7
1,319,439	-		DZA65_RS06330	0.18	-0.4
1,319,439	-		DZA65_RS06330	0.18	+0.3
1,319,439	-		DZA65_RS06330	0.18	-0.3
1,319,439	-		DZA65_RS06330	0.18	-0.0
1,319,439	-		DZA65_RS06330	0.18	+1.3
1,319,439	-		DZA65_RS06330	0.18	-0.8
1,319,439	-		DZA65_RS06330	0.18	+0.3
1,319,439	-		DZA65_RS06330	0.18	+0.5
1,319,439	-		DZA65_RS06330	0.18	+0.3
1,319,439	-		DZA65_RS06330	0.18	+0.1
1,319,472	-		DZA65_RS06330	0.24	-1.3
1,319,472	-		DZA65_RS06330	0.24	-1.6
1,319,508	+		DZA65_RS06330	0.31	-1.0
1,319,509	-		DZA65_RS06330	0.31	+0.4
1,319,509	-		DZA65_RS06330	0.31	-1.4
1,319,527	+		DZA65_RS06330	0.34	-0.8
1,319,528	-		DZA65_RS06330	0.34	-0.5
1,319,546	+		DZA65_RS06330	0.38	+0.3
1,319,554	-		DZA65_RS06330	0.39	+0.5
1,319,554	-		DZA65_RS06330	0.39	-1.0
1,319,583	+		DZA65_RS06330	0.45	+0.7
1,319,583	+		DZA65_RS06330	0.45	+1.1
1,319,583	+		DZA65_RS06330	0.45	-0.6
1,319,583	+		DZA65_RS06330	0.45	-1.5
1,319,583	+		DZA65_RS06330	0.45	+0.7
1,319,583	+		DZA65_RS06330	0.45	+0.6
1,319,584	-		DZA65_RS06330	0.45	-0.5
1,319,584	-		DZA65_RS06330	0.45	-0.7
1,319,584	-		DZA65_RS06330	0.45	-0.2
1,319,584	-		DZA65_RS06330	0.45	-0.7
1,319,584	-		DZA65_RS06330	0.45	-0.2
1,319,584	-		DZA65_RS06330	0.45	-0.1
1,319,584	-		DZA65_RS06330	0.45	-0.3
1,319,584	-		DZA65_RS06330	0.45	+0.5
1,319,588	-		DZA65_RS06330	0.45	+0.0
1,319,661	-		DZA65_RS06330	0.59	+0.0
1,319,661	-		DZA65_RS06330	0.59	-1.2
1,319,661	-		DZA65_RS06330	0.59	+1.3
1,319,661	-		DZA65_RS06330	0.59	-0.6
1,319,673	+		DZA65_RS06330	0.61	-0.9
1,319,673	+		DZA65_RS06330	0.61	+1.3
1,319,673	+		DZA65_RS06330	0.61	+0.7
1,319,714	-		DZA65_RS06330	0.69	+3.1
1,319,714	-		DZA65_RS06330	0.69	-0.6
1,319,714	-		DZA65_RS06330	0.69	+1.6
1,319,718	+		DZA65_RS06330	0.70	-0.2
1,319,718	+		DZA65_RS06330	0.70	+0.7
1,319,719	-		DZA65_RS06330	0.70	+0.0
1,319,719	-		DZA65_RS06330	0.70	-1.4
1,319,719	-		DZA65_RS06330	0.70	+0.3
1,319,719	-		DZA65_RS06330	0.70	-1.8
1,319,719	-		DZA65_RS06330	0.70	-0.5
1,319,760	+		DZA65_RS06330	0.77	-0.8
1,319,760	+		DZA65_RS06330	0.77	+0.2
1,319,760	+		DZA65_RS06330	0.77	+0.3
1,319,760	+		DZA65_RS06330	0.77	-0.1
1,319,761	-		DZA65_RS06330	0.78	+0.3
1,319,761	-		DZA65_RS06330	0.78	-0.1
1,319,761	-		DZA65_RS06330	0.78	-0.9
1,319,780	-		DZA65_RS06330	0.81	+0.2
1,319,780	-		DZA65_RS06330	0.81	+0.8
1,319,785	-		DZA65_RS06330	0.82	-1.0
1,319,805	+		DZA65_RS06330	0.86	-0.8
1,319,816	+		DZA65_RS06330	0.88	-1.0
1,319,816	+		DZA65_RS06330	0.88	+2.3
1,319,816	+		DZA65_RS06330	0.88	+0.0
1,319,817	-		DZA65_RS06330	0.88	-1.5
1,319,817	-		DZA65_RS06330	0.88	+1.0
1,319,817	-		DZA65_RS06330	0.88	-0.0
1,319,817	-		DZA65_RS06330	0.88	+1.3
1,319,817	-		DZA65_RS06330	0.88	+0.5
1,319,840	+				+1.6
1,319,840	+				+0.1
1,319,840	+				-1.3
1,319,842	+				-1.9
1,319,842	+				-0.9
1,319,843	-				+0.3
1,319,843	-				+2.3
1,319,843	-				+0.3
1,319,848	+				-0.0
1,319,848	+				-0.6
1,319,848	+				-0.4
1,319,848	+				+0.7
1,319,849	-				-0.3
1,319,849	-				-1.9
1,319,856	+				+1.3
1,319,856	+				+0.1
1,319,856	+				+0.5
1,319,856	+				-1.3
1,319,857	-				+0.1
1,319,871	+				-0.1
1,319,871	+				+0.3
1,319,871	+				-1.4
1,319,871	+				-0.7
1,319,872	-				-0.7
1,319,875	+				-1.0
1,319,875	+				-0.3
1,319,875	+				-2.9
1,319,876	-				+1.3
1,319,876	-				-1.0
1,319,876	-				+0.3
1,319,876	-				+0.7
1,319,876	-				+0.7
1,319,876	-				-1.2
1,319,876	-				+0.2
1,319,876	-				+1.3
1,319,876	-				+0.0
1,319,876	-				+2.1
1,319,876	-				-0.9
1,319,876	-				+0.3
1,319,876	-				+1.3
1,319,951	+		DZA65_RS06335	0.29	-0.7
1,319,952	-		DZA65_RS06335	0.29	-0.9
1,319,952	-		DZA65_RS06335	0.29	+0.0
1,320,031	+		DZA65_RS06335	0.54	-1.3
1,320,031	+		DZA65_RS06335	0.54	+0.5
1,320,037	+		DZA65_RS06335	0.56	-0.5
1,320,038	-		DZA65_RS06335	0.57	-0.7
1,320,142	+				-0.7
1,320,161	+				+0.1
1,320,172	+				+1.3
1,320,193	+				-0.6
1,320,194	-				-1.9
1,320,307	-				-0.2
1,320,342	+				+1.0
1,320,351	+				+0.2
1,320,357	-				-1.4
1,320,378	-				+1.4
1,320,383	-				-0.9
1,320,383	-				+1.8
1,320,383	-				-1.4
1,320,384	+				-0.3
1,320,384	+				-0.0
1,320,385	-				-0.1
1,320,392	+				-0.0
1,320,392	+				-1.4
1,320,420	-				-0.7
1,320,440	+				-0.9
1,320,441	-				-0.3
1,320,527	+		DZA65_RS06340	0.21	+0.8
1,320,527	+		DZA65_RS06340	0.21	-0.3
1,320,527	+		DZA65_RS06340	0.21	-1.3
1,320,527	+		DZA65_RS06340	0.21	+0.2
1,320,527	+		DZA65_RS06340	0.21	+1.0
1,320,527	+		DZA65_RS06340	0.21	+1.0
1,320,527	+		DZA65_RS06340	0.21	-0.6
1,320,527	+		DZA65_RS06340	0.21	+0.7
1,320,527	+		DZA65_RS06340	0.21	-1.7
1,320,527	+		DZA65_RS06340	0.21	-2.0
1,320,527	+		DZA65_RS06340	0.21	+0.7
1,320,527	+		DZA65_RS06340	0.21	+0.9
1,320,527	+		DZA65_RS06340	0.21	-0.5
1,320,527	+				+0.3
1,320,527	+		DZA65_RS06340	0.21	+0.3
1,320,527	+		DZA65_RS06340	0.21	-1.8
1,320,528	-		DZA65_RS06340	0.21	-0.3
1,320,528	-		DZA65_RS06340	0.21	+0.5
1,320,528	-		DZA65_RS06340	0.21	+0.1
1,320,528	-		DZA65_RS06340	0.21	-0.8
1,320,528	-		DZA65_RS06340	0.21	-0.2
1,320,528	-		DZA65_RS06340	0.21	-1.5
1,320,528	-		DZA65_RS06340	0.21	-0.5
1,320,528	-		DZA65_RS06340	0.21	-0.2
1,320,528	-		DZA65_RS06340	0.21	+1.0
1,320,528	-		DZA65_RS06340	0.21	-0.7
1,320,528	-		DZA65_RS06340	0.21	-0.1
1,320,528	-		DZA65_RS06340	0.21	+0.4
1,320,528	-		DZA65_RS06340	0.21	-1.5
1,320,528	-		DZA65_RS06340	0.21	+0.8
1,320,528	-		DZA65_RS06340	0.21	-0.1
1,320,528	-		DZA65_RS06340	0.21	-1.0
1,320,531	+		DZA65_RS06340	0.22	+0.5
1,320,531	+		DZA65_RS06340	0.22	-0.3
1,320,531	+		DZA65_RS06340	0.22	-0.1
1,320,531	+		DZA65_RS06340	0.22	-1.0
1,320,531	+		DZA65_RS06340	0.22	+0.2
1,320,531	+		DZA65_RS06340	0.22	-0.0
1,320,531	+		DZA65_RS06340	0.22	-1.5
1,320,531	+		DZA65_RS06340	0.22	+1.3
1,320,531	+				+0.6
1,320,531	+		DZA65_RS06340	0.22	-0.6
1,320,532	-		DZA65_RS06340	0.23	-0.2
1,320,532	-		DZA65_RS06340	0.23	+0.6
1,320,532	-		DZA65_RS06340	0.23	+0.7
1,320,532	-		DZA65_RS06340	0.23	-0.8
1,320,532	-		DZA65_RS06340	0.23	-0.0
1,320,537	+		DZA65_RS06340	0.24	-0.5
1,320,537	+		DZA65_RS06340	0.24	-0.1
1,320,538	-		DZA65_RS06340	0.25	-2.2
1,320,549	+		DZA65_RS06340	0.29	+0.1
1,320,550	-		DZA65_RS06340	0.29	-2.5
1,320,550	-		DZA65_RS06340	0.29	-0.8
1,320,550	-		DZA65_RS06340	0.29	+0.7
1,320,577	+		DZA65_RS06340	0.39	-0.5
1,320,577	+		DZA65_RS06340	0.39	+0.6
1,320,577	+		DZA65_RS06340	0.39	+0.6
1,320,577	+		DZA65_RS06340	0.39	-1.5
1,320,577	+		DZA65_RS06340	0.39	-0.9
1,320,578	-		DZA65_RS06340	0.40	+0.8
1,320,582	+		DZA65_RS06340	0.41	-0.7
1,320,696	+		DZA65_RS06340	0.83	+0.3
1,320,723	+				-0.6
1,320,724	-				-0.9
1,320,724	-				-0.3
1,320,741	-				-1.7
1,320,741	-				+0.1
1,320,741	-				+0.3
1,320,741	-				-0.4
1,320,741	-				+0.5
1,320,792	+				-0.6
1,320,792	+				-0.3
1,320,792	+				-0.1
1,320,792	+				-0.5
1,320,793	-				-0.5
1,320,847	+				+0.2
1,320,848	-				+0.2
1,320,848	-				-0.0
1,320,848	-				+1.9
1,320,848	-				+1.6
1,320,859	+				-1.3
1,320,859	+				-0.9
1,320,859	+				-0.7
1,320,860	-				-0.7
1,320,860	-				+0.3
1,320,860	-				-0.5
1,320,874	+				-0.3
1,321,012	-		DZA65_RS06345	0.20	-0.7
1,321,171	-		DZA65_RS06345	0.38	-0.3