Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03855 and DZA65_RS03860 are separated by 26 nucleotides DZA65_RS03860 and DZA65_RS03865 are separated by 528 nucleotides
DZA65_RS03855: DZA65_RS03855 - CoA-acylating methylmalonate-semialdehyde dehydrogenase, at 816,492 to 818,003
_RS03855
DZA65_RS03860: DZA65_RS03860 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing), at 818,030 to 819,961
_RS03860
DZA65_RS03865: DZA65_RS03865 - inositol 2-dehydrogenase, at 820,490 to 821,476
_RS03865
Position (kb) 818
819
820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 817.084 kb on + strand, within DZA65_RS03855 at 817.084 kb on + strand, within DZA65_RS03855 at 817.085 kb on - strand, within DZA65_RS03855 at 817.085 kb on - strand, within DZA65_RS03855 at 817.085 kb on - strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.088 kb on + strand, within DZA65_RS03855 at 817.089 kb on - strand, within DZA65_RS03855 at 817.089 kb on - strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.185 kb on + strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand at 817.186 kb on - strand, within DZA65_RS03855 at 817.186 kb on - strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.191 kb on + strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.192 kb on - strand, within DZA65_RS03855 at 817.253 kb on + strand, within DZA65_RS03855 at 817.253 kb on + strand, within DZA65_RS03855 at 817.253 kb on + strand, within DZA65_RS03855 at 817.254 kb on - strand, within DZA65_RS03855 at 817.254 kb on - strand, within DZA65_RS03855 at 817.254 kb on - strand, within DZA65_RS03855 at 817.258 kb on + strand, within DZA65_RS03855 at 817.259 kb on - strand, within DZA65_RS03855 at 817.496 kb on + strand, within DZA65_RS03855 at 817.503 kb on + strand at 817.503 kb on + strand, within DZA65_RS03855 at 817.503 kb on + strand, within DZA65_RS03855 at 817.503 kb on + strand, within DZA65_RS03855 at 817.504 kb on - strand, within DZA65_RS03855 at 817.504 kb on - strand, within DZA65_RS03855 at 817.505 kb on + strand, within DZA65_RS03855 at 817.505 kb on + strand, within DZA65_RS03855 at 817.506 kb on - strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.584 kb on + strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.585 kb on - strand, within DZA65_RS03855 at 817.722 kb on + strand, within DZA65_RS03855 at 817.741 kb on + strand, within DZA65_RS03855 at 817.809 kb on - strand, within DZA65_RS03855 at 817.809 kb on - strand, within DZA65_RS03855 at 817.887 kb on + strand at 817.888 kb on - strand at 817.888 kb on - strand at 817.888 kb on - strand at 817.911 kb on + strand at 817.912 kb on - strand at 817.977 kb on - strand at 818.001 kb on + strand at 818.001 kb on + strand at 818.001 kb on + strand at 818.002 kb on - strand at 818.002 kb on - strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.035 kb on + strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.036 kb on - strand at 818.087 kb on + strand at 818.087 kb on + strand at 818.087 kb on + strand at 818.087 kb on + strand at 818.088 kb on - strand at 818.088 kb on - strand at 818.088 kb on - strand at 818.088 kb on - strand at 818.282 kb on + strand, within DZA65_RS03860 at 818.484 kb on - strand, within DZA65_RS03860 at 818.544 kb on + strand, within DZA65_RS03860 at 818.713 kb on + strand, within DZA65_RS03860 at 818.753 kb on + strand, within DZA65_RS03860 at 818.797 kb on + strand, within DZA65_RS03860 at 818.797 kb on + strand, within DZA65_RS03860 at 818.798 kb on - strand, within DZA65_RS03860 at 818.798 kb on - strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.401 kb on + strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.402 kb on - strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.413 kb on + strand, within DZA65_RS03860 at 819.414 kb on - strand, within DZA65_RS03860 at 819.414 kb on - strand, within DZA65_RS03860 at 819.414 kb on - strand, within DZA65_RS03860 at 819.419 kb on + strand, within DZA65_RS03860 at 819.419 kb on + strand, within DZA65_RS03860 at 819.435 kb on - strand, within DZA65_RS03860 at 819.488 kb on + strand, within DZA65_RS03860 at 819.512 kb on + strand, within DZA65_RS03860 at 819.512 kb on + strand, within DZA65_RS03860 at 819.513 kb on - strand, within DZA65_RS03860 at 819.513 kb on - strand, within DZA65_RS03860 at 819.565 kb on - strand, within DZA65_RS03860 at 819.728 kb on + strand, within DZA65_RS03860 at 819.933 kb on + strand at 819.933 kb on + strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.934 kb on - strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.956 kb on + strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.957 kb on - strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.959 kb on + strand at 819.960 kb on - strand at 819.960 kb on - strand at 819.998 kb on + strand at 819.999 kb on - strand at 820.045 kb on + strand at 820.045 kb on + strand at 820.045 kb on + strand at 820.046 kb on - strand at 820.046 kb on - strand at 820.046 kb on - strand at 820.067 kb on + strand at 820.067 kb on + strand at 820.068 kb on - strand at 820.110 kb on + strand at 820.111 kb on - strand at 820.134 kb on + strand at 820.134 kb on + strand at 820.171 kb on - strand at 820.174 kb on + strand at 820.174 kb on + strand at 820.228 kb on - strand at 820.228 kb on - strand at 820.244 kb on - strand at 820.247 kb on - strand at 820.259 kb on + strand at 820.260 kb on - strand at 820.286 kb on - strand at 820.286 kb on - strand at 820.286 kb on - strand at 820.327 kb on + strand at 820.327 kb on + strand at 820.338 kb on + strand at 820.338 kb on + strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.339 kb on - strand at 820.419 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.424 kb on - strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.448 kb on + strand at 820.449 kb on - strand at 820.485 kb on + strand at 820.486 kb on - strand at 820.495 kb on + strand at 820.495 kb on + strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.575 kb on - strand at 820.625 kb on + strand, within DZA65_RS03865 at 820.625 kb on + strand, within DZA65_RS03865 at 820.626 kb on - strand, within DZA65_RS03865 at 820.626 kb on - strand, within DZA65_RS03865 at 820.674 kb on + strand, within DZA65_RS03865 at 820.690 kb on - strand, within DZA65_RS03865 at 820.690 kb on - strand, within DZA65_RS03865 at 820.856 kb on + strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865 at 820.931 kb on - strand, within DZA65_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 817,084 + DZA65_RS03855 0.39 +0.5 817,084 + DZA65_RS03855 0.39 -1.0 817,085 - DZA65_RS03855 0.39 -0.6 817,085 - DZA65_RS03855 0.39 +0.1 817,085 - DZA65_RS03855 0.39 +0.6 817,088 + DZA65_RS03855 0.39 -1.4 817,088 + DZA65_RS03855 0.39 +1.7 817,088 + DZA65_RS03855 0.39 +0.4 817,088 + DZA65_RS03855 0.39 -1.9 817,089 - DZA65_RS03855 0.39 -0.8 817,089 - DZA65_RS03855 0.39 +0.0 817,185 + DZA65_RS03855 0.46 -0.2 817,185 + DZA65_RS03855 0.46 +0.8 817,185 + DZA65_RS03855 0.46 -1.6 817,185 + DZA65_RS03855 0.46 +0.7 817,186 - DZA65_RS03855 0.46 +1.1 817,186 - DZA65_RS03855 0.46 +1.2 817,186 - DZA65_RS03855 0.46 -0.4 817,186 - DZA65_RS03855 0.46 +0.8 817,186 - DZA65_RS03855 0.46 +0.0 817,186 - -0.9 817,186 - DZA65_RS03855 0.46 +0.8 817,186 - DZA65_RS03855 0.46 +0.9 817,191 + DZA65_RS03855 0.46 -0.0 817,191 + DZA65_RS03855 0.46 -0.6 817,191 + DZA65_RS03855 0.46 +0.1 817,191 + DZA65_RS03855 0.46 +0.2 817,191 + DZA65_RS03855 0.46 -1.4 817,192 - DZA65_RS03855 0.46 -0.3 817,192 - DZA65_RS03855 0.46 -0.3 817,192 - DZA65_RS03855 0.46 +0.1 817,192 - DZA65_RS03855 0.46 +0.4 817,253 + DZA65_RS03855 0.50 +0.4 817,253 + DZA65_RS03855 0.50 +0.4 817,253 + DZA65_RS03855 0.50 +2.0 817,254 - DZA65_RS03855 0.50 -0.6 817,254 - DZA65_RS03855 0.50 -0.6 817,254 - DZA65_RS03855 0.50 -0.6 817,258 + DZA65_RS03855 0.51 -0.1 817,259 - DZA65_RS03855 0.51 -1.8 817,496 + DZA65_RS03855 0.66 +1.0 817,503 + +0.7 817,503 + DZA65_RS03855 0.67 -0.5 817,503 + DZA65_RS03855 0.67 +0.7 817,503 + DZA65_RS03855 0.67 -0.6 817,504 - DZA65_RS03855 0.67 -0.4 817,504 - DZA65_RS03855 0.67 -0.0 817,505 + DZA65_RS03855 0.67 -0.7 817,505 + DZA65_RS03855 0.67 -1.0 817,506 - DZA65_RS03855 0.67 -0.2 817,584 + DZA65_RS03855 0.72 +0.6 817,584 + DZA65_RS03855 0.72 -0.2 817,584 + DZA65_RS03855 0.72 -1.9 817,584 + DZA65_RS03855 0.72 +0.2 817,585 - DZA65_RS03855 0.72 -0.9 817,585 - DZA65_RS03855 0.72 -0.6 817,585 - DZA65_RS03855 0.72 -0.4 817,585 - DZA65_RS03855 0.72 -1.0 817,722 + DZA65_RS03855 0.81 -0.7 817,741 + DZA65_RS03855 0.83 +0.3 817,809 - DZA65_RS03855 0.87 -0.2 817,809 - DZA65_RS03855 0.87 -0.2 817,887 + +0.4 817,888 - -0.3 817,888 - +0.3 817,888 - +1.4 817,911 + +0.4 817,912 - -0.5 817,977 - -0.0 818,001 + -1.6 818,001 + +0.4 818,001 + -0.3 818,002 - +0.2 818,002 - -0.7 818,035 + +0.1 818,035 + -0.3 818,035 + -0.2 818,035 + +0.3 818,035 + -1.4 818,035 + +1.4 818,036 - +0.4 818,036 - -1.2 818,036 - -0.6 818,036 - +0.4 818,036 - -0.8 818,087 + -0.5 818,087 + +0.0 818,087 + +0.2 818,087 + -1.7 818,088 - -0.7 818,088 - +0.4 818,088 - -0.8 818,088 - -0.4 818,282 + DZA65_RS03860 0.13 +0.2 818,484 - DZA65_RS03860 0.23 +0.3 818,544 + DZA65_RS03860 0.27 -0.3 818,713 + DZA65_RS03860 0.35 +0.3 818,753 + DZA65_RS03860 0.37 +0.7 818,797 + DZA65_RS03860 0.40 -2.2 818,797 + DZA65_RS03860 0.40 +0.2 818,798 - DZA65_RS03860 0.40 -2.2 818,798 - DZA65_RS03860 0.40 +0.7 819,401 + DZA65_RS03860 0.71 -1.6 819,401 + DZA65_RS03860 0.71 +1.0 819,401 + DZA65_RS03860 0.71 -1.3 819,401 + DZA65_RS03860 0.71 -0.6 819,402 - DZA65_RS03860 0.71 +0.3 819,402 - -1.2 819,402 - DZA65_RS03860 0.71 -1.5 819,402 - DZA65_RS03860 0.71 +1.0 819,402 - DZA65_RS03860 0.71 +0.2 819,402 - DZA65_RS03860 0.71 -0.2 819,413 + DZA65_RS03860 0.72 -0.3 819,413 + DZA65_RS03860 0.72 -0.6 819,413 + DZA65_RS03860 0.72 -1.3 819,413 + DZA65_RS03860 0.72 +0.5 819,414 - DZA65_RS03860 0.72 +0.9 819,414 - DZA65_RS03860 0.72 +0.3 819,414 - DZA65_RS03860 0.72 +0.7 819,419 + DZA65_RS03860 0.72 -0.2 819,419 + DZA65_RS03860 0.72 -0.2 819,435 - DZA65_RS03860 0.73 +0.6 819,488 + DZA65_RS03860 0.75 +2.4 819,512 + DZA65_RS03860 0.77 +0.0 819,512 + DZA65_RS03860 0.77 +0.4 819,513 - DZA65_RS03860 0.77 +0.4 819,513 - DZA65_RS03860 0.77 +0.4 819,565 - DZA65_RS03860 0.79 -1.4 819,728 + DZA65_RS03860 0.88 +0.6 819,933 + -0.8 819,933 + +0.2 819,934 - -0.8 819,934 - -1.1 819,934 - -1.3 819,934 - -0.3 819,956 + -0.5 819,956 + +0.4 819,956 + -0.5 819,956 + -0.4 819,957 - -1.9 819,957 - +0.7 819,957 - -1.2 819,957 - +0.1 819,957 - -0.4 819,957 - +0.4 819,957 - -0.2 819,959 + -1.8 819,959 + -1.8 819,959 + -0.5 819,959 + -1.2 819,960 - -0.4 819,960 - +0.6 819,998 + +0.3 819,999 - -0.6 820,045 + +0.4 820,045 + -1.5 820,045 + -0.6 820,046 - +0.6 820,046 - +0.7 820,046 - -0.6 820,067 + +1.0 820,067 + -1.4 820,068 - -0.2 820,110 + +0.6 820,111 - -0.4 820,134 + -0.3 820,134 + +0.0 820,171 - -1.0 820,174 + -0.4 820,174 + +0.2 820,228 - -0.1 820,228 - +0.1 820,244 - -1.8 820,247 - -0.6 820,259 + -0.6 820,260 - -1.8 820,286 - +0.7 820,286 - +0.2 820,286 - +0.6 820,327 + +0.6 820,327 + +0.9 820,338 + -0.1 820,338 + -0.3 820,339 - -0.3 820,339 - +0.3 820,339 - -0.4 820,339 - +0.2 820,419 - -0.3 820,424 - +0.2 820,424 - +0.6 820,424 - -0.3 820,424 - +0.2 820,424 - +0.2 820,448 + +0.0 820,448 + -1.4 820,448 + -0.5 820,448 + +0.8 820,448 + -0.1 820,448 + +0.1 820,449 - -0.5 820,485 + -1.0 820,486 - -1.0 820,495 + -0.1 820,495 + +0.2 820,575 - -0.8 820,575 - -0.4 820,575 - -0.6 820,575 - -1.2 820,625 + DZA65_RS03865 0.14 -0.6 820,625 + DZA65_RS03865 0.14 -0.7 820,626 - DZA65_RS03865 0.14 -0.1 820,626 - DZA65_RS03865 0.14 +0.0 820,674 + DZA65_RS03865 0.19 +0.4 820,690 - DZA65_RS03865 0.20 +0.9 820,690 - DZA65_RS03865 0.20 -0.7 820,856 + DZA65_RS03865 0.37 +0.3 820,931 - DZA65_RS03865 0.45 -0.5 820,931 - DZA65_RS03865 0.45 +0.6 820,931 - DZA65_RS03865 0.45 +0.8 820,931 - DZA65_RS03865 0.45 +0.2 820,931 - DZA65_RS03865 0.45 -1.0 820,931 - DZA65_RS03865 0.45 -0.8
Or see this region's nucleotide sequence