Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03495

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03485 and DZA65_RS03490 are separated by 89 nucleotidesDZA65_RS03490 and DZA65_RS03495 are separated by 23 nucleotidesDZA65_RS03495 and DZA65_RS03500 are separated by 166 nucleotides DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906 _RS03485 DZA65_RS03490: DZA65_RS03490 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 736,996 to 737,712 _RS03490 DZA65_RS03495: DZA65_RS03495 - single-stranded-DNA-specific exonuclease RecJ, at 737,736 to 739,466 _RS03495 DZA65_RS03500: DZA65_RS03500 - peptide chain release factor 2, at 739,633 to 740,731 _RS03500 Position (kb) 737 738 739 740Strain fitness (log2 ratio) -2 -1 0 1 2at 736.981 kb on + strandat 736.981 kb on + strandat 736.989 kb on + strandat 736.989 kb on + strandat 736.989 kb on + strandat 736.989 kb on + strandat 737.009 kb on + strandat 737.009 kb on + strandat 737.009 kb on + strandat 737.010 kb on - strandat 737.010 kb on - strandat 737.010 kb on - strandat 737.010 kb on - strandat 737.010 kb on - strandat 737.010 kb on - strandat 737.012 kb on + strandat 737.013 kb on - strandat 737.013 kb on - strandat 737.013 kb on - strandat 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.170 kb on + strand, within DZA65_RS03490at 737.171 kb on - strand, within DZA65_RS03490at 737.171 kb on - strand, within DZA65_RS03490at 737.171 kb on - strand, within DZA65_RS03490at 737.171 kb on - strand, within DZA65_RS03490at 737.212 kb on + strand, within DZA65_RS03490at 737.212 kb on + strand, within DZA65_RS03490at 737.212 kb on + strand, within DZA65_RS03490at 737.212 kb on + strand, within DZA65_RS03490at 737.213 kb on - strand, within DZA65_RS03490at 737.253 kb on + strand, within DZA65_RS03490at 737.254 kb on - strand, within DZA65_RS03490at 737.381 kb on + strand, within DZA65_RS03490at 737.381 kb on + strand, within DZA65_RS03490at 737.381 kb on + strand, within DZA65_RS03490at 737.381 kb on + strand, within DZA65_RS03490at 737.382 kb on - strand, within DZA65_RS03490at 737.389 kb on + strand, within DZA65_RS03490at 737.389 kb on + strand, within DZA65_RS03490at 737.389 kb on + strand, within DZA65_RS03490at 737.389 kb on + strand, within DZA65_RS03490at 737.389 kb on + strand, within DZA65_RS03490at 737.390 kb on - strand, within DZA65_RS03490at 737.390 kb on - strand, within DZA65_RS03490at 737.390 kb on - strand, within DZA65_RS03490at 737.391 kb on + strand, within DZA65_RS03490at 737.391 kb on + strand, within DZA65_RS03490at 737.391 kb on + strand, within DZA65_RS03490at 737.392 kb on - strand, within DZA65_RS03490at 737.392 kb on - strand, within DZA65_RS03490at 737.392 kb on - strand, within DZA65_RS03490at 737.392 kb on - strand, within DZA65_RS03490at 737.392 kb on - strand, within DZA65_RS03490at 737.392 kb on - strand, within DZA65_RS03490at 737.425 kb on + strand, within DZA65_RS03490at 737.425 kb on + strand, within DZA65_RS03490at 737.547 kb on + strand, within DZA65_RS03490at 737.548 kb on - strand, within DZA65_RS03490at 737.710 kb on + strandat 737.727 kb on + strandat 737.786 kb on - strandat 737.820 kb on + strandat 737.821 kb on - strandat 737.836 kb on + strandat 738.045 kb on + strand, within DZA65_RS03495at 738.045 kb on + strand, within DZA65_RS03495at 738.045 kb on + strand, within DZA65_RS03495at 738.046 kb on - strand, within DZA65_RS03495at 738.084 kb on - strand, within DZA65_RS03495at 738.128 kb on + strand, within DZA65_RS03495at 738.468 kb on - strand, within DZA65_RS03495at 738.487 kb on + strand, within DZA65_RS03495at 738.629 kb on + strand, within DZA65_RS03495at 738.629 kb on + strand, within DZA65_RS03495at 738.629 kb on + strand, within DZA65_RS03495at 738.630 kb on - strand, within DZA65_RS03495at 738.630 kb on - strand, within DZA65_RS03495at 738.630 kb on - strand, within DZA65_RS03495at 738.630 kb on - strand, within DZA65_RS03495at 738.630 kb on - strand, within DZA65_RS03495at 738.813 kb on + strand, within DZA65_RS03495at 738.813 kb on + strand, within DZA65_RS03495at 738.813 kb on + strand, within DZA65_RS03495at 738.813 kb on + strand, within DZA65_RS03495at 738.813 kb on + strand, within DZA65_RS03495at 738.814 kb on - strand, within DZA65_RS03495at 738.814 kb on - strand, within DZA65_RS03495at 738.814 kb on - strand, within DZA65_RS03495at 738.814 kb on - strand, within DZA65_RS03495at 738.981 kb on - strand, within DZA65_RS03495at 738.981 kb on - strand, within DZA65_RS03495at 739.392 kb on + strandat 739.393 kb on - strandat 739.432 kb on + strandat 739.433 kb on - strandat 739.433 kb on - strandat 739.433 kb on - strandat 739.465 kb on - strandat 739.465 kb on - strandat 739.478 kb on + strandat 739.479 kb on - strandat 739.486 kb on - strandat 739.486 kb on - strandat 739.551 kb on + strandat 739.553 kb on + strandat 739.553 kb on + strandat 739.588 kb on + strandat 739.588 kb on + strandat 739.588 kb on + strandat 739.588 kb on + strandat 739.588 kb on + strandat 739.618 kb on + strandat 739.618 kb on + strandat 739.618 kb on + strandat 739.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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736,981 + -0.6
736,981 + -0.3
736,989 + +0.0
736,989 + +0.5
736,989 + -0.7
736,989 + -0.6
737,009 + +0.1
737,009 + -0.8
737,009 + +0.3
737,010 - -0.4
737,010 - +0.4
737,010 - +0.4
737,010 - -2.6
737,010 - +1.0
737,010 - -0.0
737,012 + +1.4
737,013 - +0.4
737,013 - -1.4
737,013 - -0.6
737,170 + DZA65_RS03490 0.24 -0.1
737,170 + DZA65_RS03490 0.24 +1.1
737,170 + DZA65_RS03490 0.24 -0.1
737,170 + DZA65_RS03490 0.24 +1.2
737,170 + DZA65_RS03490 0.24 -1.7
737,170 + DZA65_RS03490 0.24 -1.4
737,170 + DZA65_RS03490 0.24 +0.7
737,170 + DZA65_RS03490 0.24 +0.0
737,170 + DZA65_RS03490 0.24 +0.1
737,170 + DZA65_RS03490 0.24 +0.6
737,171 - DZA65_RS03490 0.24 +0.9
737,171 - DZA65_RS03490 0.24 +0.2
737,171 - DZA65_RS03490 0.24 -0.6
737,171 - DZA65_RS03490 0.24 -0.6
737,212 + DZA65_RS03490 0.30 -0.1
737,212 + DZA65_RS03490 0.30 +0.6
737,212 + DZA65_RS03490 0.30 -1.1
737,212 + DZA65_RS03490 0.30 -0.3
737,213 - DZA65_RS03490 0.30 -0.3
737,253 + DZA65_RS03490 0.36 +0.9
737,254 - DZA65_RS03490 0.36 +0.1
737,381 + DZA65_RS03490 0.54 +0.0
737,381 + DZA65_RS03490 0.54 +0.3
737,381 + DZA65_RS03490 0.54 -0.0
737,381 + DZA65_RS03490 0.54 -1.1
737,382 - DZA65_RS03490 0.54 -1.2
737,389 + DZA65_RS03490 0.55 -0.7
737,389 + DZA65_RS03490 0.55 -1.1
737,389 + DZA65_RS03490 0.55 -0.4
737,389 + DZA65_RS03490 0.55 -0.4
737,389 + DZA65_RS03490 0.55 +0.5
737,390 - DZA65_RS03490 0.55 +1.1
737,390 - DZA65_RS03490 0.55 +0.7
737,390 - DZA65_RS03490 0.55 -0.6
737,391 + DZA65_RS03490 0.55 +0.2
737,391 + DZA65_RS03490 0.55 -0.3
737,391 + DZA65_RS03490 0.55 +0.0
737,392 - DZA65_RS03490 0.55 +0.1
737,392 - DZA65_RS03490 0.55 -0.6
737,392 - DZA65_RS03490 0.55 +1.0
737,392 - DZA65_RS03490 0.55 -0.1
737,392 - DZA65_RS03490 0.55 -1.8
737,392 - DZA65_RS03490 0.55 +1.0
737,425 + DZA65_RS03490 0.60 +0.0
737,425 + DZA65_RS03490 0.60 +0.2
737,547 + DZA65_RS03490 0.77 -0.6
737,548 - DZA65_RS03490 0.77 -0.3
737,710 + -0.5
737,727 + -0.1
737,786 - -1.4
737,820 + +0.6
737,821 - +0.4
737,836 + -1.6
738,045 + DZA65_RS03495 0.18 -0.0
738,045 + DZA65_RS03495 0.18 -0.4
738,045 + DZA65_RS03495 0.18 -0.9
738,046 - DZA65_RS03495 0.18 +1.2
738,084 - DZA65_RS03495 0.20 -1.9
738,128 + DZA65_RS03495 0.23 -0.8
738,468 - DZA65_RS03495 0.42 -2.5
738,487 + DZA65_RS03495 0.43 -1.4
738,629 + DZA65_RS03495 0.52 +0.0
738,629 + DZA65_RS03495 0.52 +0.2
738,629 + DZA65_RS03495 0.52 -0.9
738,630 - DZA65_RS03495 0.52 -0.6
738,630 - DZA65_RS03495 0.52 -0.0
738,630 - DZA65_RS03495 0.52 -0.3
738,630 - DZA65_RS03495 0.52 +0.2
738,630 - DZA65_RS03495 0.52 -0.1
738,813 + DZA65_RS03495 0.62 -0.9
738,813 + DZA65_RS03495 0.62 -0.4
738,813 + DZA65_RS03495 0.62 -0.6
738,813 + DZA65_RS03495 0.62 -1.4
738,813 + DZA65_RS03495 0.62 -0.9
738,814 - DZA65_RS03495 0.62 +0.4
738,814 - DZA65_RS03495 0.62 +0.4
738,814 - DZA65_RS03495 0.62 -1.4
738,814 - DZA65_RS03495 0.62 -1.2
738,981 - DZA65_RS03495 0.72 -0.5
738,981 - DZA65_RS03495 0.72 -0.4
739,392 + -1.1
739,393 - -0.9
739,432 + -0.9
739,433 - +0.4
739,433 - +0.1
739,433 - -1.9
739,465 - +1.9
739,465 - -0.5
739,478 + -0.2
739,479 - -1.7
739,486 - -0.9
739,486 - +1.8
739,551 + +0.1
739,553 + -0.9
739,553 + +0.0
739,588 + -2.3
739,588 + -1.1
739,588 + -0.4
739,588 + +0.4
739,588 + +0.4
739,618 + -1.7
739,618 + -1.1
739,618 + +0.7
739,618 + -1.0

Or see this region's nucleotide sequence