Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04795 and DZA65_RS04800 are separated by 140 nucleotides DZA65_RS04800 and DZA65_RS04805 are separated by 267 nucleotides
DZA65_RS04795: DZA65_RS04795 - hypothetical protein, at 995,164 to 995,352
_RS04795
DZA65_RS04800: DZA65_RS04800 - integrase arm-type DNA-binding domain-containing protein, at 995,493 to 996,692
_RS04800
DZA65_RS04805: DZA65_RS04805 - ParA family protein, at 996,960 to 997,847
_RS04805
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 994.497 kb on - strand at 994.497 kb on - strand at 994.549 kb on + strand at 994.549 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.559 kb on + strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.560 kb on - strand at 994.666 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.766 kb on - strand at 994.800 kb on + strand at 994.800 kb on + strand at 994.801 kb on - strand at 994.801 kb on - strand at 994.801 kb on - strand at 995.013 kb on - strand at 995.013 kb on - strand at 995.057 kb on - strand at 995.081 kb on + strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.086 kb on - strand at 995.091 kb on - strand at 995.120 kb on + strand at 995.120 kb on + strand at 995.120 kb on + strand at 995.139 kb on + strand at 995.142 kb on + strand at 995.170 kb on - strand at 995.206 kb on + strand, within DZA65_RS04795 at 995.213 kb on + strand, within DZA65_RS04795 at 995.214 kb on - strand, within DZA65_RS04795 at 995.226 kb on - strand, within DZA65_RS04795 at 995.226 kb on - strand, within DZA65_RS04795 at 995.267 kb on + strand, within DZA65_RS04795 at 995.268 kb on - strand, within DZA65_RS04795 at 995.371 kb on - strand at 995.385 kb on + strand at 995.389 kb on - strand at 995.421 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.559 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.561 kb on - strand at 995.648 kb on + strand, within DZA65_RS04800 at 995.655 kb on + strand, within DZA65_RS04800 at 995.656 kb on - strand, within DZA65_RS04800 at 995.698 kb on + strand, within DZA65_RS04800 at 995.699 kb on - strand, within DZA65_RS04800 at 995.699 kb on - strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.756 kb on + strand, within DZA65_RS04800 at 995.757 kb on - strand, within DZA65_RS04800 at 995.757 kb on - strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.927 kb on + strand, within DZA65_RS04800 at 995.928 kb on - strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.929 kb on + strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 995.930 kb on - strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.037 kb on + strand, within DZA65_RS04800 at 996.038 kb on - strand, within DZA65_RS04800 at 996.038 kb on - strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.145 kb on + strand, within DZA65_RS04800 at 996.230 kb on + strand, within DZA65_RS04800 at 996.397 kb on + strand, within DZA65_RS04800 at 996.397 kb on + strand, within DZA65_RS04800 at 996.397 kb on + strand, within DZA65_RS04800 at 996.398 kb on - strand, within DZA65_RS04800 at 996.398 kb on - strand, within DZA65_RS04800 at 996.518 kb on + strand, within DZA65_RS04800 at 996.518 kb on + strand, within DZA65_RS04800 at 996.518 kb on + strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.519 kb on - strand, within DZA65_RS04800 at 996.580 kb on + strand at 996.580 kb on + strand at 996.581 kb on - strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.585 kb on + strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.586 kb on - strand at 996.602 kb on + strand at 996.602 kb on + strand at 996.602 kb on + strand at 996.602 kb on + strand at 996.606 kb on + strand at 996.606 kb on + strand at 996.616 kb on + strand at 996.617 kb on - strand at 996.617 kb on - strand at 996.617 kb on - strand at 996.644 kb on - strand at 996.687 kb on + strand at 996.687 kb on + strand at 996.802 kb on - strand at 996.802 kb on - strand at 996.820 kb on - strand at 996.840 kb on - strand at 996.908 kb on + strand at 996.908 kb on + strand at 996.909 kb on - strand at 996.909 kb on - strand at 996.909 kb on - strand at 996.928 kb on + strand at 996.928 kb on + strand at 996.937 kb on - strand at 996.948 kb on - strand at 996.967 kb on + strand at 996.977 kb on + strand at 996.978 kb on - strand at 997.001 kb on + strand at 997.001 kb on + strand at 997.002 kb on - strand at 997.002 kb on - strand at 997.052 kb on + strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.053 kb on - strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.054 kb on + strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.055 kb on - strand, within DZA65_RS04805 at 997.078 kb on - strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.097 kb on + strand, within DZA65_RS04805 at 997.098 kb on - strand, within DZA65_RS04805 at 997.098 kb on - strand, within DZA65_RS04805 at 997.104 kb on + strand, within DZA65_RS04805 at 997.104 kb on + strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.105 kb on - strand, within DZA65_RS04805 at 997.179 kb on - strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.186 kb on + strand, within DZA65_RS04805 at 997.187 kb on - strand, within DZA65_RS04805 at 997.187 kb on - strand, within DZA65_RS04805 at 997.193 kb on + strand, within DZA65_RS04805 at 997.194 kb on - strand, within DZA65_RS04805 at 997.194 kb on - strand, within DZA65_RS04805 at 997.194 kb on - strand at 997.194 kb on - strand, within DZA65_RS04805 at 997.194 kb on - strand, within DZA65_RS04805 at 997.200 kb on - strand, within DZA65_RS04805 at 997.200 kb on - strand, within DZA65_RS04805 at 997.246 kb on + strand, within DZA65_RS04805 at 997.247 kb on - strand, within DZA65_RS04805 at 997.247 kb on - strand, within DZA65_RS04805 at 997.250 kb on + strand, within DZA65_RS04805 at 997.250 kb on + strand, within DZA65_RS04805 at 997.251 kb on - strand, within DZA65_RS04805 at 997.251 kb on - strand, within DZA65_RS04805 at 997.292 kb on + strand, within DZA65_RS04805 at 997.293 kb on - strand, within DZA65_RS04805 at 997.293 kb on - strand, within DZA65_RS04805 at 997.293 kb on - strand, within DZA65_RS04805 at 997.323 kb on + strand, within DZA65_RS04805 at 997.324 kb on - strand, within DZA65_RS04805 at 997.324 kb on - strand, within DZA65_RS04805 at 997.344 kb on - strand, within DZA65_RS04805 at 997.346 kb on + strand, within DZA65_RS04805 at 997.347 kb on - strand, within DZA65_RS04805 at 997.347 kb on - strand, within DZA65_RS04805 at 997.364 kb on - strand, within DZA65_RS04805 at 997.469 kb on - strand, within DZA65_RS04805 at 997.486 kb on + strand, within DZA65_RS04805 at 997.487 kb on - strand, within DZA65_RS04805 at 997.494 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.514 kb on + strand, within DZA65_RS04805 at 997.515 kb on - strand, within DZA65_RS04805 at 997.649 kb on - strand, within DZA65_RS04805 at 997.649 kb on - strand, within DZA65_RS04805 at 997.649 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805 at 997.666 kb on - strand, within DZA65_RS04805
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 994,497 - +0.1 994,497 - -0.8 994,549 + +1.3 994,549 + +0.2 994,559 + -0.5 994,559 + -0.9 994,559 + +1.9 994,560 - +0.4 994,560 - -0.5 994,560 - +2.0 994,560 - +0.1 994,666 - -0.2 994,766 - +0.0 994,766 - -0.7 994,766 - +0.8 994,800 + -1.8 994,800 + -0.6 994,801 - -0.2 994,801 - -0.7 994,801 - -0.4 995,013 - +0.5 995,013 - -1.0 995,057 - -0.2 995,081 + +0.9 995,082 - -0.5 995,082 - -0.2 995,082 - +1.7 995,082 - +0.4 995,085 + -0.6 995,085 + +0.1 995,085 + -1.3 995,086 - +0.1 995,086 - -0.5 995,086 - -0.2 995,086 - +1.1 995,086 - -0.7 995,091 - -0.4 995,120 + +0.9 995,120 + -0.3 995,120 + +0.5 995,139 + +0.1 995,142 + -0.5 995,170 - +0.0 995,206 + DZA65_RS04795 0.22 -0.7 995,213 + DZA65_RS04795 0.26 -0.6 995,214 - DZA65_RS04795 0.26 +0.0 995,226 - DZA65_RS04795 0.33 -0.4 995,226 - DZA65_RS04795 0.33 -1.0 995,267 + DZA65_RS04795 0.54 -0.9 995,268 - DZA65_RS04795 0.55 -0.0 995,371 - +0.8 995,385 + +0.5 995,389 - +0.5 995,421 - -2.1 995,559 - +2.0 995,559 - -1.7 995,559 - +0.6 995,561 - -0.1 995,561 - -0.2 995,561 - +0.3 995,648 + DZA65_RS04800 0.13 -0.4 995,655 + DZA65_RS04800 0.14 +0.0 995,656 - DZA65_RS04800 0.14 +1.2 995,698 + DZA65_RS04800 0.17 +1.1 995,699 - DZA65_RS04800 0.17 -2.2 995,699 - DZA65_RS04800 0.17 -1.4 995,756 + DZA65_RS04800 0.22 -1.0 995,756 + DZA65_RS04800 0.22 +0.2 995,756 + DZA65_RS04800 0.22 -1.5 995,757 - DZA65_RS04800 0.22 -0.4 995,757 - DZA65_RS04800 0.22 -0.2 995,927 + DZA65_RS04800 0.36 +0.4 995,927 + DZA65_RS04800 0.36 -1.0 995,927 + DZA65_RS04800 0.36 -0.6 995,928 - DZA65_RS04800 0.36 +0.4 995,929 + DZA65_RS04800 0.36 -0.7 995,929 + DZA65_RS04800 0.36 -0.1 995,929 + DZA65_RS04800 0.36 +0.1 995,929 + DZA65_RS04800 0.36 -2.1 995,929 + DZA65_RS04800 0.36 -0.2 995,929 + DZA65_RS04800 0.36 -1.0 995,929 + DZA65_RS04800 0.36 +1.0 995,929 + DZA65_RS04800 0.36 -0.4 995,929 + DZA65_RS04800 0.36 +0.7 995,929 + DZA65_RS04800 0.36 +1.0 995,929 + DZA65_RS04800 0.36 +1.4 995,929 + DZA65_RS04800 0.36 +0.1 995,929 + DZA65_RS04800 0.36 +1.8 995,930 - DZA65_RS04800 0.36 -0.2 995,930 - DZA65_RS04800 0.36 -0.5 995,930 - DZA65_RS04800 0.36 +0.1 995,930 - DZA65_RS04800 0.36 -0.1 995,930 - DZA65_RS04800 0.36 -0.1 996,037 + DZA65_RS04800 0.45 -1.4 996,037 + DZA65_RS04800 0.45 -0.3 996,037 + DZA65_RS04800 0.45 +1.5 996,037 + DZA65_RS04800 0.45 +0.4 996,037 + DZA65_RS04800 0.45 -0.4 996,037 + DZA65_RS04800 0.45 -0.4 996,037 + DZA65_RS04800 0.45 -0.8 996,037 + DZA65_RS04800 0.45 -0.6 996,038 - DZA65_RS04800 0.45 -1.3 996,038 - DZA65_RS04800 0.45 -0.0 996,145 + DZA65_RS04800 0.54 +0.3 996,145 + DZA65_RS04800 0.54 +1.4 996,145 + DZA65_RS04800 0.54 +0.8 996,145 + DZA65_RS04800 0.54 +0.6 996,230 + DZA65_RS04800 0.61 +0.9 996,397 + DZA65_RS04800 0.75 -0.4 996,397 + DZA65_RS04800 0.75 +0.1 996,397 + DZA65_RS04800 0.75 -1.0 996,398 - DZA65_RS04800 0.75 -0.5 996,398 - DZA65_RS04800 0.75 -0.3 996,518 + DZA65_RS04800 0.85 +1.8 996,518 + DZA65_RS04800 0.85 +0.8 996,518 + DZA65_RS04800 0.85 +0.9 996,519 - DZA65_RS04800 0.85 -0.2 996,519 - DZA65_RS04800 0.85 +0.0 996,519 - DZA65_RS04800 0.85 +0.9 996,519 - DZA65_RS04800 0.85 +0.7 996,519 - DZA65_RS04800 0.85 -0.4 996,580 + +0.9 996,580 + -0.4 996,581 - +1.4 996,585 + -1.2 996,585 + -2.2 996,585 + -0.1 996,585 + -0.7 996,585 + -0.5 996,585 + +0.3 996,585 + -0.2 996,586 - -0.2 996,586 - +0.4 996,586 - -0.0 996,586 - +0.7 996,586 - -0.2 996,586 - +0.8 996,586 - +0.1 996,586 - -0.4 996,586 - -1.2 996,586 - -0.5 996,586 - -0.3 996,586 - -0.6 996,586 - +0.9 996,586 - +0.1 996,586 - -0.5 996,586 - -0.5 996,602 + -2.0 996,602 + +0.1 996,602 + +0.8 996,602 + +0.4 996,606 + -0.7 996,606 + -0.5 996,616 + +0.6 996,617 - +0.0 996,617 - +1.4 996,617 - +0.1 996,644 - -1.2 996,687 + +1.7 996,687 + -0.3 996,802 - +0.0 996,802 - +0.3 996,820 - -1.0 996,840 - +0.8 996,908 + -1.3 996,908 + -0.1 996,909 - -1.0 996,909 - -0.0 996,909 - +0.7 996,928 + -0.6 996,928 + -1.0 996,937 - +0.3 996,948 - +0.5 996,967 + -1.4 996,977 + -0.4 996,978 - +0.8 997,001 + -0.5 997,001 + -0.2 997,002 - -0.6 997,002 - +1.4 997,052 + DZA65_RS04805 0.10 -0.2 997,053 - DZA65_RS04805 0.10 -1.6 997,053 - DZA65_RS04805 0.10 +0.3 997,053 - DZA65_RS04805 0.10 +0.1 997,053 - DZA65_RS04805 0.10 +0.0 997,054 + DZA65_RS04805 0.11 -1.5 997,054 + DZA65_RS04805 0.11 +1.2 997,054 + DZA65_RS04805 0.11 +0.9 997,054 + DZA65_RS04805 0.11 -0.4 997,054 + DZA65_RS04805 0.11 -1.8 997,054 + DZA65_RS04805 0.11 +0.4 997,055 - DZA65_RS04805 0.11 -0.1 997,055 - DZA65_RS04805 0.11 -0.7 997,055 - DZA65_RS04805 0.11 +0.3 997,055 - DZA65_RS04805 0.11 -2.1 997,055 - DZA65_RS04805 0.11 -0.4 997,078 - DZA65_RS04805 0.13 -0.1 997,097 + DZA65_RS04805 0.15 -0.1 997,097 + DZA65_RS04805 0.15 +0.5 997,097 + DZA65_RS04805 0.15 +0.7 997,097 + DZA65_RS04805 0.15 -0.2 997,098 - DZA65_RS04805 0.16 -1.2 997,098 - DZA65_RS04805 0.16 +0.2 997,104 + DZA65_RS04805 0.16 -1.6 997,104 + DZA65_RS04805 0.16 +0.4 997,105 - DZA65_RS04805 0.16 +0.2 997,105 - DZA65_RS04805 0.16 -0.0 997,105 - DZA65_RS04805 0.16 +1.0 997,105 - DZA65_RS04805 0.16 +0.4 997,105 - DZA65_RS04805 0.16 +0.1 997,179 - DZA65_RS04805 0.25 -1.0 997,186 + DZA65_RS04805 0.25 +1.0 997,186 + DZA65_RS04805 0.25 -0.1 997,186 + DZA65_RS04805 0.25 +0.0 997,186 + DZA65_RS04805 0.25 -0.3 997,187 - DZA65_RS04805 0.26 +1.6 997,187 - DZA65_RS04805 0.26 -0.0 997,193 + DZA65_RS04805 0.26 +0.8 997,194 - DZA65_RS04805 0.26 +1.7 997,194 - DZA65_RS04805 0.26 +0.4 997,194 - +2.0 997,194 - DZA65_RS04805 0.26 -0.2 997,194 - DZA65_RS04805 0.26 -1.6 997,200 - DZA65_RS04805 0.27 +0.3 997,200 - DZA65_RS04805 0.27 +0.8 997,246 + DZA65_RS04805 0.32 -0.0 997,247 - DZA65_RS04805 0.32 -0.1 997,247 - DZA65_RS04805 0.32 -1.4 997,250 + DZA65_RS04805 0.33 +1.0 997,250 + DZA65_RS04805 0.33 -2.7 997,251 - DZA65_RS04805 0.33 +0.2 997,251 - DZA65_RS04805 0.33 +0.8 997,292 + DZA65_RS04805 0.37 -1.2 997,293 - DZA65_RS04805 0.38 +0.6 997,293 - DZA65_RS04805 0.38 +0.2 997,293 - DZA65_RS04805 0.38 -0.1 997,323 + DZA65_RS04805 0.41 +0.3 997,324 - DZA65_RS04805 0.41 +0.4 997,324 - DZA65_RS04805 0.41 -0.5 997,344 - DZA65_RS04805 0.43 -1.0 997,346 + DZA65_RS04805 0.43 +1.0 997,347 - DZA65_RS04805 0.44 +1.0 997,347 - DZA65_RS04805 0.44 +0.7 997,364 - DZA65_RS04805 0.45 +0.1 997,469 - DZA65_RS04805 0.57 -1.1 997,486 + DZA65_RS04805 0.59 -0.5 997,487 - DZA65_RS04805 0.59 +0.0 997,494 + DZA65_RS04805 0.60 +0.9 997,514 + DZA65_RS04805 0.62 +0.5 997,514 + DZA65_RS04805 0.62 -0.4 997,514 + DZA65_RS04805 0.62 -2.1 997,514 + DZA65_RS04805 0.62 -1.4 997,514 + DZA65_RS04805 0.62 +1.0 997,514 + DZA65_RS04805 0.62 +0.2 997,515 - DZA65_RS04805 0.62 -0.6 997,649 - DZA65_RS04805 0.78 +0.4 997,649 - DZA65_RS04805 0.78 -1.6 997,649 - DZA65_RS04805 0.78 -0.1 997,666 - DZA65_RS04805 0.80 +0.0 997,666 - DZA65_RS04805 0.80 -1.9 997,666 - DZA65_RS04805 0.80 -1.8 997,666 - DZA65_RS04805 0.80 -0.6
Or see this region's nucleotide sequence