Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04065 and DZA65_RS22810 are separated by 263 nucleotides DZA65_RS22810 and DZA65_RS04070 are separated by 6 nucleotides DZA65_RS04070 and DZA65_RS04075 overlap by 1 nucleotides
DZA65_RS04065: DZA65_RS04065 - DNA adenine methylase, at 858,513 to 859,373
_RS04065
DZA65_RS22810: DZA65_RS22810 - hypothetical protein, at 859,637 to 859,792
_RS22810
DZA65_RS04070: DZA65_RS04070 - ogr/Delta-like zinc finger family protein, at 859,799 to 860,119
_RS04070
DZA65_RS04075: DZA65_RS04075 - phage portal protein, at 860,119 to 861,147
_RS04075
Position (kb) 859
860
861 Strain fitness (log2 ratio) -2
-1
0
1 at 859.405 kb on - strand at 859.410 kb on - strand at 859.461 kb on + strand at 859.462 kb on - strand at 859.462 kb on - strand at 859.464 kb on + strand at 859.464 kb on + strand at 859.465 kb on - strand at 859.465 kb on - strand at 859.465 kb on - strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.470 kb on + strand at 859.471 kb on - strand at 859.471 kb on - strand at 859.471 kb on - strand at 859.471 kb on - strand at 859.520 kb on - strand at 859.520 kb on - strand at 859.565 kb on - strand at 859.618 kb on + strand at 859.618 kb on + strand at 859.619 kb on - strand at 859.779 kb on + strand at 859.779 kb on + strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.780 kb on - strand at 859.800 kb on + strand at 859.826 kb on + strand at 859.826 kb on + strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.827 kb on - strand at 859.877 kb on + strand, within DZA65_RS04070 at 859.944 kb on + strand, within DZA65_RS04070 at 859.974 kb on + strand, within DZA65_RS04070 at 859.974 kb on + strand, within DZA65_RS04070 at 859.975 kb on - strand, within DZA65_RS04070 at 859.975 kb on - strand, within DZA65_RS04070 at 859.978 kb on + strand, within DZA65_RS04070 at 859.978 kb on + strand, within DZA65_RS04070 at 859.979 kb on - strand, within DZA65_RS04070 at 859.979 kb on - strand, within DZA65_RS04070 at 860.054 kb on + strand, within DZA65_RS04070 at 860.065 kb on + strand, within DZA65_RS04070 at 860.085 kb on - strand, within DZA65_RS04070 at 860.111 kb on - strand at 860.139 kb on + strand at 860.140 kb on - strand at 860.140 kb on - strand at 860.140 kb on - strand at 860.161 kb on + strand at 860.162 kb on - strand at 860.247 kb on - strand, within DZA65_RS04075 at 860.247 kb on - strand, within DZA65_RS04075 at 860.247 kb on - strand, within DZA65_RS04075 at 860.247 kb on - strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.338 kb on + strand, within DZA65_RS04075 at 860.339 kb on - strand, within DZA65_RS04075 at 860.339 kb on - strand, within DZA65_RS04075 at 860.339 kb on - strand, within DZA65_RS04075 at 860.451 kb on + strand, within DZA65_RS04075 at 860.485 kb on + strand, within DZA65_RS04075 at 860.540 kb on + strand, within DZA65_RS04075 at 860.540 kb on + strand, within DZA65_RS04075 at 860.541 kb on - strand, within DZA65_RS04075 at 860.568 kb on + strand, within DZA65_RS04075 at 860.573 kb on + strand, within DZA65_RS04075 at 860.574 kb on - strand, within DZA65_RS04075 at 860.577 kb on - strand, within DZA65_RS04075 at 860.637 kb on - strand, within DZA65_RS04075 at 860.652 kb on - strand, within DZA65_RS04075 at 860.672 kb on + strand, within DZA65_RS04075 at 860.672 kb on + strand, within DZA65_RS04075 at 860.673 kb on - strand, within DZA65_RS04075 at 860.673 kb on - strand, within DZA65_RS04075 at 860.731 kb on + strand, within DZA65_RS04075 at 860.732 kb on - strand, within DZA65_RS04075 at 860.732 kb on - strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.765 kb on + strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.766 kb on - strand, within DZA65_RS04075 at 860.833 kb on - strand, within DZA65_RS04075 at 860.850 kb on - strand, within DZA65_RS04075 at 860.911 kb on + strand, within DZA65_RS04075 at 860.920 kb on - strand, within DZA65_RS04075 at 860.930 kb on + strand, within DZA65_RS04075 at 860.931 kb on - strand, within DZA65_RS04075 at 860.931 kb on - strand, within DZA65_RS04075 at 860.989 kb on + strand, within DZA65_RS04075 at 861.023 kb on + strand, within DZA65_RS04075 at 861.023 kb on + strand, within DZA65_RS04075 at 861.024 kb on - strand, within DZA65_RS04075 at 861.039 kb on - strand, within DZA65_RS04075 at 861.055 kb on + strand at 861.056 kb on - strand at 861.056 kb on - strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.087 kb on + strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand at 861.088 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 859,405 - +0.7 859,410 - +0.0 859,461 + -0.4 859,462 - -0.4 859,462 - -0.6 859,464 + -1.6 859,464 + -0.3 859,465 - -0.5 859,465 - -0.9 859,465 - -0.7 859,470 + -0.5 859,470 + +0.2 859,470 + -0.9 859,470 + +0.2 859,470 + +0.8 859,470 + +0.1 859,470 + -0.6 859,470 + -0.9 859,471 - +0.2 859,471 - +0.8 859,471 - +0.1 859,471 - +0.2 859,520 - -0.2 859,520 - +0.1 859,565 - +0.1 859,618 + -0.2 859,618 + -0.5 859,619 - +0.8 859,779 + +1.1 859,779 + -1.0 859,780 - +0.0 859,780 - +0.0 859,780 - -0.2 859,780 - +0.0 859,780 - -0.6 859,780 - -0.6 859,780 - -0.9 859,780 - -1.2 859,780 - -2.1 859,780 - -1.4 859,800 + -0.1 859,826 + -0.5 859,826 + -0.5 859,827 - -2.2 859,827 - -0.6 859,827 - +0.6 859,827 - +0.5 859,827 - +0.2 859,877 + DZA65_RS04070 0.24 -0.3 859,944 + DZA65_RS04070 0.45 -1.6 859,974 + DZA65_RS04070 0.55 -0.3 859,974 + DZA65_RS04070 0.55 -0.7 859,975 - DZA65_RS04070 0.55 +0.2 859,975 - DZA65_RS04070 0.55 -1.4 859,978 + DZA65_RS04070 0.56 -0.8 859,978 + DZA65_RS04070 0.56 -0.8 859,979 - DZA65_RS04070 0.56 -0.7 859,979 - DZA65_RS04070 0.56 -1.4 860,054 + DZA65_RS04070 0.79 -0.0 860,065 + DZA65_RS04070 0.83 -1.5 860,085 - DZA65_RS04070 0.89 -0.6 860,111 - +0.2 860,139 + +0.1 860,140 - +0.4 860,140 - -0.2 860,140 - +0.6 860,161 + -0.7 860,162 - -0.6 860,247 - DZA65_RS04075 0.12 +0.9 860,247 - DZA65_RS04075 0.12 -0.7 860,247 - DZA65_RS04075 0.12 -0.3 860,247 - DZA65_RS04075 0.12 +0.2 860,338 + DZA65_RS04075 0.21 -0.0 860,338 + DZA65_RS04075 0.21 +0.4 860,338 + DZA65_RS04075 0.21 -0.5 860,338 + DZA65_RS04075 0.21 -0.1 860,338 + DZA65_RS04075 0.21 +0.8 860,338 + DZA65_RS04075 0.21 -1.8 860,339 - DZA65_RS04075 0.21 -0.2 860,339 - DZA65_RS04075 0.21 -0.7 860,339 - DZA65_RS04075 0.21 -0.4 860,451 + DZA65_RS04075 0.32 +0.4 860,485 + DZA65_RS04075 0.36 +0.6 860,540 + DZA65_RS04075 0.41 -1.4 860,540 + DZA65_RS04075 0.41 -0.6 860,541 - DZA65_RS04075 0.41 -0.9 860,568 + DZA65_RS04075 0.44 +0.2 860,573 + DZA65_RS04075 0.44 -0.3 860,574 - DZA65_RS04075 0.44 -1.8 860,577 - DZA65_RS04075 0.45 +0.5 860,637 - DZA65_RS04075 0.50 -0.4 860,652 - DZA65_RS04075 0.52 -0.5 860,672 + DZA65_RS04075 0.54 -2.2 860,672 + DZA65_RS04075 0.54 +0.5 860,673 - DZA65_RS04075 0.54 -1.6 860,673 - DZA65_RS04075 0.54 +0.0 860,731 + DZA65_RS04075 0.59 +0.2 860,732 - DZA65_RS04075 0.60 +0.2 860,732 - DZA65_RS04075 0.60 -2.2 860,765 + DZA65_RS04075 0.63 -1.1 860,765 + DZA65_RS04075 0.63 -0.2 860,765 + DZA65_RS04075 0.63 -0.3 860,765 + DZA65_RS04075 0.63 +0.1 860,766 - DZA65_RS04075 0.63 -1.4 860,766 - DZA65_RS04075 0.63 -0.7 860,766 - DZA65_RS04075 0.63 -0.2 860,766 - DZA65_RS04075 0.63 -0.3 860,766 - DZA65_RS04075 0.63 -0.1 860,833 - DZA65_RS04075 0.69 +0.9 860,850 - DZA65_RS04075 0.71 +0.1 860,911 + DZA65_RS04075 0.77 +0.8 860,920 - DZA65_RS04075 0.78 -0.7 860,930 + DZA65_RS04075 0.79 -2.2 860,931 - DZA65_RS04075 0.79 -0.5 860,931 - DZA65_RS04075 0.79 +0.1 860,989 + DZA65_RS04075 0.85 -0.6 861,023 + DZA65_RS04075 0.88 -0.1 861,023 + DZA65_RS04075 0.88 -0.0 861,024 - DZA65_RS04075 0.88 -0.5 861,039 - DZA65_RS04075 0.89 -0.2 861,055 + -0.7 861,056 - -0.0 861,056 - -0.6 861,087 + -0.4 861,087 + +0.6 861,087 + +0.0 861,087 + +0.1 861,087 + -0.8 861,088 - +0.1 861,088 - -0.9 861,088 - -0.8 861,088 - -0.5 861,088 - +1.2 861,088 - -0.6 861,088 - -0.4 861,088 - -0.1 861,088 - -1.7 861,088 - -0.8 861,088 - +0.0 861,088 - -0.3
Or see this region's nucleotide sequence