Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04390

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04385 and DZA65_RS04390 are separated by 46 nucleotidesDZA65_RS04390 and DZA65_RS04395 are separated by 448 nucleotides DZA65_RS04385: DZA65_RS04385 - L-methionine/branched-chain amino acid transporter, at 914,454 to 915,707 _RS04385 DZA65_RS04390: DZA65_RS04390 - accessory factor UbiK family protein, at 915,754 to 916,038 _RS04390 DZA65_RS04395: DZA65_RS04395 - 3,4-dihydroxy-2-butanone-4-phosphate synthase, at 916,487 to 917,140 _RS04395 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1at 914.903 kb on - strand, within DZA65_RS04385at 914.903 kb on - strand, within DZA65_RS04385at 914.903 kb on - strand, within DZA65_RS04385at 914.966 kb on + strand, within DZA65_RS04385at 915.130 kb on + strand, within DZA65_RS04385at 915.130 kb on + strand, within DZA65_RS04385at 915.130 kb on + strand, within DZA65_RS04385at 915.130 kb on + strand, within DZA65_RS04385at 915.130 kb on + strand, within DZA65_RS04385at 915.131 kb on - strand, within DZA65_RS04385at 915.131 kb on - strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.167 kb on + strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.168 kb on - strand, within DZA65_RS04385at 915.314 kb on + strand, within DZA65_RS04385at 915.314 kb on + strandat 915.314 kb on + strand, within DZA65_RS04385at 915.314 kb on + strand, within DZA65_RS04385at 915.314 kb on + strand, within DZA65_RS04385at 915.314 kb on + strand, within DZA65_RS04385at 915.315 kb on - strand, within DZA65_RS04385at 915.315 kb on - strand, within DZA65_RS04385at 915.315 kb on - strand, within DZA65_RS04385at 915.315 kb on - strand, within DZA65_RS04385at 915.315 kb on - strand, within DZA65_RS04385at 915.315 kb on - strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.318 kb on + strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.319 kb on - strand, within DZA65_RS04385at 915.321 kb on - strand, within DZA65_RS04385at 915.395 kb on + strand, within DZA65_RS04385at 915.452 kb on + strand, within DZA65_RS04385at 915.452 kb on + strand, within DZA65_RS04385at 915.452 kb on + strand, within DZA65_RS04385at 915.452 kb on + strand, within DZA65_RS04385at 915.453 kb on - strand, within DZA65_RS04385at 915.453 kb on - strand, within DZA65_RS04385at 915.457 kb on - strandat 915.519 kb on + strand, within DZA65_RS04385at 915.519 kb on + strand, within DZA65_RS04385at 915.519 kb on + strand, within DZA65_RS04385at 915.520 kb on - strand, within DZA65_RS04385at 915.520 kb on - strand, within DZA65_RS04385at 915.523 kb on + strand, within DZA65_RS04385at 915.523 kb on + strand, within DZA65_RS04385at 915.523 kb on + strand, within DZA65_RS04385at 915.523 kb on + strand, within DZA65_RS04385at 915.524 kb on - strand, within DZA65_RS04385at 915.524 kb on - strand, within DZA65_RS04385at 915.524 kb on - strand, within DZA65_RS04385at 915.524 kb on - strand, within DZA65_RS04385at 915.524 kb on - strand, within DZA65_RS04385at 915.524 kb on - strand, within DZA65_RS04385at 915.701 kb on + strandat 915.755 kb on + strandat 915.755 kb on + strandat 915.756 kb on - strandat 915.822 kb on + strand, within DZA65_RS04390at 915.822 kb on + strand, within DZA65_RS04390at 915.822 kb on + strand, within DZA65_RS04390at 915.822 kb on + strand, within DZA65_RS04390at 915.822 kb on + strand, within DZA65_RS04390at 915.823 kb on - strand, within DZA65_RS04390at 915.823 kb on - strand, within DZA65_RS04390at 915.823 kb on - strand, within DZA65_RS04390at 915.823 kb on - strand, within DZA65_RS04390at 915.823 kb on - strand, within DZA65_RS04390at 915.953 kb on - strand, within DZA65_RS04390at 916.073 kb on + strandat 916.073 kb on + strandat 916.074 kb on - strandat 916.074 kb on - strandat 916.074 kb on - strandat 916.074 kb on - strandat 916.075 kb on + strandat 916.075 kb on + strandat 916.075 kb on + strandat 916.076 kb on - strandat 916.076 kb on - strandat 916.076 kb on - strandat 916.076 kb on - strandat 916.086 kb on + strandat 916.086 kb on + strandat 916.086 kb on + strandat 916.105 kb on + strandat 916.148 kb on + strandat 916.148 kb on + strandat 916.149 kb on - strandat 916.149 kb on - strandat 916.149 kb on - strandat 916.149 kb on - strandat 916.149 kb on - strandat 916.149 kb on - strandat 916.159 kb on + strandat 916.188 kb on + strandat 916.188 kb on + strandat 916.190 kb on + strandat 916.190 kb on + strandat 916.193 kb on + strandat 916.193 kb on + strandat 916.193 kb on + strandat 916.193 kb on + strandat 916.193 kb on + strandat 916.203 kb on + strandat 916.315 kb on + strandat 916.336 kb on + strandat 916.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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914,903 - DZA65_RS04385 0.36 +0.1
914,903 - DZA65_RS04385 0.36 -0.7
914,903 - DZA65_RS04385 0.36 -2.1
914,966 + DZA65_RS04385 0.41 -0.2
915,130 + DZA65_RS04385 0.54 +0.1
915,130 + DZA65_RS04385 0.54 -0.1
915,130 + DZA65_RS04385 0.54 +1.4
915,130 + DZA65_RS04385 0.54 +0.6
915,130 + DZA65_RS04385 0.54 +0.3
915,131 - DZA65_RS04385 0.54 +0.6
915,131 - DZA65_RS04385 0.54 +0.1
915,167 + DZA65_RS04385 0.57 +0.4
915,167 + DZA65_RS04385 0.57 +0.7
915,167 + DZA65_RS04385 0.57 -0.4
915,167 + DZA65_RS04385 0.57 -0.5
915,167 + DZA65_RS04385 0.57 -0.6
915,167 + DZA65_RS04385 0.57 +0.5
915,167 + DZA65_RS04385 0.57 +1.0
915,168 - DZA65_RS04385 0.57 -0.4
915,168 - DZA65_RS04385 0.57 -0.1
915,168 - DZA65_RS04385 0.57 -1.3
915,168 - DZA65_RS04385 0.57 +0.9
915,168 - DZA65_RS04385 0.57 +0.6
915,168 - DZA65_RS04385 0.57 -0.2
915,168 - DZA65_RS04385 0.57 +0.2
915,168 - DZA65_RS04385 0.57 +0.2
915,168 - DZA65_RS04385 0.57 +0.2
915,168 - DZA65_RS04385 0.57 -1.4
915,314 + DZA65_RS04385 0.69 +1.4
915,314 + +1.4
915,314 + DZA65_RS04385 0.69 +1.7
915,314 + DZA65_RS04385 0.69 -1.4
915,314 + DZA65_RS04385 0.69 -0.3
915,314 + DZA65_RS04385 0.69 -1.6
915,315 - DZA65_RS04385 0.69 +0.6
915,315 - DZA65_RS04385 0.69 -0.0
915,315 - DZA65_RS04385 0.69 +0.5
915,315 - DZA65_RS04385 0.69 -0.3
915,315 - DZA65_RS04385 0.69 +1.2
915,315 - DZA65_RS04385 0.69 -0.1
915,318 + DZA65_RS04385 0.69 -0.2
915,318 + DZA65_RS04385 0.69 -0.4
915,318 + DZA65_RS04385 0.69 -2.2
915,318 + DZA65_RS04385 0.69 +1.4
915,318 + DZA65_RS04385 0.69 +1.5
915,318 + DZA65_RS04385 0.69 -1.3
915,318 + DZA65_RS04385 0.69 -0.1
915,318 + DZA65_RS04385 0.69 -0.0
915,318 + DZA65_RS04385 0.69 -2.1
915,318 + DZA65_RS04385 0.69 -0.8
915,318 + DZA65_RS04385 0.69 -0.4
915,318 + DZA65_RS04385 0.69 +0.4
915,318 + DZA65_RS04385 0.69 -0.2
915,319 - DZA65_RS04385 0.69 -0.2
915,319 - DZA65_RS04385 0.69 +0.6
915,319 - DZA65_RS04385 0.69 +0.2
915,319 - DZA65_RS04385 0.69 +0.6
915,319 - DZA65_RS04385 0.69 +0.7
915,319 - DZA65_RS04385 0.69 +0.1
915,319 - DZA65_RS04385 0.69 -0.8
915,319 - DZA65_RS04385 0.69 +0.3
915,319 - DZA65_RS04385 0.69 -0.8
915,319 - DZA65_RS04385 0.69 -0.9
915,319 - DZA65_RS04385 0.69 +0.7
915,319 - DZA65_RS04385 0.69 -0.5
915,319 - DZA65_RS04385 0.69 +0.6
915,319 - DZA65_RS04385 0.69 -0.4
915,321 - DZA65_RS04385 0.69 -1.8
915,395 + DZA65_RS04385 0.75 -0.5
915,452 + DZA65_RS04385 0.80 -0.6
915,452 + DZA65_RS04385 0.80 -0.8
915,452 + DZA65_RS04385 0.80 -0.0
915,452 + DZA65_RS04385 0.80 -0.7
915,453 - DZA65_RS04385 0.80 +0.6
915,453 - DZA65_RS04385 0.80 -0.2
915,457 - -0.9
915,519 + DZA65_RS04385 0.85 -1.1
915,519 + DZA65_RS04385 0.85 -0.9
915,519 + DZA65_RS04385 0.85 -0.2
915,520 - DZA65_RS04385 0.85 +0.0
915,520 - DZA65_RS04385 0.85 +0.3
915,523 + DZA65_RS04385 0.85 +0.4
915,523 + DZA65_RS04385 0.85 -0.0
915,523 + DZA65_RS04385 0.85 -0.2
915,523 + DZA65_RS04385 0.85 -1.6
915,524 - DZA65_RS04385 0.85 -0.9
915,524 - DZA65_RS04385 0.85 +0.1
915,524 - DZA65_RS04385 0.85 +0.6
915,524 - DZA65_RS04385 0.85 +0.0
915,524 - DZA65_RS04385 0.85 -0.2
915,524 - DZA65_RS04385 0.85 -0.4
915,701 + -1.0
915,755 + +1.2
915,755 + +0.3
915,756 - -0.5
915,822 + DZA65_RS04390 0.24 -1.1
915,822 + DZA65_RS04390 0.24 +1.0
915,822 + DZA65_RS04390 0.24 -1.9
915,822 + DZA65_RS04390 0.24 -0.9
915,822 + DZA65_RS04390 0.24 +0.6
915,823 - DZA65_RS04390 0.24 -0.5
915,823 - DZA65_RS04390 0.24 -1.8
915,823 - DZA65_RS04390 0.24 +0.1
915,823 - DZA65_RS04390 0.24 -0.9
915,823 - DZA65_RS04390 0.24 -1.1
915,953 - DZA65_RS04390 0.70 -1.3
916,073 + -1.1
916,073 + +0.6
916,074 - -0.9
916,074 - -0.4
916,074 - -0.2
916,074 - +0.4
916,075 + -0.2
916,075 + -0.2
916,075 + -0.6
916,076 - +0.2
916,076 - -0.7
916,076 - -0.0
916,076 - +1.4
916,086 + +1.2
916,086 + +0.2
916,086 + -0.7
916,105 + +1.4
916,148 + -0.6
916,148 + -0.8
916,149 - -0.1
916,149 - -0.2
916,149 - +0.2
916,149 - -0.0
916,149 - +0.1
916,149 - -1.9
916,159 + +1.1
916,188 + +0.3
916,188 + -0.9
916,190 + -0.2
916,190 + -1.4
916,193 + -0.0
916,193 + -1.1
916,193 + -0.8
916,193 + -0.6
916,193 + +0.4
916,203 + -0.2
916,315 + -1.8
916,336 + +0.8
916,466 + -0.4

Or see this region's nucleotide sequence