Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04715 and DZA65_RS04720 are separated by 2 nucleotides DZA65_RS04720 and DZA65_RS04725 are separated by 58 nucleotides DZA65_RS04725 and DZA65_RS04730 are separated by 107 nucleotides DZA65_RS04730 and DZA65_RS04735 are separated by 148 nucleotides DZA65_RS04735 and DZA65_RS04740 overlap by 1 nucleotides
DZA65_RS04715: DZA65_RS04715 - type II toxin-antitoxin system toxin CcdB, at 981,395 to 981,700
_RS04715
DZA65_RS04720: DZA65_RS04720 - type II toxin-antitoxin system antitoxin CcdA, at 981,703 to 981,921
_RS04720
DZA65_RS04725: DZA65_RS04725 - DUF4102 domain-containing protein, at 981,980 to 982,426
_RS04725
DZA65_RS04730: DZA65_RS04730 - hypothetical protein, at 982,534 to 982,716
_RS04730
DZA65_RS04735: DZA65_RS04735 - M48 family metallopeptidase, at 982,865 to 983,581
_RS04735
DZA65_RS04740: DZA65_RS04740 - HsdR family type I site-specific deoxyribonuclease, at 983,581 to 986,676
_RS04740
Position (kb) 982
983 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.559 kb on + strand, within DZA65_RS04715 at 981.560 kb on - strand, within DZA65_RS04715 at 981.591 kb on - strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.607 kb on + strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.608 kb on - strand, within DZA65_RS04715 at 981.852 kb on + strand, within DZA65_RS04720 at 981.852 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.881 kb on + strand, within DZA65_RS04720 at 981.945 kb on - strand at 981.981 kb on + strand at 982.021 kb on + strand at 982.021 kb on + strand at 982.022 kb on - strand at 982.022 kb on - strand at 982.023 kb on + strand at 982.115 kb on - strand, within DZA65_RS04725 at 982.146 kb on + strand, within DZA65_RS04725 at 982.155 kb on + strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.156 kb on - strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.164 kb on + strand, within DZA65_RS04725 at 982.165 kb on - strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.168 kb on + strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.169 kb on - strand, within DZA65_RS04725 at 982.175 kb on - strand, within DZA65_RS04725 at 982.274 kb on + strand at 982.274 kb on + strand, within DZA65_RS04725 at 982.274 kb on + strand, within DZA65_RS04725 at 982.275 kb on - strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.314 kb on + strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.315 kb on - strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.319 kb on + strand, within DZA65_RS04725 at 982.320 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand at 982.351 kb on - strand, within DZA65_RS04725 at 982.351 kb on - strand, within DZA65_RS04725 at 982.378 kb on - strand, within DZA65_RS04725 at 982.474 kb on + strand at 982.503 kb on - strand at 982.503 kb on - strand at 982.531 kb on + strand at 982.532 kb on - strand at 982.532 kb on - strand at 982.535 kb on + strand at 982.535 kb on + strand at 982.536 kb on - strand at 982.579 kb on + strand, within DZA65_RS04730 at 982.579 kb on + strand, within DZA65_RS04730 at 982.623 kb on - strand, within DZA65_RS04730 at 982.697 kb on - strand, within DZA65_RS04730 at 982.814 kb on + strand at 982.814 kb on + strand at 982.819 kb on - strand at 982.823 kb on - strand at 982.829 kb on - strand at 982.869 kb on + strand at 982.869 kb on + strand at 982.870 kb on - strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.898 kb on + strand at 982.899 kb on - strand at 982.899 kb on - strand at 982.899 kb on - strand at 982.899 kb on - strand at 982.900 kb on + strand at 982.900 kb on + strand at 982.900 kb on + strand at 982.901 kb on - strand at 982.930 kb on + strand at 982.936 kb on + strand at 982.949 kb on - strand, within DZA65_RS04735 at 982.986 kb on - strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand, within DZA65_RS04735 at 983.011 kb on + strand at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.012 kb on - strand, within DZA65_RS04735 at 983.013 kb on + strand, within DZA65_RS04735 at 983.013 kb on + strand, within DZA65_RS04735 at 983.013 kb on + strand at 983.013 kb on + strand, within DZA65_RS04735 at 983.014 kb on - strand, within DZA65_RS04735 at 983.014 kb on - strand at 983.014 kb on - strand, within DZA65_RS04735 at 983.014 kb on - strand, within DZA65_RS04735 at 983.014 kb on - strand, within DZA65_RS04735 at 983.077 kb on + strand, within DZA65_RS04735 at 983.077 kb on + strand, within DZA65_RS04735 at 983.078 kb on - strand, within DZA65_RS04735 at 983.078 kb on - strand, within DZA65_RS04735 at 983.078 kb on - strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.080 kb on + strand, within DZA65_RS04735 at 983.081 kb on - strand, within DZA65_RS04735 at 983.163 kb on - strand, within DZA65_RS04735 at 983.163 kb on - strand, within DZA65_RS04735 at 983.167 kb on + strand, within DZA65_RS04735 at 983.211 kb on - strand, within DZA65_RS04735 at 983.211 kb on - strand, within DZA65_RS04735 at 983.222 kb on - strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.250 kb on + strand, within DZA65_RS04735 at 983.251 kb on - strand, within DZA65_RS04735 at 983.263 kb on + strand, within DZA65_RS04735 at 983.263 kb on + strand, within DZA65_RS04735 at 983.263 kb on + strand, within DZA65_RS04735 at 983.264 kb on - strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.266 kb on + strand, within DZA65_RS04735 at 983.267 kb on - strand, within DZA65_RS04735 at 983.323 kb on - strand, within DZA65_RS04735 at 983.323 kb on - strand, within DZA65_RS04735 at 983.323 kb on - strand, within DZA65_RS04735 at 983.326 kb on + strand, within DZA65_RS04735 at 983.327 kb on - strand, within DZA65_RS04735 at 983.327 kb on - strand, within DZA65_RS04735 at 983.340 kb on + strand, within DZA65_RS04735 at 983.341 kb on - strand, within DZA65_RS04735 at 983.341 kb on - strand, within DZA65_RS04735 at 983.448 kb on - strand, within DZA65_RS04735 at 983.515 kb on + strand at 983.528 kb on - strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.560 kb on + strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.561 kb on - strand at 983.564 kb on + strand at 983.564 kb on + strand at 983.564 kb on + strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.565 kb on - strand at 983.588 kb on + strand at 983.588 kb on + strand at 983.629 kb on - strand at 983.637 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.639 kb on + strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.640 kb on - strand at 983.685 kb on + strand at 983.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 981,559 + DZA65_RS04715 0.54 +0.7 981,559 + DZA65_RS04715 0.54 -0.7 981,559 + DZA65_RS04715 0.54 -0.6 981,559 + DZA65_RS04715 0.54 +0.4 981,560 - DZA65_RS04715 0.54 -0.6 981,591 - DZA65_RS04715 0.64 -0.7 981,607 + DZA65_RS04715 0.69 -1.6 981,607 + DZA65_RS04715 0.69 +1.4 981,608 - DZA65_RS04715 0.70 +1.1 981,608 - DZA65_RS04715 0.70 -0.1 981,852 + DZA65_RS04720 0.68 -1.9 981,852 + DZA65_RS04720 0.68 +0.7 981,881 + DZA65_RS04720 0.81 +0.5 981,881 + DZA65_RS04720 0.81 -1.6 981,945 - +1.8 981,981 + -1.4 982,021 + +0.0 982,021 + -0.0 982,022 - -0.1 982,022 - +0.1 982,023 + +0.4 982,115 - DZA65_RS04725 0.30 -1.8 982,146 + DZA65_RS04725 0.37 -0.3 982,155 + DZA65_RS04725 0.39 +0.4 982,156 - DZA65_RS04725 0.39 +0.6 982,156 - DZA65_RS04725 0.39 +1.6 982,164 + DZA65_RS04725 0.41 -0.0 982,164 + DZA65_RS04725 0.41 -1.4 982,164 + DZA65_RS04725 0.41 -1.8 982,164 + DZA65_RS04725 0.41 +0.2 982,165 - DZA65_RS04725 0.41 +0.2 982,168 + DZA65_RS04725 0.42 -0.2 982,168 + DZA65_RS04725 0.42 -0.3 982,168 + DZA65_RS04725 0.42 +1.7 982,168 + DZA65_RS04725 0.42 +0.4 982,168 + DZA65_RS04725 0.42 -0.6 982,168 + DZA65_RS04725 0.42 -0.6 982,168 + DZA65_RS04725 0.42 -0.6 982,168 + DZA65_RS04725 0.42 -1.9 982,168 + DZA65_RS04725 0.42 -0.0 982,169 - DZA65_RS04725 0.42 -0.6 982,169 - DZA65_RS04725 0.42 -0.1 982,169 - DZA65_RS04725 0.42 -0.9 982,169 - DZA65_RS04725 0.42 -0.3 982,169 - DZA65_RS04725 0.42 +1.1 982,169 - DZA65_RS04725 0.42 +0.5 982,169 - DZA65_RS04725 0.42 +0.6 982,175 - DZA65_RS04725 0.44 -1.2 982,274 + -0.2 982,274 + DZA65_RS04725 0.66 +0.2 982,274 + DZA65_RS04725 0.66 -0.2 982,275 - DZA65_RS04725 0.66 +0.1 982,314 + DZA65_RS04725 0.75 -1.4 982,314 + DZA65_RS04725 0.75 -0.8 982,314 + DZA65_RS04725 0.75 -0.9 982,314 + DZA65_RS04725 0.75 -0.4 982,314 + DZA65_RS04725 0.75 -0.4 982,315 - DZA65_RS04725 0.75 -0.6 982,315 - DZA65_RS04725 0.75 +0.7 982,315 - DZA65_RS04725 0.75 -0.7 982,315 - DZA65_RS04725 0.75 +0.6 982,319 + DZA65_RS04725 0.76 -0.4 982,319 + DZA65_RS04725 0.76 -0.2 982,319 + DZA65_RS04725 0.76 +0.6 982,319 + DZA65_RS04725 0.76 -0.3 982,319 + DZA65_RS04725 0.76 -0.2 982,319 + DZA65_RS04725 0.76 +0.2 982,320 - DZA65_RS04725 0.76 +0.1 982,351 - DZA65_RS04725 0.83 +0.1 982,351 - DZA65_RS04725 0.83 -0.2 982,351 - -1.4 982,351 - DZA65_RS04725 0.83 -2.6 982,351 - DZA65_RS04725 0.83 +0.0 982,378 - DZA65_RS04725 0.89 -1.4 982,474 + -0.4 982,503 - +0.5 982,503 - +0.4 982,531 + -0.7 982,532 - +0.4 982,532 - +0.7 982,535 + +0.0 982,535 + +0.3 982,536 - -0.7 982,579 + DZA65_RS04730 0.25 -0.4 982,579 + DZA65_RS04730 0.25 -1.2 982,623 - DZA65_RS04730 0.49 -1.0 982,697 - DZA65_RS04730 0.89 -2.3 982,814 + -0.9 982,814 + -0.2 982,819 - +0.2 982,823 - +3.0 982,829 - -1.4 982,869 + -0.2 982,869 + -0.9 982,870 - -0.8 982,898 + -1.8 982,898 + +1.4 982,898 + +0.1 982,898 + -0.7 982,898 + +0.4 982,898 + -0.2 982,899 - -0.4 982,899 - +0.9 982,899 - +0.4 982,899 - -0.8 982,900 + -1.2 982,900 + -0.2 982,900 + +0.0 982,901 - -0.5 982,930 + +0.2 982,936 + -0.2 982,949 - DZA65_RS04735 0.12 -2.0 982,986 - DZA65_RS04735 0.17 -0.0 983,011 + DZA65_RS04735 0.20 +1.5 983,011 + DZA65_RS04735 0.20 -1.0 983,011 + DZA65_RS04735 0.20 -0.7 983,011 + DZA65_RS04735 0.20 -0.4 983,011 + +1.4 983,012 - DZA65_RS04735 0.21 -0.7 983,012 - DZA65_RS04735 0.21 -0.2 983,012 - DZA65_RS04735 0.21 +0.4 983,012 - DZA65_RS04735 0.21 +1.0 983,012 - DZA65_RS04735 0.21 -0.2 983,013 + DZA65_RS04735 0.21 -0.0 983,013 + DZA65_RS04735 0.21 +0.5 983,013 + -0.6 983,013 + DZA65_RS04735 0.21 -0.4 983,014 - DZA65_RS04735 0.21 +1.8 983,014 - +1.4 983,014 - DZA65_RS04735 0.21 -0.0 983,014 - DZA65_RS04735 0.21 -1.2 983,014 - DZA65_RS04735 0.21 +1.2 983,077 + DZA65_RS04735 0.30 -0.1 983,077 + DZA65_RS04735 0.30 -0.6 983,078 - DZA65_RS04735 0.30 +0.2 983,078 - DZA65_RS04735 0.30 -0.5 983,078 - DZA65_RS04735 0.30 +0.2 983,080 + DZA65_RS04735 0.30 -1.1 983,080 + DZA65_RS04735 0.30 +0.6 983,080 + DZA65_RS04735 0.30 +1.4 983,080 + DZA65_RS04735 0.30 +0.7 983,080 + DZA65_RS04735 0.30 +0.5 983,080 + DZA65_RS04735 0.30 +0.2 983,080 + DZA65_RS04735 0.30 -1.0 983,080 + DZA65_RS04735 0.30 -0.8 983,081 - DZA65_RS04735 0.30 -1.6 983,163 - DZA65_RS04735 0.42 +0.6 983,163 - DZA65_RS04735 0.42 -1.3 983,167 + DZA65_RS04735 0.42 -0.6 983,211 - DZA65_RS04735 0.48 -0.6 983,211 - DZA65_RS04735 0.48 +0.2 983,222 - DZA65_RS04735 0.50 -2.1 983,250 + DZA65_RS04735 0.54 +1.0 983,250 + DZA65_RS04735 0.54 -0.5 983,250 + DZA65_RS04735 0.54 -1.2 983,250 + DZA65_RS04735 0.54 +0.4 983,251 - DZA65_RS04735 0.54 -0.7 983,263 + DZA65_RS04735 0.56 -1.2 983,263 + DZA65_RS04735 0.56 +0.6 983,263 + DZA65_RS04735 0.56 -0.8 983,264 - DZA65_RS04735 0.56 -0.6 983,266 + DZA65_RS04735 0.56 -1.8 983,266 + DZA65_RS04735 0.56 -0.3 983,266 + DZA65_RS04735 0.56 -0.6 983,266 + DZA65_RS04735 0.56 +0.0 983,267 - DZA65_RS04735 0.56 +0.1 983,323 - DZA65_RS04735 0.64 +1.5 983,323 - DZA65_RS04735 0.64 +0.2 983,323 - DZA65_RS04735 0.64 +1.4 983,326 + DZA65_RS04735 0.64 -0.7 983,327 - DZA65_RS04735 0.64 +1.7 983,327 - DZA65_RS04735 0.64 -0.0 983,340 + DZA65_RS04735 0.66 +1.0 983,341 - DZA65_RS04735 0.66 -0.1 983,341 - DZA65_RS04735 0.66 -2.4 983,448 - DZA65_RS04735 0.81 -0.4 983,515 + +0.5 983,528 - +0.2 983,560 + +0.3 983,560 + -0.0 983,560 + +0.2 983,560 + -1.3 983,560 + -0.2 983,561 - +0.7 983,561 - -0.2 983,561 - +0.0 983,561 - +0.8 983,564 + -0.1 983,564 + +0.8 983,564 + -2.2 983,565 - +0.4 983,565 - +0.4 983,565 - +0.0 983,565 - -0.7 983,565 - +0.1 983,588 + +0.1 983,588 + +0.8 983,629 - +1.0 983,637 + -0.1 983,639 + +0.6 983,639 + -1.8 983,639 + +0.6 983,639 + +0.1 983,639 + +1.1 983,639 + -0.5 983,639 + +0.4 983,639 + -0.0 983,639 + -1.2 983,639 + -0.4 983,639 + -0.2 983,640 - -1.1 983,640 - -0.2 983,640 - -1.0 983,640 - +1.4 983,640 - -0.5 983,640 - -2.1 983,640 - +0.8 983,640 - -0.5 983,640 - -0.2 983,640 - +1.2 983,685 + +0.0 983,685 + -0.6
Or see this region's nucleotide sequence