Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04345 and DZA65_RS04350 are separated by 307 nucleotides DZA65_RS04350 and DZA65_RS04355 are separated by 41 nucleotides DZA65_RS04355 and DZA65_RS04360 are separated by 47 nucleotides DZA65_RS04360 and DZA65_RS04370 are separated by 424 nucleotides
DZA65_RS04345: DZA65_RS04345 - helix-turn-helix transcriptional regulator, at 907,390 to 907,953
_RS04345
DZA65_RS04350: DZA65_RS04350 - PTS glucose transporter subunit IIA, at 908,261 to 908,770
_RS04350
DZA65_RS04355: DZA65_RS04355 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 908,812 to 910,539
_RS04355
DZA65_RS04360: DZA65_RS04360 - phosphocarrier protein Hpr, at 910,587 to 910,844
_RS04360
DZA65_RS04370: DZA65_RS04370 - cysteine synthase A, at 911,269 to 912,237
_RS04370
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -2
-1
0
1
2 at 907.812 kb on + strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.863 kb on - strand, within DZA65_RS04345 at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.971 kb on + strand at 907.971 kb on + strand at 907.972 kb on - strand at 907.972 kb on - strand at 907.974 kb on + strand at 907.974 kb on + strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.983 kb on - strand at 907.983 kb on - strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.121 kb on + strand at 908.121 kb on + strand at 908.122 kb on - strand at 908.181 kb on + strand at 908.181 kb on + strand at 908.182 kb on - strand at 908.198 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.564 kb on - strand, within DZA65_RS04350 at 908.614 kb on + strand, within DZA65_RS04350 at 908.648 kb on + strand, within DZA65_RS04350 at 908.782 kb on - strand at 908.792 kb on - strand at 908.845 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.881 kb on + strand at 908.915 kb on + strand at 908.915 kb on + strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.002 kb on - strand, within DZA65_RS04355 at 909.002 kb on - strand, within DZA65_RS04355 at 909.006 kb on + strand, within DZA65_RS04355 at 909.006 kb on + strand, within DZA65_RS04355 at 909.006 kb on + strand, within DZA65_RS04355 at 909.007 kb on - strand, within DZA65_RS04355 at 909.007 kb on - strand, within DZA65_RS04355 at 909.007 kb on - strand, within DZA65_RS04355 at 909.117 kb on + strand, within DZA65_RS04355 at 909.118 kb on - strand, within DZA65_RS04355 at 909.119 kb on + strand at 909.119 kb on + strand, within DZA65_RS04355 at 909.119 kb on + strand, within DZA65_RS04355 at 909.119 kb on + strand, within DZA65_RS04355 at 909.119 kb on + strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.151 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.163 kb on - strand, within DZA65_RS04355 at 909.163 kb on - strand, within DZA65_RS04355 at 909.164 kb on + strand, within DZA65_RS04355 at 909.165 kb on - strand, within DZA65_RS04355 at 909.172 kb on + strand, within DZA65_RS04355 at 909.173 kb on - strand, within DZA65_RS04355 at 909.173 kb on - strand, within DZA65_RS04355 at 909.339 kb on + strand, within DZA65_RS04355 at 909.340 kb on - strand, within DZA65_RS04355 at 909.353 kb on - strand, within DZA65_RS04355 at 909.456 kb on + strand, within DZA65_RS04355 at 909.457 kb on - strand, within DZA65_RS04355 at 909.509 kb on + strand, within DZA65_RS04355 at 909.509 kb on + strand, within DZA65_RS04355 at 909.509 kb on + strand, within DZA65_RS04355 at 909.510 kb on - strand, within DZA65_RS04355 at 909.510 kb on - strand, within DZA65_RS04355 at 909.510 kb on - strand, within DZA65_RS04355 at 909.591 kb on - strand, within DZA65_RS04355 at 909.656 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.857 kb on + strand, within DZA65_RS04355 at 909.858 kb on - strand, within DZA65_RS04355 at 909.872 kb on - strand, within DZA65_RS04355 at 909.972 kb on + strand, within DZA65_RS04355 at 909.973 kb on - strand, within DZA65_RS04355 at 910.152 kb on + strand, within DZA65_RS04355 at 910.153 kb on - strand, within DZA65_RS04355 at 910.153 kb on - strand, within DZA65_RS04355 at 910.175 kb on + strand, within DZA65_RS04355 at 910.176 kb on - strand, within DZA65_RS04355 at 910.311 kb on + strand, within DZA65_RS04355 at 910.311 kb on + strand, within DZA65_RS04355 at 910.312 kb on - strand, within DZA65_RS04355 at 910.371 kb on + strand at 910.486 kb on + strand at 910.519 kb on + strand at 910.522 kb on + strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.525 kb on + strand at 910.525 kb on + strand at 910.526 kb on - strand at 910.550 kb on + strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.827 kb on + strand at 910.828 kb on - strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.904 kb on + strand at 910.904 kb on + strand at 910.905 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 911.068 kb on + strand at 911.068 kb on + strand at 911.069 kb on - strand at 911.074 kb on + strand at 911.074 kb on + strand at 911.075 kb on - strand at 911.095 kb on - strand at 911.135 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.216 kb on + strand at 911.251 kb on + strand at 911.263 kb on + strand at 911.264 kb on - strand at 911.270 kb on + strand at 911.270 kb on + strand at 911.271 kb on - strand at 911.271 kb on - strand at 911.316 kb on + strand at 911.350 kb on + strand at 911.350 kb on + strand at 911.351 kb on - strand at 911.538 kb on + strand, within DZA65_RS04370 at 911.539 kb on - strand, within DZA65_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 907,812 + DZA65_RS04345 0.75 -0.2 907,813 - DZA65_RS04345 0.75 +2.3 907,813 - DZA65_RS04345 0.75 -0.9 907,813 - DZA65_RS04345 0.75 -0.2 907,863 - DZA65_RS04345 0.84 +0.2 907,944 + -0.4 907,944 + +0.5 907,944 + +0.2 907,944 + +0.5 907,944 + -1.2 907,944 + -0.8 907,944 + +0.2 907,944 + -0.6 907,944 + -0.1 907,945 - -0.6 907,945 - -0.5 907,945 - +0.5 907,945 - +0.4 907,945 - +0.5 907,945 - +0.2 907,945 - -1.3 907,971 + +0.5 907,971 + -2.4 907,972 - +2.0 907,972 - +0.6 907,974 + -0.0 907,974 + -1.4 907,975 - -1.4 907,975 - +0.1 907,975 - -0.1 907,975 - +0.0 907,975 - +1.1 907,983 - +0.1 907,983 - +0.1 908,028 + +0.0 908,028 + +0.1 908,028 + +0.6 908,028 + -2.5 908,029 - -0.6 908,029 - +0.1 908,029 - -0.0 908,032 + -0.8 908,032 + -0.8 908,032 + -0.2 908,032 + +0.2 908,032 + -0.0 908,032 + +0.4 908,032 + -0.2 908,032 + +0.9 908,032 + -0.6 908,032 + -0.0 908,032 + -0.2 908,032 + -0.1 908,032 + -0.0 908,032 + +0.3 908,032 + -1.2 908,032 + +0.3 908,032 + -1.1 908,032 + -0.9 908,032 + +0.3 908,032 + +0.6 908,032 + -0.9 908,032 + +0.6 908,032 + -0.1 908,032 + -0.4 908,033 - -1.8 908,033 - -0.9 908,033 - +0.4 908,033 - -0.2 908,033 - +0.2 908,033 - -0.5 908,033 - -1.3 908,033 - -0.3 908,033 - +0.1 908,033 - -0.6 908,033 - -0.3 908,033 - +0.1 908,033 - -0.4 908,036 + -2.1 908,036 + +0.1 908,036 + -1.8 908,036 + -0.3 908,036 + -0.3 908,036 + -1.0 908,036 + -0.3 908,036 + -2.0 908,036 + +0.3 908,036 + +0.1 908,036 + -0.3 908,036 + +0.2 908,036 + -0.8 908,037 - -1.9 908,037 - -0.9 908,037 - +0.5 908,037 - +0.2 908,037 - +0.3 908,037 - -0.8 908,040 + +0.4 908,040 + -0.6 908,040 + +0.2 908,040 + +0.4 908,040 + +0.4 908,040 + +1.4 908,040 + -0.5 908,040 + -0.4 908,040 + -0.1 908,040 + +0.7 908,040 + -0.6 908,040 + -1.2 908,041 - -1.4 908,041 - +0.1 908,041 - +0.1 908,041 - -0.9 908,041 - -1.9 908,041 - -0.0 908,041 - -0.6 908,041 - +2.0 908,044 + -0.2 908,044 + -0.5 908,044 + -1.2 908,044 + -0.0 908,045 - +0.4 908,045 - +0.7 908,045 - -1.0 908,045 - -0.6 908,121 + +1.0 908,121 + +0.5 908,122 - -0.5 908,181 + -0.1 908,181 + +1.6 908,182 - +0.4 908,198 + -0.9 908,208 + +0.1 908,208 + -0.7 908,208 + -0.6 908,262 + +0.8 908,262 + -0.9 908,262 + -1.9 908,564 - DZA65_RS04350 0.59 -2.7 908,614 + DZA65_RS04350 0.69 +0.2 908,648 + DZA65_RS04350 0.76 +0.4 908,782 - -0.5 908,792 - -1.2 908,845 + -2.2 908,857 + -0.3 908,857 + -1.0 908,857 + -1.5 908,857 + -1.6 908,857 + -1.7 908,857 + -0.7 908,858 - -0.6 908,858 - -1.8 908,858 - +1.4 908,858 - -0.1 908,858 - -1.0 908,881 + +0.1 908,915 + +0.8 908,915 + -0.4 908,916 - -2.4 908,916 - -2.3 908,916 - -1.3 908,916 - -1.2 909,001 + DZA65_RS04355 0.11 -2.3 909,001 + DZA65_RS04355 0.11 -1.2 909,001 + DZA65_RS04355 0.11 +0.1 909,001 + DZA65_RS04355 0.11 -1.9 909,001 + DZA65_RS04355 0.11 -1.2 909,002 - DZA65_RS04355 0.11 -1.5 909,002 - DZA65_RS04355 0.11 -1.4 909,006 + DZA65_RS04355 0.11 -0.5 909,006 + DZA65_RS04355 0.11 -1.4 909,006 + DZA65_RS04355 0.11 -0.6 909,007 - DZA65_RS04355 0.11 -0.8 909,007 - DZA65_RS04355 0.11 -1.8 909,007 - DZA65_RS04355 0.11 -0.7 909,117 + DZA65_RS04355 0.18 -0.9 909,118 - DZA65_RS04355 0.18 -0.6 909,119 + -1.4 909,119 + DZA65_RS04355 0.18 -0.9 909,119 + DZA65_RS04355 0.18 -0.2 909,119 + DZA65_RS04355 0.18 +0.5 909,119 + DZA65_RS04355 0.18 -0.6 909,120 - DZA65_RS04355 0.18 +0.4 909,120 - DZA65_RS04355 0.18 -0.2 909,120 - DZA65_RS04355 0.18 -1.2 909,120 - DZA65_RS04355 0.18 -0.8 909,120 - DZA65_RS04355 0.18 -0.5 909,120 - DZA65_RS04355 0.18 -1.2 909,151 + DZA65_RS04355 0.20 -0.6 909,162 + DZA65_RS04355 0.20 -1.1 909,162 + DZA65_RS04355 0.20 -0.1 909,162 + DZA65_RS04355 0.20 +0.3 909,162 + DZA65_RS04355 0.20 +0.4 909,163 - DZA65_RS04355 0.20 +0.4 909,163 - DZA65_RS04355 0.20 -2.1 909,164 + DZA65_RS04355 0.20 -0.3 909,165 - DZA65_RS04355 0.20 +0.4 909,172 + DZA65_RS04355 0.21 -2.3 909,173 - DZA65_RS04355 0.21 -0.6 909,173 - DZA65_RS04355 0.21 +0.1 909,339 + DZA65_RS04355 0.30 -0.9 909,340 - DZA65_RS04355 0.31 -0.8 909,353 - DZA65_RS04355 0.31 -2.1 909,456 + DZA65_RS04355 0.37 -2.1 909,457 - DZA65_RS04355 0.37 +0.6 909,509 + DZA65_RS04355 0.40 -1.0 909,509 + DZA65_RS04355 0.40 -0.0 909,509 + DZA65_RS04355 0.40 -1.6 909,510 - DZA65_RS04355 0.40 -0.7 909,510 - DZA65_RS04355 0.40 -1.0 909,510 - DZA65_RS04355 0.40 -0.3 909,591 - DZA65_RS04355 0.45 -0.6 909,656 + DZA65_RS04355 0.49 -0.9 909,803 + DZA65_RS04355 0.57 -2.2 909,803 + DZA65_RS04355 0.57 -0.3 909,803 + DZA65_RS04355 0.57 +0.6 909,803 + DZA65_RS04355 0.57 -0.9 909,803 + DZA65_RS04355 0.57 -1.9 909,803 + DZA65_RS04355 0.57 -0.5 909,857 + DZA65_RS04355 0.60 -1.9 909,858 - DZA65_RS04355 0.61 -0.8 909,872 - DZA65_RS04355 0.61 -1.3 909,972 + DZA65_RS04355 0.67 -1.9 909,973 - DZA65_RS04355 0.67 +0.7 910,152 + DZA65_RS04355 0.78 -1.1 910,153 - DZA65_RS04355 0.78 -1.7 910,153 - DZA65_RS04355 0.78 -1.2 910,175 + DZA65_RS04355 0.79 -0.6 910,176 - DZA65_RS04355 0.79 -0.9 910,311 + DZA65_RS04355 0.87 +0.4 910,311 + DZA65_RS04355 0.87 -1.6 910,312 - DZA65_RS04355 0.87 -0.8 910,371 + -0.4 910,486 + +0.2 910,519 + -0.7 910,522 + +0.2 910,523 - +0.6 910,523 - -0.7 910,523 - -0.9 910,525 + -0.2 910,525 + -2.1 910,526 - +1.1 910,550 + -0.6 910,551 - -0.2 910,551 - +0.1 910,551 - +0.1 910,827 + +0.4 910,828 - +1.7 910,900 + +1.0 910,900 + -1.2 910,900 + -2.1 910,900 + +0.1 910,901 - -0.4 910,901 - -1.3 910,901 - +0.2 910,901 - -0.4 910,904 + +0.8 910,904 + +1.6 910,905 - -2.1 910,915 - -0.5 910,915 - +1.4 910,915 - -1.0 911,068 + -2.0 911,068 + +0.4 911,069 - -0.4 911,074 + -0.1 911,074 + -1.0 911,075 - +0.4 911,095 - -0.2 911,135 - +0.4 911,161 - -0.4 911,161 - -0.7 911,161 - +1.2 911,216 + -0.8 911,251 + -0.1 911,263 + +0.3 911,264 - -0.5 911,270 + +0.4 911,270 + +0.8 911,271 - -0.7 911,271 - -1.3 911,316 + +0.4 911,350 + -0.6 911,350 + +0.6 911,351 - +1.4 911,538 + DZA65_RS04370 0.28 -1.6 911,539 - DZA65_RS04370 0.28 -0.6
Or see this region's nucleotide sequence