Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04025 and DZA65_RS04030 are separated by 19 nucleotides DZA65_RS04030 and DZA65_RS04035 are separated by 71 nucleotides DZA65_RS04035 and DZA65_RS04040 overlap by 1 nucleotides DZA65_RS04040 and DZA65_RS04045 overlap by 4 nucleotides DZA65_RS04045 and DZA65_RS04050 overlap by 1 nucleotides DZA65_RS04050 and DZA65_RS04055 overlap by 4 nucleotides
DZA65_RS04025: DZA65_RS04025 - hypothetical protein, at 851,599 to 851,895
_RS04025
DZA65_RS04030: DZA65_RS04030 - hypothetical protein, at 851,915 to 852,244
_RS04030
DZA65_RS04035: DZA65_RS04035 - DUF2732 domain-containing protein, at 852,316 to 852,546
_RS04035
DZA65_RS04040: DZA65_RS04040 - hypothetical protein, at 852,546 to 852,776
_RS04040
DZA65_RS04045: DZA65_RS04045 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 852,773 to 853,729
_RS04045
DZA65_RS04050: DZA65_RS04050 - DNA cytosine methyltransferase, at 853,729 to 854,557
_RS04050
DZA65_RS04055: DZA65_RS04055 - replication endonuclease, at 854,554 to 856,608
_RS04055
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2 at 851.776 kb on + strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.777 kb on - strand, within DZA65_RS04025 at 851.779 kb on + strand, within DZA65_RS04025 at 851.780 kb on - strand, within DZA65_RS04025 at 851.780 kb on - strand, within DZA65_RS04025 at 851.806 kb on - strand, within DZA65_RS04025 at 851.894 kb on - strand at 851.894 kb on - strand at 851.901 kb on - strand at 851.901 kb on - strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.914 kb on + strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.915 kb on - strand at 851.946 kb on + strand at 851.971 kb on + strand, within DZA65_RS04030 at 852.031 kb on + strand, within DZA65_RS04030 at 852.078 kb on - strand, within DZA65_RS04030 at 852.078 kb on - strand, within DZA65_RS04030 at 852.131 kb on - strand, within DZA65_RS04030 at 852.131 kb on - strand, within DZA65_RS04030 at 852.146 kb on - strand, within DZA65_RS04030 at 852.197 kb on - strand, within DZA65_RS04030 at 852.243 kb on - strand at 852.254 kb on - strand at 852.254 kb on - strand at 852.264 kb on - strand at 852.264 kb on - strand at 852.264 kb on - strand at 852.292 kb on - strand at 852.292 kb on - strand at 852.295 kb on - strand at 852.295 kb on - strand at 852.403 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.498 kb on - strand, within DZA65_RS04035 at 852.659 kb on - strand, within DZA65_RS04040 at 852.659 kb on - strand, within DZA65_RS04040 at 852.659 kb on - strand, within DZA65_RS04040 at 852.701 kb on - strand, within DZA65_RS04040 at 852.773 kb on - strand at 852.773 kb on - strand at 852.847 kb on - strand at 852.920 kb on + strand, within DZA65_RS04045 at 852.921 kb on - strand, within DZA65_RS04045 at 852.921 kb on - strand, within DZA65_RS04045 at 852.959 kb on + strand, within DZA65_RS04045 at 853.028 kb on - strand, within DZA65_RS04045 at 853.040 kb on + strand, within DZA65_RS04045 at 853.041 kb on - strand, within DZA65_RS04045 at 853.041 kb on - strand, within DZA65_RS04045 at 853.043 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.059 kb on + strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.060 kb on - strand, within DZA65_RS04045 at 853.110 kb on - strand, within DZA65_RS04045 at 853.146 kb on - strand, within DZA65_RS04045 at 853.146 kb on - strand, within DZA65_RS04045 at 853.166 kb on - strand, within DZA65_RS04045 at 853.197 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.323 kb on - strand, within DZA65_RS04045 at 853.359 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.392 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.414 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.435 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.482 kb on - strand, within DZA65_RS04045 at 853.496 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.603 kb on - strand, within DZA65_RS04045 at 853.683 kb on - strand at 853.683 kb on - strand at 853.683 kb on - strand at 853.745 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.748 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.791 kb on - strand at 853.828 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.864 kb on - strand, within DZA65_RS04050 at 853.913 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.029 kb on - strand, within DZA65_RS04050 at 854.128 kb on - strand, within DZA65_RS04050 at 854.154 kb on - strand, within DZA65_RS04050 at 854.220 kb on - strand, within DZA65_RS04050 at 854.302 kb on + strand, within DZA65_RS04050 at 854.314 kb on + strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.315 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.348 kb on - strand, within DZA65_RS04050 at 854.352 kb on - strand, within DZA65_RS04050 at 854.394 kb on + strand, within DZA65_RS04050 at 854.395 kb on - strand, within DZA65_RS04050 at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.505 kb on + strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.506 kb on - strand at 854.522 kb on + strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.523 kb on - strand at 854.524 kb on + strand at 854.524 kb on + strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.525 kb on - strand at 854.535 kb on - strand at 854.535 kb on - strand at 854.564 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.653 kb on + strand at 854.654 kb on - strand at 854.669 kb on + strand at 854.669 kb on + strand at 854.669 kb on + strand at 854.670 kb on - strand at 854.670 kb on - strand at 854.670 kb on - strand at 854.680 kb on - strand at 854.710 kb on + strand at 854.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 851,776 + DZA65_RS04025 0.60 -0.3 851,777 - DZA65_RS04025 0.60 -0.5 851,777 - DZA65_RS04025 0.60 -1.2 851,777 - DZA65_RS04025 0.60 +0.5 851,777 - DZA65_RS04025 0.60 -0.7 851,779 + DZA65_RS04025 0.61 +0.3 851,780 - DZA65_RS04025 0.61 +0.4 851,780 - DZA65_RS04025 0.61 -0.6 851,806 - DZA65_RS04025 0.70 -0.0 851,894 - +0.4 851,894 - -1.0 851,901 - -0.3 851,901 - -0.4 851,914 + -0.5 851,914 + -1.3 851,914 + +0.0 851,914 + -0.9 851,914 + +0.2 851,915 - -1.4 851,915 - +0.1 851,915 - -2.1 851,915 - +0.4 851,915 - -2.3 851,915 - -1.5 851,915 - -1.4 851,915 - -0.2 851,946 + +0.6 851,971 + DZA65_RS04030 0.17 -0.3 852,031 + DZA65_RS04030 0.35 +0.7 852,078 - DZA65_RS04030 0.49 +0.4 852,078 - DZA65_RS04030 0.49 -1.3 852,131 - DZA65_RS04030 0.65 +0.1 852,131 - DZA65_RS04030 0.65 -0.7 852,146 - DZA65_RS04030 0.70 -0.2 852,197 - DZA65_RS04030 0.85 +0.3 852,243 - -2.1 852,254 - -0.3 852,254 - -0.3 852,264 - +0.7 852,264 - +1.2 852,264 - +0.1 852,292 - -1.2 852,292 - +1.4 852,295 - +1.4 852,295 - -0.6 852,403 - DZA65_RS04035 0.38 +0.5 852,498 - DZA65_RS04035 0.79 +1.4 852,498 - DZA65_RS04035 0.79 -1.2 852,498 - DZA65_RS04035 0.79 -1.1 852,498 - DZA65_RS04035 0.79 -0.1 852,498 - DZA65_RS04035 0.79 -1.6 852,498 - DZA65_RS04035 0.79 -0.7 852,659 - DZA65_RS04040 0.49 +0.2 852,659 - DZA65_RS04040 0.49 -0.5 852,659 - DZA65_RS04040 0.49 -0.2 852,701 - DZA65_RS04040 0.67 -2.5 852,773 - -0.9 852,773 - -2.4 852,847 - +0.1 852,920 + DZA65_RS04045 0.15 -0.6 852,921 - DZA65_RS04045 0.15 +0.1 852,921 - DZA65_RS04045 0.15 -0.8 852,959 + DZA65_RS04045 0.19 -0.8 853,028 - DZA65_RS04045 0.27 -0.1 853,040 + DZA65_RS04045 0.28 -0.2 853,041 - DZA65_RS04045 0.28 -1.4 853,041 - DZA65_RS04045 0.28 +0.5 853,043 + DZA65_RS04045 0.28 -1.9 853,059 + DZA65_RS04045 0.30 -0.2 853,059 + DZA65_RS04045 0.30 -0.9 853,059 + DZA65_RS04045 0.30 +1.8 853,060 - DZA65_RS04045 0.30 -0.3 853,060 - DZA65_RS04045 0.30 +0.4 853,060 - DZA65_RS04045 0.30 -0.6 853,060 - DZA65_RS04045 0.30 +0.6 853,060 - DZA65_RS04045 0.30 -0.3 853,060 - DZA65_RS04045 0.30 -0.2 853,110 - DZA65_RS04045 0.35 +1.1 853,146 - DZA65_RS04045 0.39 +0.5 853,146 - DZA65_RS04045 0.39 +1.0 853,166 - DZA65_RS04045 0.41 -0.5 853,197 - DZA65_RS04045 0.44 +1.1 853,323 - DZA65_RS04045 0.57 +0.3 853,323 - DZA65_RS04045 0.57 +1.4 853,323 - DZA65_RS04045 0.57 -2.2 853,323 - DZA65_RS04045 0.57 +0.6 853,323 - DZA65_RS04045 0.57 -0.3 853,323 - DZA65_RS04045 0.57 +1.0 853,323 - DZA65_RS04045 0.57 +0.5 853,323 - DZA65_RS04045 0.57 -0.6 853,323 - DZA65_RS04045 0.57 +0.2 853,323 - DZA65_RS04045 0.57 -0.1 853,323 - DZA65_RS04045 0.57 -0.6 853,323 - DZA65_RS04045 0.57 -0.2 853,323 - DZA65_RS04045 0.57 +0.2 853,323 - DZA65_RS04045 0.57 -0.6 853,323 - DZA65_RS04045 0.57 -0.1 853,323 - DZA65_RS04045 0.57 -0.2 853,359 - DZA65_RS04045 0.61 -0.5 853,392 - DZA65_RS04045 0.65 +0.1 853,392 - DZA65_RS04045 0.65 -0.2 853,392 - DZA65_RS04045 0.65 +0.7 853,392 - DZA65_RS04045 0.65 -0.7 853,392 - DZA65_RS04045 0.65 -0.9 853,392 - DZA65_RS04045 0.65 +0.4 853,414 - DZA65_RS04045 0.67 +0.8 853,414 - DZA65_RS04045 0.67 +0.4 853,414 - DZA65_RS04045 0.67 -0.2 853,435 - DZA65_RS04045 0.69 +1.8 853,435 - DZA65_RS04045 0.69 +0.4 853,435 - DZA65_RS04045 0.69 -1.8 853,482 - DZA65_RS04045 0.74 +0.5 853,482 - DZA65_RS04045 0.74 -1.1 853,482 - DZA65_RS04045 0.74 +1.6 853,482 - DZA65_RS04045 0.74 -1.2 853,482 - DZA65_RS04045 0.74 -1.3 853,496 - DZA65_RS04045 0.76 +1.1 853,603 - DZA65_RS04045 0.87 -0.6 853,603 - DZA65_RS04045 0.87 +0.6 853,603 - DZA65_RS04045 0.87 +0.4 853,603 - DZA65_RS04045 0.87 +0.8 853,603 - DZA65_RS04045 0.87 -1.3 853,683 - +0.3 853,683 - -1.4 853,683 - -0.6 853,745 - -0.5 853,748 - -1.6 853,748 - +0.2 853,748 - +1.4 853,748 - +1.4 853,748 - +0.5 853,748 - -0.1 853,791 - +0.4 853,791 - -0.2 853,791 - +1.0 853,791 - -1.9 853,791 - -0.3 853,791 - -0.3 853,828 - DZA65_RS04050 0.12 +0.4 853,864 - DZA65_RS04050 0.16 -0.7 853,864 - DZA65_RS04050 0.16 -0.3 853,864 - DZA65_RS04050 0.16 +0.4 853,913 - DZA65_RS04050 0.22 -0.3 854,029 - DZA65_RS04050 0.36 -0.6 854,029 - DZA65_RS04050 0.36 -0.9 854,029 - DZA65_RS04050 0.36 -0.2 854,029 - DZA65_RS04050 0.36 -0.5 854,029 - DZA65_RS04050 0.36 +0.2 854,029 - DZA65_RS04050 0.36 +0.1 854,128 - DZA65_RS04050 0.48 +1.0 854,154 - DZA65_RS04050 0.51 +1.0 854,220 - DZA65_RS04050 0.59 -1.4 854,302 + DZA65_RS04050 0.69 -0.2 854,314 + DZA65_RS04050 0.71 +0.8 854,315 - DZA65_RS04050 0.71 -0.9 854,315 - DZA65_RS04050 0.71 +0.1 854,315 - DZA65_RS04050 0.71 +0.3 854,348 - DZA65_RS04050 0.75 +1.0 854,348 - DZA65_RS04050 0.75 +1.1 854,348 - DZA65_RS04050 0.75 +0.3 854,348 - DZA65_RS04050 0.75 -0.6 854,352 - DZA65_RS04050 0.75 +1.4 854,394 + DZA65_RS04050 0.80 -0.4 854,395 - DZA65_RS04050 0.80 -1.4 854,505 + -0.9 854,505 + +0.8 854,505 + -1.9 854,505 + +0.4 854,505 + -1.1 854,505 + +1.2 854,506 - -0.4 854,506 - -0.9 854,506 - +0.6 854,506 - +0.6 854,506 - -0.9 854,506 - -0.2 854,522 + -0.6 854,523 - -1.6 854,523 - +0.4 854,523 - -0.4 854,523 - +1.2 854,524 + -1.1 854,524 + -0.6 854,525 - -0.3 854,525 - -0.1 854,525 - -0.2 854,525 - +1.1 854,525 - -0.9 854,525 - -0.9 854,525 - -1.9 854,525 - +1.5 854,525 - +0.6 854,525 - -1.1 854,525 - -1.2 854,525 - -0.9 854,525 - -0.3 854,525 - +1.4 854,525 - -0.5 854,525 - -1.3 854,525 - -0.4 854,525 - -0.7 854,525 - -1.0 854,535 - -1.3 854,535 - -0.5 854,564 + +0.4 854,653 + -0.6 854,653 + -0.6 854,653 + -0.2 854,653 + -0.0 854,653 + -0.5 854,653 + +0.0 854,653 + -2.4 854,654 - -0.9 854,669 + -0.9 854,669 + -0.3 854,669 + -1.2 854,670 - -0.9 854,670 - -0.2 854,670 - +0.0 854,680 - -1.2 854,710 + -0.5 854,711 - -0.1
Or see this region's nucleotide sequence