Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03765 and DZA65_RS03770 overlap by 14 nucleotides DZA65_RS03770 and DZA65_RS03775 overlap by 4 nucleotides DZA65_RS03775 and DZA65_RS03780 are separated by 198 nucleotides
DZA65_RS03765: DZA65_RS03765 - DHA2 family efflux MFS transporter permease subunit, at 796,083 to 797,687
_RS03765
DZA65_RS03770: DZA65_RS03770 - HlyD family secretion protein, at 797,674 to 798,831
_RS03770
DZA65_RS03775: DZA65_RS03775 - MarR family transcriptional regulator, at 798,828 to 799,283
_RS03775
DZA65_RS03780: DZA65_RS03780 - PLP-dependent aminotransferase family protein, at 799,482 to 800,966
_RS03780
Position (kb) 797
798
799 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 796.713 kb on + strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.713 kb on + strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.714 kb on - strand, within DZA65_RS03765 at 796.788 kb on + strand, within DZA65_RS03765 at 796.788 kb on + strand, within DZA65_RS03765 at 796.789 kb on - strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.805 kb on + strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.806 kb on - strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.807 kb on + strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.808 kb on - strand, within DZA65_RS03765 at 796.819 kb on + strand, within DZA65_RS03765 at 796.819 kb on + strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.820 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.851 kb on - strand, within DZA65_RS03765 at 796.904 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.052 kb on - strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.096 kb on + strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.097 kb on - strand, within DZA65_RS03765 at 797.232 kb on + strand, within DZA65_RS03765 at 797.232 kb on + strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.233 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.236 kb on - strand, within DZA65_RS03765 at 797.248 kb on + strand, within DZA65_RS03765 at 797.248 kb on + strand, within DZA65_RS03765 at 797.249 kb on - strand at 797.249 kb on - strand, within DZA65_RS03765 at 797.249 kb on - strand, within DZA65_RS03765 at 797.249 kb on - strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.431 kb on + strand, within DZA65_RS03765 at 797.432 kb on - strand, within DZA65_RS03765 at 797.432 kb on - strand, within DZA65_RS03765 at 797.571 kb on + strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.572 kb on - strand at 797.644 kb on + strand at 797.645 kb on - strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.648 kb on + strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.649 kb on - strand at 797.764 kb on - strand at 797.764 kb on - strand at 797.928 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.041 kb on + strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand, within DZA65_RS03770 at 798.042 kb on - strand at 798.363 kb on + strand, within DZA65_RS03770 at 798.364 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.492 kb on - strand, within DZA65_RS03770 at 798.565 kb on + strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.566 kb on - strand, within DZA65_RS03770 at 798.774 kb on + strand at 798.775 kb on - strand at 798.790 kb on + strand at 798.790 kb on + strand at 798.791 kb on - strand at 798.791 kb on - strand at 798.791 kb on - strand at 798.826 kb on - strand at 798.826 kb on - strand at 798.899 kb on + strand, within DZA65_RS03775 at 798.900 kb on - strand, within DZA65_RS03775 at 798.966 kb on + strand, within DZA65_RS03775 at 798.967 kb on - strand, within DZA65_RS03775 at 799.167 kb on - strand, within DZA65_RS03775 at 799.167 kb on - strand at 799.183 kb on + strand, within DZA65_RS03775 at 799.300 kb on + strand at 799.300 kb on + strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.301 kb on - strand at 799.389 kb on + strand at 799.389 kb on + strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.390 kb on - strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.406 kb on + strand at 799.407 kb on - strand at 799.407 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.419 kb on - strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.446 kb on + strand at 799.447 kb on - strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.487 kb on + strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.488 kb on - strand at 799.497 kb on + strand at 799.498 kb on - strand at 799.498 kb on - strand at 799.498 kb on - strand at 799.542 kb on - strand at 799.542 kb on - strand at 799.542 kb on - strand at 799.574 kb on + strand at 799.574 kb on + strand at 799.575 kb on - strand at 799.644 kb on + strand, within DZA65_RS03780 at 799.644 kb on + strand, within DZA65_RS03780 at 799.644 kb on + strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.645 kb on - strand, within DZA65_RS03780 at 799.683 kb on - strand, within DZA65_RS03780 at 799.683 kb on - strand, within DZA65_RS03780 at 799.711 kb on - strand, within DZA65_RS03780 at 799.711 kb on - strand, within DZA65_RS03780 at 799.804 kb on + strand, within DZA65_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 796,713 + DZA65_RS03765 0.39 -1.5 796,713 + DZA65_RS03765 0.39 -0.4 796,713 + DZA65_RS03765 0.39 -0.2 796,714 - DZA65_RS03765 0.39 -0.2 796,714 - DZA65_RS03765 0.39 +1.0 796,714 - DZA65_RS03765 0.39 -0.9 796,714 - DZA65_RS03765 0.39 -0.2 796,714 - DZA65_RS03765 0.39 -1.7 796,788 + DZA65_RS03765 0.44 +0.2 796,788 + DZA65_RS03765 0.44 -0.2 796,789 - DZA65_RS03765 0.44 -0.4 796,805 + DZA65_RS03765 0.45 +0.8 796,805 + DZA65_RS03765 0.45 +0.7 796,805 + DZA65_RS03765 0.45 -0.8 796,805 + DZA65_RS03765 0.45 +0.8 796,806 - DZA65_RS03765 0.45 -0.4 796,806 - DZA65_RS03765 0.45 -0.2 796,806 - DZA65_RS03765 0.45 +0.4 796,806 - DZA65_RS03765 0.45 -0.4 796,807 + DZA65_RS03765 0.45 -0.9 796,807 + DZA65_RS03765 0.45 +0.5 796,807 + DZA65_RS03765 0.45 +1.4 796,807 + DZA65_RS03765 0.45 -0.4 796,807 + DZA65_RS03765 0.45 -0.2 796,807 + DZA65_RS03765 0.45 +2.1 796,807 + DZA65_RS03765 0.45 +0.3 796,807 + DZA65_RS03765 0.45 +0.6 796,807 + DZA65_RS03765 0.45 -0.9 796,807 + DZA65_RS03765 0.45 -0.4 796,807 + DZA65_RS03765 0.45 -1.0 796,807 + DZA65_RS03765 0.45 +0.9 796,807 + DZA65_RS03765 0.45 -0.4 796,807 + DZA65_RS03765 0.45 +0.9 796,807 + DZA65_RS03765 0.45 -0.6 796,808 - DZA65_RS03765 0.45 -1.4 796,808 - DZA65_RS03765 0.45 +0.4 796,808 - DZA65_RS03765 0.45 +0.4 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - DZA65_RS03765 0.45 -0.6 796,808 - +2.4 796,808 - DZA65_RS03765 0.45 +1.4 796,808 - DZA65_RS03765 0.45 +0.6 796,808 - DZA65_RS03765 0.45 -0.3 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - DZA65_RS03765 0.45 -2.3 796,808 - DZA65_RS03765 0.45 -0.2 796,808 - DZA65_RS03765 0.45 +0.6 796,819 + DZA65_RS03765 0.46 -0.9 796,819 + DZA65_RS03765 0.46 +0.3 796,820 - DZA65_RS03765 0.46 -1.7 796,820 - DZA65_RS03765 0.46 +1.2 796,820 - DZA65_RS03765 0.46 -1.0 796,851 - DZA65_RS03765 0.48 -0.2 796,851 - DZA65_RS03765 0.48 -0.2 796,851 - DZA65_RS03765 0.48 +0.2 796,851 - DZA65_RS03765 0.48 +0.3 796,904 - DZA65_RS03765 0.51 +0.3 797,052 - DZA65_RS03765 0.60 -0.1 797,052 - DZA65_RS03765 0.60 -0.2 797,052 - DZA65_RS03765 0.60 +0.4 797,096 + DZA65_RS03765 0.63 -0.7 797,096 + DZA65_RS03765 0.63 -0.7 797,096 + DZA65_RS03765 0.63 -1.3 797,097 - DZA65_RS03765 0.63 -1.0 797,097 - DZA65_RS03765 0.63 +0.5 797,097 - DZA65_RS03765 0.63 -0.4 797,097 - DZA65_RS03765 0.63 -0.4 797,232 + DZA65_RS03765 0.72 +0.4 797,232 + DZA65_RS03765 0.72 -1.7 797,233 - DZA65_RS03765 0.72 -0.3 797,233 - DZA65_RS03765 0.72 -0.3 797,233 - DZA65_RS03765 0.72 +0.1 797,236 - DZA65_RS03765 0.72 -0.0 797,236 - DZA65_RS03765 0.72 -1.3 797,236 - DZA65_RS03765 0.72 +0.4 797,248 + DZA65_RS03765 0.73 +0.6 797,248 + DZA65_RS03765 0.73 -0.2 797,249 - +1.0 797,249 - DZA65_RS03765 0.73 +0.0 797,249 - DZA65_RS03765 0.73 -1.4 797,249 - DZA65_RS03765 0.73 +0.4 797,431 + DZA65_RS03765 0.84 +0.8 797,431 + DZA65_RS03765 0.84 +0.7 797,431 + DZA65_RS03765 0.84 +1.4 797,431 + DZA65_RS03765 0.84 +0.3 797,432 - DZA65_RS03765 0.84 +0.6 797,432 - DZA65_RS03765 0.84 -0.2 797,571 + -2.4 797,572 - -1.4 797,572 - -0.2 797,572 - +0.6 797,572 - +1.8 797,572 - -0.5 797,572 - -0.3 797,572 - -0.1 797,572 - +0.5 797,644 + -0.3 797,645 - +0.8 797,648 + -1.0 797,648 + -1.1 797,648 + +0.1 797,648 + +0.3 797,648 + -0.4 797,648 + +0.7 797,648 + +0.7 797,648 + -0.7 797,648 + +1.1 797,648 + -1.1 797,648 + -1.7 797,649 - -0.1 797,649 - -0.6 797,649 - -0.9 797,649 - -1.0 797,649 - -0.7 797,649 - -1.9 797,649 - -0.1 797,649 - +0.9 797,649 - +0.0 797,764 - -0.5 797,764 - +1.1 797,928 + DZA65_RS03770 0.22 -0.1 798,041 + DZA65_RS03770 0.32 -0.7 798,041 + DZA65_RS03770 0.32 -0.6 798,041 + DZA65_RS03770 0.32 +0.5 798,041 + DZA65_RS03770 0.32 -0.1 798,042 - DZA65_RS03770 0.32 +0.5 798,042 - DZA65_RS03770 0.32 +0.1 798,042 - +0.9 798,363 + DZA65_RS03770 0.59 +0.4 798,364 - DZA65_RS03770 0.60 -0.2 798,492 - DZA65_RS03770 0.71 +0.3 798,492 - DZA65_RS03770 0.71 +0.1 798,565 + DZA65_RS03770 0.77 -0.3 798,566 - DZA65_RS03770 0.77 +1.4 798,566 - DZA65_RS03770 0.77 +0.9 798,774 + +1.1 798,775 - -0.2 798,790 + +0.2 798,790 + -1.2 798,791 - -1.3 798,791 - -0.4 798,791 - +0.3 798,826 - +0.4 798,826 - +0.1 798,899 + DZA65_RS03775 0.16 +0.4 798,900 - DZA65_RS03775 0.16 -0.9 798,966 + DZA65_RS03775 0.30 -0.8 798,967 - DZA65_RS03775 0.30 +0.2 799,167 - DZA65_RS03775 0.74 -0.8 799,167 - +0.2 799,183 + DZA65_RS03775 0.78 +1.2 799,300 + -1.9 799,300 + -0.6 799,301 - +1.4 799,301 - -0.4 799,301 - +0.1 799,301 - +0.4 799,389 + -1.4 799,389 + +0.1 799,390 - -0.2 799,390 - +0.1 799,390 - +0.6 799,406 + -0.7 799,406 + +2.8 799,406 + -1.0 799,406 + +0.8 799,406 + +0.0 799,407 - -0.9 799,407 - -1.2 799,419 - -1.0 799,419 - -0.2 799,419 - +0.2 799,419 - +0.3 799,446 + -0.2 799,446 + -0.4 799,446 + -1.4 799,446 + +0.4 799,447 - -1.2 799,487 + -1.0 799,487 + +0.6 799,487 + -1.0 799,487 + +1.1 799,487 + +0.7 799,487 + -1.6 799,488 - -1.1 799,488 - +0.4 799,488 - -0.2 799,488 - -0.6 799,488 - -1.6 799,488 - -1.5 799,488 - -0.0 799,488 - -0.3 799,488 - -0.7 799,497 + -0.7 799,498 - +0.6 799,498 - -0.2 799,498 - -0.5 799,542 - +0.3 799,542 - -0.2 799,542 - -0.7 799,574 + -0.6 799,574 + -1.7 799,575 - -2.3 799,644 + DZA65_RS03780 0.11 -0.2 799,644 + DZA65_RS03780 0.11 -0.3 799,644 + DZA65_RS03780 0.11 +0.3 799,645 - DZA65_RS03780 0.11 +0.1 799,645 - DZA65_RS03780 0.11 -1.0 799,645 - DZA65_RS03780 0.11 -0.4 799,645 - DZA65_RS03780 0.11 +1.2 799,683 - DZA65_RS03780 0.14 -0.9 799,683 - DZA65_RS03780 0.14 +0.3 799,711 - DZA65_RS03780 0.15 -0.2 799,711 - DZA65_RS03780 0.15 -0.1 799,804 + DZA65_RS03780 0.22 +1.0
Or see this region's nucleotide sequence