Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03165

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03150 and DZA65_RS03155 are separated by 260 nucleotidesDZA65_RS03155 and DZA65_RS03160 are separated by 19 nucleotidesDZA65_RS03160 and DZA65_RS03165 are separated by 103 nucleotidesDZA65_RS03165 and DZA65_RS03170 are separated by 266 nucleotides DZA65_RS03150: DZA65_RS03150 - octaprenyl diphosphate synthase, at 669,630 to 670,601 _RS03150 DZA65_RS03155: DZA65_RS03155 - 50S ribosomal protein L21, at 670,862 to 671,173 _RS03155 DZA65_RS03160: DZA65_RS03160 - 50S ribosomal protein L27, at 671,193 to 671,450 _RS03160 DZA65_RS03165: DZA65_RS03165 - DMT family transporter, at 671,554 to 672,498 _RS03165 DZA65_RS03170: DZA65_RS03170 - Obg family GTPase CgtA, at 672,765 to 673,940 _RS03170 Position (kb) 671 672 673Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 670.643 kb on - strandat 670.676 kb on - strandat 670.676 kb on - strandat 670.676 kb on - strandat 670.676 kb on - strandat 670.676 kb on - strandat 670.676 kb on - strandat 670.676 kb on - strandat 670.688 kb on - strandat 670.688 kb on - strandat 670.728 kb on + strandat 670.729 kb on - strandat 670.729 kb on - strandat 670.756 kb on + strandat 670.756 kb on + strandat 670.756 kb on + strandat 670.756 kb on + strandat 670.757 kb on - strandat 670.757 kb on - strandat 671.504 kb on + strandat 671.504 kb on + strandat 671.505 kb on - strandat 671.510 kb on + strandat 671.511 kb on - strandat 671.523 kb on - strandat 671.534 kb on + strandat 671.603 kb on + strandat 671.603 kb on + strandat 671.603 kb on + strandat 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.659 kb on + strand, within DZA65_RS03165at 671.660 kb on - strand, within DZA65_RS03165at 671.660 kb on - strand, within DZA65_RS03165at 671.660 kb on - strand, within DZA65_RS03165at 671.660 kb on - strand, within DZA65_RS03165at 671.660 kb on - strand, within DZA65_RS03165at 671.660 kb on - strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.661 kb on + strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.662 kb on - strand, within DZA65_RS03165at 671.665 kb on - strand, within DZA65_RS03165at 671.665 kb on - strand, within DZA65_RS03165at 671.665 kb on - strand, within DZA65_RS03165at 671.675 kb on - strand, within DZA65_RS03165at 671.716 kb on + strand, within DZA65_RS03165at 671.820 kb on + strand, within DZA65_RS03165at 671.820 kb on + strand, within DZA65_RS03165at 671.821 kb on - strand, within DZA65_RS03165at 671.821 kb on - strand, within DZA65_RS03165at 671.821 kb on - strand, within DZA65_RS03165at 671.837 kb on - strand, within DZA65_RS03165at 671.837 kb on - strand, within DZA65_RS03165at 671.970 kb on - strand, within DZA65_RS03165at 671.970 kb on - strand, within DZA65_RS03165at 671.988 kb on + strand, within DZA65_RS03165at 671.988 kb on + strand, within DZA65_RS03165at 671.988 kb on + strand, within DZA65_RS03165at 671.988 kb on + strand, within DZA65_RS03165at 671.989 kb on - strand, within DZA65_RS03165at 671.989 kb on - strand, within DZA65_RS03165at 671.989 kb on - strand, within DZA65_RS03165at 672.022 kb on + strand, within DZA65_RS03165at 672.022 kb on + strand, within DZA65_RS03165at 672.022 kb on + strand, within DZA65_RS03165at 672.022 kb on + strand, within DZA65_RS03165at 672.023 kb on - strand, within DZA65_RS03165at 672.023 kb on - strand, within DZA65_RS03165at 672.035 kb on + strand, within DZA65_RS03165at 672.035 kb on + strand, within DZA65_RS03165at 672.035 kb on + strand, within DZA65_RS03165at 672.035 kb on + strand, within DZA65_RS03165at 672.036 kb on - strand, within DZA65_RS03165at 672.036 kb on - strandat 672.073 kb on + strand, within DZA65_RS03165at 672.074 kb on - strand, within DZA65_RS03165at 672.136 kb on + strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.137 kb on - strand, within DZA65_RS03165at 672.138 kb on + strand, within DZA65_RS03165at 672.138 kb on + strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.139 kb on - strand, within DZA65_RS03165at 672.149 kb on + strand, within DZA65_RS03165at 672.149 kb on + strand, within DZA65_RS03165at 672.149 kb on + strand, within DZA65_RS03165at 672.149 kb on + strand, within DZA65_RS03165at 672.149 kb on + strand, within DZA65_RS03165at 672.150 kb on - strand, within DZA65_RS03165at 672.156 kb on + strand, within DZA65_RS03165at 672.156 kb on + strand, within DZA65_RS03165at 672.157 kb on - strand, within DZA65_RS03165at 672.157 kb on - strand, within DZA65_RS03165at 672.198 kb on + strand, within DZA65_RS03165at 672.198 kb on + strandat 672.199 kb on - strand, within DZA65_RS03165at 672.199 kb on - strand, within DZA65_RS03165at 672.218 kb on + strand, within DZA65_RS03165at 672.218 kb on + strand, within DZA65_RS03165at 672.219 kb on - strand, within DZA65_RS03165at 672.270 kb on + strand, within DZA65_RS03165at 672.309 kb on + strand, within DZA65_RS03165at 672.314 kb on + strand, within DZA65_RS03165at 672.314 kb on + strand, within DZA65_RS03165at 672.315 kb on - strand, within DZA65_RS03165at 672.403 kb on + strand, within DZA65_RS03165at 672.470 kb on + strandat 672.470 kb on + strandat 672.470 kb on + strandat 672.500 kb on + strandat 672.500 kb on + strandat 672.500 kb on + strandat 672.501 kb on - strandat 672.501 kb on - strandat 672.505 kb on - strandat 672.505 kb on - strandat 672.505 kb on - strandat 672.510 kb on + strandat 672.510 kb on + strandat 672.510 kb on + strandat 672.510 kb on + strandat 672.510 kb on + strandat 672.510 kb on + strandat 672.510 kb on + strandat 672.511 kb on - strandat 672.572 kb on - strandat 672.599 kb on + strandat 672.599 kb on + strandat 672.599 kb on + strandat 672.661 kb on + strandat 672.661 kb on + strandat 672.661 kb on + strandat 672.661 kb on + strandat 672.661 kb on + strandat 672.661 kb on + strandat 672.661 kb on + strandat 672.670 kb on + strandat 672.711 kb on + strandat 672.711 kb on + strandat 672.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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670,643 - -0.7
670,676 - -0.8
670,676 - -0.6
670,676 - -0.7
670,676 - -0.1
670,676 - -0.1
670,676 - +0.7
670,676 - -0.4
670,688 - -2.0
670,688 - -0.9
670,728 + +0.0
670,729 - +0.9
670,729 - -1.2
670,756 + -0.0
670,756 + +0.5
670,756 + -0.9
670,756 + -0.5
670,757 - -1.2
670,757 - +0.5
671,504 + -0.3
671,504 + -0.3
671,505 - -0.7
671,510 + -0.1
671,511 - +0.9
671,523 - +0.2
671,534 + -1.1
671,603 + -2.1
671,603 + -1.9
671,603 + -0.0
671,659 + DZA65_RS03165 0.11 +0.7
671,659 + DZA65_RS03165 0.11 -1.7
671,659 + DZA65_RS03165 0.11 -0.2
671,659 + DZA65_RS03165 0.11 +0.0
671,659 + DZA65_RS03165 0.11 -0.6
671,659 + DZA65_RS03165 0.11 -0.3
671,659 + DZA65_RS03165 0.11 -0.9
671,659 + DZA65_RS03165 0.11 -1.4
671,660 - DZA65_RS03165 0.11 +1.6
671,660 - DZA65_RS03165 0.11 -0.9
671,660 - DZA65_RS03165 0.11 -0.5
671,660 - DZA65_RS03165 0.11 -1.3
671,660 - DZA65_RS03165 0.11 -0.3
671,660 - DZA65_RS03165 0.11 -0.9
671,661 + DZA65_RS03165 0.11 -0.1
671,661 + DZA65_RS03165 0.11 +0.5
671,661 + DZA65_RS03165 0.11 -0.5
671,661 + DZA65_RS03165 0.11 +0.5
671,661 + DZA65_RS03165 0.11 +0.1
671,661 + DZA65_RS03165 0.11 -0.3
671,661 + DZA65_RS03165 0.11 +0.2
671,661 + DZA65_RS03165 0.11 -0.9
671,661 + DZA65_RS03165 0.11 -2.1
671,661 + DZA65_RS03165 0.11 +0.1
671,661 + DZA65_RS03165 0.11 -0.5
671,661 + DZA65_RS03165 0.11 +0.0
671,661 + DZA65_RS03165 0.11 +1.5
671,661 + DZA65_RS03165 0.11 -2.9
671,662 - DZA65_RS03165 0.11 -2.1
671,662 - DZA65_RS03165 0.11 -0.2
671,662 - DZA65_RS03165 0.11 -0.1
671,662 - DZA65_RS03165 0.11 -0.1
671,662 - DZA65_RS03165 0.11 -1.3
671,662 - DZA65_RS03165 0.11 -1.4
671,662 - DZA65_RS03165 0.11 -0.9
671,662 - DZA65_RS03165 0.11 -1.5
671,662 - DZA65_RS03165 0.11 +0.5
671,662 - DZA65_RS03165 0.11 -0.7
671,662 - DZA65_RS03165 0.11 -1.1
671,662 - DZA65_RS03165 0.11 -1.7
671,662 - DZA65_RS03165 0.11 -0.5
671,662 - DZA65_RS03165 0.11 -0.4
671,662 - DZA65_RS03165 0.11 -1.1
671,662 - DZA65_RS03165 0.11 -0.0
671,662 - DZA65_RS03165 0.11 +0.1
671,665 - DZA65_RS03165 0.12 +0.2
671,665 - DZA65_RS03165 0.12 +0.2
671,665 - DZA65_RS03165 0.12 +0.8
671,675 - DZA65_RS03165 0.13 +0.5
671,716 + DZA65_RS03165 0.17 +0.3
671,820 + DZA65_RS03165 0.28 -1.3
671,820 + DZA65_RS03165 0.28 +0.2
671,821 - DZA65_RS03165 0.28 -0.2
671,821 - DZA65_RS03165 0.28 -0.3
671,821 - DZA65_RS03165 0.28 -0.2
671,837 - DZA65_RS03165 0.30 +1.5
671,837 - DZA65_RS03165 0.30 -1.5
671,970 - DZA65_RS03165 0.44 -1.4
671,970 - DZA65_RS03165 0.44 +0.3
671,988 + DZA65_RS03165 0.46 +0.5
671,988 + DZA65_RS03165 0.46 -0.2
671,988 + DZA65_RS03165 0.46 -0.1
671,988 + DZA65_RS03165 0.46 +1.0
671,989 - DZA65_RS03165 0.46 -0.7
671,989 - DZA65_RS03165 0.46 -0.4
671,989 - DZA65_RS03165 0.46 -0.8
672,022 + DZA65_RS03165 0.50 +0.7
672,022 + DZA65_RS03165 0.50 -0.9
672,022 + DZA65_RS03165 0.50 -0.1
672,022 + DZA65_RS03165 0.50 -0.5
672,023 - DZA65_RS03165 0.50 -1.0
672,023 - DZA65_RS03165 0.50 -1.7
672,035 + DZA65_RS03165 0.51 -1.1
672,035 + DZA65_RS03165 0.51 -1.0
672,035 + DZA65_RS03165 0.51 -0.2
672,035 + DZA65_RS03165 0.51 -1.1
672,036 - DZA65_RS03165 0.51 +0.7
672,036 - +0.1
672,073 + DZA65_RS03165 0.55 -1.3
672,074 - DZA65_RS03165 0.55 +0.0
672,136 + DZA65_RS03165 0.62 -0.3
672,137 - DZA65_RS03165 0.62 -1.1
672,137 - DZA65_RS03165 0.62 +0.2
672,137 - DZA65_RS03165 0.62 +0.1
672,137 - DZA65_RS03165 0.62 -0.9
672,137 - DZA65_RS03165 0.62 -0.1
672,137 - DZA65_RS03165 0.62 -0.1
672,137 - DZA65_RS03165 0.62 -0.5
672,137 - DZA65_RS03165 0.62 -1.1
672,138 + DZA65_RS03165 0.62 -0.1
672,138 + DZA65_RS03165 0.62 +0.1
672,139 - DZA65_RS03165 0.62 +0.9
672,139 - DZA65_RS03165 0.62 -0.8
672,139 - DZA65_RS03165 0.62 -0.0
672,139 - DZA65_RS03165 0.62 -0.6
672,139 - DZA65_RS03165 0.62 -0.2
672,139 - DZA65_RS03165 0.62 +1.5
672,139 - DZA65_RS03165 0.62 -2.3
672,149 + DZA65_RS03165 0.63 +0.2
672,149 + DZA65_RS03165 0.63 -0.6
672,149 + DZA65_RS03165 0.63 -0.3
672,149 + DZA65_RS03165 0.63 -0.7
672,149 + DZA65_RS03165 0.63 +0.0
672,150 - DZA65_RS03165 0.63 -1.1
672,156 + DZA65_RS03165 0.64 -1.9
672,156 + DZA65_RS03165 0.64 -0.4
672,157 - DZA65_RS03165 0.64 +0.7
672,157 - DZA65_RS03165 0.64 +0.1
672,198 + DZA65_RS03165 0.68 -0.8
672,198 + +0.5
672,199 - DZA65_RS03165 0.68 -0.5
672,199 - DZA65_RS03165 0.68 -0.1
672,218 + DZA65_RS03165 0.70 +0.8
672,218 + DZA65_RS03165 0.70 -0.7
672,219 - DZA65_RS03165 0.70 +0.2
672,270 + DZA65_RS03165 0.76 -0.5
672,309 + DZA65_RS03165 0.80 -0.0
672,314 + DZA65_RS03165 0.80 -1.2
672,314 + DZA65_RS03165 0.80 -1.4
672,315 - DZA65_RS03165 0.81 +0.5
672,403 + DZA65_RS03165 0.90 +0.0
672,470 + -0.9
672,470 + +0.2
672,470 + -1.2
672,500 + -0.2
672,500 + +0.7
672,500 + +1.5
672,501 - +0.1
672,501 - +0.1
672,505 - -1.2
672,505 - +2.0
672,505 - -0.9
672,510 + +0.9
672,510 + -2.0
672,510 + +0.2
672,510 + -1.3
672,510 + +0.1
672,510 + +1.8
672,510 + -0.8
672,511 - -0.0
672,572 - -0.5
672,599 + -1.1
672,599 + -1.0
672,599 + +0.2
672,661 + -0.6
672,661 + -0.1
672,661 + -0.5
672,661 + -0.5
672,661 + -0.0
672,661 + -0.9
672,661 + -0.0
672,670 + -1.1
672,711 + -0.5
672,711 + -2.3
672,740 + -1.1

Or see this region's nucleotide sequence