Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03170 and DZA65_RS03175 are separated by 103 nucleotides DZA65_RS03175 and DZA65_RS03180 are separated by 264 nucleotides DZA65_RS03180 and DZA65_RS03185 are separated by 123 nucleotides
DZA65_RS03170: DZA65_RS03170 - Obg family GTPase CgtA, at 672,765 to 673,940
_RS03170
DZA65_RS03175: DZA65_RS03175 - serine-type D-Ala-D-Ala carboxypeptidase, at 674,044 to 675,477
_RS03175
DZA65_RS03180: DZA65_RS03180 - transcription elongation factor GreA, at 675,742 to 676,218
_RS03180
DZA65_RS03185: DZA65_RS03185 - ribosome assembly RNA-binding protein YhbY, at 676,342 to 676,635
_RS03185
Position (kb) 674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 673.747 kb on + strand, within DZA65_RS03170 at 673.747 kb on + strand, within DZA65_RS03170 at 673.747 kb on + strand, within DZA65_RS03170 at 673.833 kb on + strand at 673.834 kb on - strand at 673.947 kb on + strand at 673.987 kb on + strand at 673.987 kb on + strand at 673.987 kb on + strand at 673.987 kb on + strand at 673.988 kb on - strand at 673.988 kb on - strand at 673.988 kb on - strand at 673.998 kb on - strand at 674.057 kb on + strand at 674.057 kb on + strand at 674.057 kb on + strand at 674.058 kb on - strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.059 kb on + strand at 674.060 kb on - strand at 674.060 kb on - strand at 674.060 kb on - strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.061 kb on + strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.062 kb on - strand at 674.070 kb on - strand at 674.147 kb on + strand at 674.147 kb on + strand at 674.147 kb on + strand at 674.148 kb on - strand at 674.148 kb on - strand at 674.187 kb on + strand at 674.188 kb on - strand, within DZA65_RS03175 at 674.188 kb on - strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.204 kb on + strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.205 kb on - strand, within DZA65_RS03175 at 674.281 kb on + strand, within DZA65_RS03175 at 674.281 kb on + strand, within DZA65_RS03175 at 674.282 kb on - strand, within DZA65_RS03175 at 674.282 kb on - strand, within DZA65_RS03175 at 674.282 kb on - strand, within DZA65_RS03175 at 674.316 kb on + strand, within DZA65_RS03175 at 674.317 kb on - strand, within DZA65_RS03175 at 674.321 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.351 kb on + strand, within DZA65_RS03175 at 674.352 kb on - strand, within DZA65_RS03175 at 674.352 kb on - strand, within DZA65_RS03175 at 674.352 kb on - strand, within DZA65_RS03175 at 674.356 kb on + strand, within DZA65_RS03175 at 674.357 kb on - strand, within DZA65_RS03175 at 674.357 kb on - strand, within DZA65_RS03175 at 674.357 kb on - strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand, within DZA65_RS03175 at 674.391 kb on + strand at 674.392 kb on - strand, within DZA65_RS03175 at 674.392 kb on - strand, within DZA65_RS03175 at 674.392 kb on - strand, within DZA65_RS03175 at 674.392 kb on - strand, within DZA65_RS03175 at 674.427 kb on + strand, within DZA65_RS03175 at 674.428 kb on - strand, within DZA65_RS03175 at 674.620 kb on + strand, within DZA65_RS03175 at 674.621 kb on - strand, within DZA65_RS03175 at 674.717 kb on + strand, within DZA65_RS03175 at 674.718 kb on - strand, within DZA65_RS03175 at 674.718 kb on - strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.734 kb on + strand, within DZA65_RS03175 at 674.735 kb on - strand, within DZA65_RS03175 at 674.735 kb on - strand, within DZA65_RS03175 at 674.735 kb on - strand, within DZA65_RS03175 at 674.832 kb on - strand, within DZA65_RS03175 at 674.894 kb on + strand, within DZA65_RS03175 at 674.894 kb on + strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.895 kb on - strand, within DZA65_RS03175 at 674.940 kb on + strand, within DZA65_RS03175 at 674.941 kb on - strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.942 kb on + strand, within DZA65_RS03175 at 674.943 kb on - strand, within DZA65_RS03175 at 674.943 kb on - strand, within DZA65_RS03175 at 675.013 kb on - strand, within DZA65_RS03175 at 675.013 kb on - strand, within DZA65_RS03175 at 675.073 kb on + strand, within DZA65_RS03175 at 675.073 kb on + strand, within DZA65_RS03175 at 675.073 kb on + strand, within DZA65_RS03175 at 675.074 kb on - strand, within DZA65_RS03175 at 675.074 kb on - strand, within DZA65_RS03175 at 675.074 kb on - strand, within DZA65_RS03175 at 675.118 kb on + strand, within DZA65_RS03175 at 675.118 kb on + strand, within DZA65_RS03175 at 675.118 kb on + strand, within DZA65_RS03175 at 675.119 kb on - strand, within DZA65_RS03175 at 675.187 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.207 kb on + strand, within DZA65_RS03175 at 675.323 kb on + strand, within DZA65_RS03175 at 675.340 kb on - strand at 675.392 kb on + strand at 675.393 kb on - strand at 675.401 kb on + strand at 675.401 kb on + strand at 675.402 kb on - strand at 675.402 kb on - strand at 675.402 kb on - strand at 675.478 kb on - strand at 675.478 kb on - strand at 675.492 kb on - strand at 675.492 kb on - strand at 675.512 kb on + strand at 675.512 kb on + strand at 675.513 kb on - strand at 675.513 kb on - strand at 675.513 kb on - strand at 675.513 kb on - strand at 675.515 kb on + strand at 675.516 kb on - strand at 675.537 kb on + strand at 675.538 kb on - strand at 675.626 kb on + strand at 675.626 kb on + strand at 675.627 kb on - strand at 675.636 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.684 kb on + strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.685 kb on - strand at 675.727 kb on - strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.732 kb on + strand at 675.742 kb on - strand at 675.783 kb on - strand at 675.828 kb on + strand, within DZA65_RS03180 at 675.828 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.883 kb on + strand, within DZA65_RS03180 at 675.884 kb on - strand, within DZA65_RS03180 at 675.884 kb on - strand, within DZA65_RS03180 at 675.964 kb on - strand, within DZA65_RS03180 at 676.012 kb on - strand, within DZA65_RS03180 at 676.054 kb on + strand, within DZA65_RS03180 at 676.054 kb on + strand, within DZA65_RS03180 at 676.055 kb on - strand, within DZA65_RS03180 at 676.055 kb on - strand, within DZA65_RS03180 at 676.059 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.098 kb on + strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.099 kb on - strand, within DZA65_RS03180 at 676.133 kb on + strand, within DZA65_RS03180 at 676.184 kb on + strand at 676.184 kb on + strand at 676.185 kb on - strand at 676.185 kb on - strand at 676.210 kb on + strand at 676.211 kb on - strand at 676.211 kb on - strand at 676.251 kb on + strand at 676.251 kb on + strand at 676.279 kb on + strand at 676.383 kb on - strand, within DZA65_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 673,747 + DZA65_RS03170 0.84 -1.7 673,747 + DZA65_RS03170 0.84 +0.6 673,747 + DZA65_RS03170 0.84 -0.5 673,833 + -0.5 673,834 - +0.3 673,947 + +0.0 673,987 + +0.4 673,987 + +0.3 673,987 + -1.3 673,987 + +0.5 673,988 - +4.3 673,988 - -1.6 673,988 - -0.7 673,998 - -0.1 674,057 + -1.1 674,057 + -1.2 674,057 + +1.0 674,058 - +0.7 674,059 + -0.3 674,059 + -1.3 674,059 + +0.0 674,059 + -0.5 674,059 + -0.3 674,060 - -0.1 674,060 - -0.9 674,060 - -0.1 674,061 + +1.0 674,061 + +0.5 674,061 + -0.3 674,061 + -0.3 674,061 + -2.0 674,061 + +0.1 674,061 + +0.1 674,062 - -1.1 674,062 - -0.1 674,062 - +1.2 674,062 - -1.0 674,062 - -1.9 674,062 - -0.1 674,062 - -0.0 674,062 - +0.2 674,062 - +1.9 674,062 - +0.4 674,062 - +0.0 674,070 - -0.3 674,147 + +0.9 674,147 + -0.5 674,147 + -1.0 674,148 - -1.1 674,148 - -0.4 674,187 + +1.3 674,188 - DZA65_RS03175 0.10 +0.0 674,188 - DZA65_RS03175 0.10 +0.6 674,204 + DZA65_RS03175 0.11 -1.9 674,204 + DZA65_RS03175 0.11 -0.1 674,204 + DZA65_RS03175 0.11 +0.1 674,204 + DZA65_RS03175 0.11 +0.1 674,205 - DZA65_RS03175 0.11 +1.5 674,205 - DZA65_RS03175 0.11 +1.0 674,205 - DZA65_RS03175 0.11 -0.9 674,205 - DZA65_RS03175 0.11 +1.3 674,281 + DZA65_RS03175 0.17 +2.0 674,281 + DZA65_RS03175 0.17 -0.4 674,282 - DZA65_RS03175 0.17 -0.5 674,282 - DZA65_RS03175 0.17 +1.3 674,282 - DZA65_RS03175 0.17 +0.9 674,316 + DZA65_RS03175 0.19 -2.3 674,317 - DZA65_RS03175 0.19 +0.6 674,321 + DZA65_RS03175 0.19 -0.7 674,351 + DZA65_RS03175 0.21 +0.6 674,351 + DZA65_RS03175 0.21 +0.3 674,351 + DZA65_RS03175 0.21 -0.3 674,351 + DZA65_RS03175 0.21 +0.4 674,352 - DZA65_RS03175 0.21 +1.5 674,352 - DZA65_RS03175 0.21 -0.6 674,352 - DZA65_RS03175 0.21 +0.5 674,356 + DZA65_RS03175 0.22 -1.5 674,357 - DZA65_RS03175 0.22 +0.5 674,357 - DZA65_RS03175 0.22 -0.1 674,357 - DZA65_RS03175 0.22 -0.1 674,391 + DZA65_RS03175 0.24 -1.9 674,391 + DZA65_RS03175 0.24 -0.1 674,391 + DZA65_RS03175 0.24 +0.1 674,391 + DZA65_RS03175 0.24 -0.3 674,391 + DZA65_RS03175 0.24 -0.9 674,391 + +0.9 674,392 - DZA65_RS03175 0.24 +0.0 674,392 - DZA65_RS03175 0.24 +0.1 674,392 - DZA65_RS03175 0.24 +0.3 674,392 - DZA65_RS03175 0.24 +0.5 674,427 + DZA65_RS03175 0.27 -0.3 674,428 - DZA65_RS03175 0.27 -0.1 674,620 + DZA65_RS03175 0.40 +0.4 674,621 - DZA65_RS03175 0.40 +0.3 674,717 + DZA65_RS03175 0.47 -0.7 674,718 - DZA65_RS03175 0.47 -0.1 674,718 - DZA65_RS03175 0.47 +0.8 674,734 + DZA65_RS03175 0.48 -0.1 674,734 + DZA65_RS03175 0.48 +0.3 674,734 + DZA65_RS03175 0.48 -0.8 674,734 + DZA65_RS03175 0.48 +0.2 674,735 - DZA65_RS03175 0.48 -1.7 674,735 - DZA65_RS03175 0.48 +0.5 674,735 - DZA65_RS03175 0.48 +0.1 674,832 - DZA65_RS03175 0.55 -0.7 674,894 + DZA65_RS03175 0.59 +0.2 674,894 + DZA65_RS03175 0.59 +1.3 674,895 - DZA65_RS03175 0.59 -0.7 674,895 - DZA65_RS03175 0.59 -0.5 674,895 - DZA65_RS03175 0.59 -0.9 674,895 - DZA65_RS03175 0.59 -1.6 674,940 + DZA65_RS03175 0.62 +0.3 674,941 - DZA65_RS03175 0.63 -0.1 674,942 + DZA65_RS03175 0.63 -0.9 674,942 + DZA65_RS03175 0.63 +0.3 674,942 + DZA65_RS03175 0.63 -0.7 674,942 + DZA65_RS03175 0.63 +0.5 674,942 + DZA65_RS03175 0.63 -0.5 674,943 - DZA65_RS03175 0.63 -0.5 674,943 - DZA65_RS03175 0.63 -1.9 675,013 - DZA65_RS03175 0.68 -1.9 675,013 - DZA65_RS03175 0.68 +0.8 675,073 + DZA65_RS03175 0.72 +0.5 675,073 + DZA65_RS03175 0.72 +2.5 675,073 + DZA65_RS03175 0.72 +1.9 675,074 - DZA65_RS03175 0.72 -0.4 675,074 - DZA65_RS03175 0.72 +0.5 675,074 - DZA65_RS03175 0.72 -0.5 675,118 + DZA65_RS03175 0.75 +0.5 675,118 + DZA65_RS03175 0.75 +1.5 675,118 + DZA65_RS03175 0.75 +0.4 675,119 - DZA65_RS03175 0.75 +0.1 675,187 + DZA65_RS03175 0.80 -1.0 675,207 + DZA65_RS03175 0.81 -0.8 675,207 + DZA65_RS03175 0.81 +0.3 675,207 + DZA65_RS03175 0.81 +1.3 675,207 + DZA65_RS03175 0.81 -0.8 675,323 + DZA65_RS03175 0.89 +0.1 675,340 - -0.2 675,392 + +1.2 675,393 - -1.3 675,401 + -0.1 675,401 + +1.5 675,402 - -0.3 675,402 - -2.9 675,402 - +0.0 675,478 - +1.6 675,478 - -0.2 675,492 - +1.0 675,492 - -0.3 675,512 + -0.3 675,512 + +0.0 675,513 - +0.5 675,513 - +0.5 675,513 - +0.1 675,513 - +1.0 675,515 + -0.2 675,516 - +0.5 675,537 + -1.2 675,538 - -1.8 675,626 + -0.1 675,626 + +0.0 675,627 - -0.0 675,636 + +1.0 675,684 + +0.1 675,684 + +1.0 675,684 + +0.9 675,684 + +0.0 675,684 + +0.1 675,684 + -0.5 675,685 - -1.7 675,685 - +0.9 675,685 - -1.6 675,685 - -0.3 675,685 - +0.0 675,727 - -0.2 675,732 + -2.3 675,732 + -0.1 675,732 + +0.7 675,732 + -1.0 675,732 + -0.3 675,742 - +0.6 675,783 - +0.5 675,828 + DZA65_RS03180 0.18 +0.1 675,828 + DZA65_RS03180 0.18 +0.1 675,883 + DZA65_RS03180 0.30 -0.9 675,883 + DZA65_RS03180 0.30 +0.0 675,883 + DZA65_RS03180 0.30 -1.0 675,884 - DZA65_RS03180 0.30 +0.2 675,884 - DZA65_RS03180 0.30 -0.3 675,964 - DZA65_RS03180 0.47 -1.3 676,012 - DZA65_RS03180 0.57 +1.3 676,054 + DZA65_RS03180 0.65 -1.0 676,054 + DZA65_RS03180 0.65 -0.4 676,055 - DZA65_RS03180 0.66 -0.1 676,055 - DZA65_RS03180 0.66 +0.7 676,059 + DZA65_RS03180 0.66 -1.9 676,098 + DZA65_RS03180 0.75 +0.6 676,098 + DZA65_RS03180 0.75 +0.5 676,098 + DZA65_RS03180 0.75 -0.3 676,099 - DZA65_RS03180 0.75 -0.8 676,099 - DZA65_RS03180 0.75 -0.5 676,099 - DZA65_RS03180 0.75 +0.1 676,099 - DZA65_RS03180 0.75 +0.4 676,099 - DZA65_RS03180 0.75 -1.3 676,099 - DZA65_RS03180 0.75 -0.2 676,133 + DZA65_RS03180 0.82 -0.1 676,184 + -0.6 676,184 + +0.9 676,185 - -1.3 676,185 - +0.1 676,210 + +0.5 676,211 - -0.1 676,211 - -0.5 676,251 + -0.3 676,251 + -2.1 676,279 + -1.1 676,383 - DZA65_RS03185 0.14 -0.1
Or see this region's nucleotide sequence