Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03055 and DZA65_RS03060 are separated by 12 nucleotides DZA65_RS03060 and DZA65_RS03065 are separated by 478 nucleotides
DZA65_RS03055: DZA65_RS03055 - FAD:protein FMN transferase, at 653,990 to 654,961
_RS03055
DZA65_RS03060: DZA65_RS03060 - TetR/AcrR family transcriptional regulator, at 654,974 to 655,555
_RS03060
DZA65_RS03065: DZA65_RS03065 - SDR family oxidoreductase, at 656,034 to 656,897
_RS03065
Position (kb) 654
655
656 Strain fitness (log2 ratio) -2
-1
0
1
2 at 654.017 kb on + strand at 654.018 kb on - strand at 654.028 kb on - strand at 654.217 kb on + strand, within DZA65_RS03055 at 654.346 kb on - strand, within DZA65_RS03055 at 654.346 kb on - strand, within DZA65_RS03055 at 654.346 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.380 kb on - strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.452 kb on + strand, within DZA65_RS03055 at 654.453 kb on - strand, within DZA65_RS03055 at 654.453 kb on - strand, within DZA65_RS03055 at 654.454 kb on + strand, within DZA65_RS03055 at 654.482 kb on + strand, within DZA65_RS03055 at 654.483 kb on - strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.497 kb on + strand, within DZA65_RS03055 at 654.498 kb on - strand, within DZA65_RS03055 at 654.498 kb on - strand, within DZA65_RS03055 at 654.662 kb on + strand, within DZA65_RS03055 at 654.662 kb on + strand, within DZA65_RS03055 at 654.662 kb on + strand, within DZA65_RS03055 at 654.671 kb on + strand, within DZA65_RS03055 at 654.672 kb on - strand, within DZA65_RS03055 at 654.703 kb on + strand, within DZA65_RS03055 at 654.703 kb on + strand, within DZA65_RS03055 at 654.703 kb on + strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.704 kb on - strand, within DZA65_RS03055 at 654.791 kb on + strand at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.791 kb on + strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.792 kb on - strand, within DZA65_RS03055 at 654.806 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.836 kb on + strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.837 kb on - strand, within DZA65_RS03055 at 654.914 kb on + strand at 654.914 kb on + strand at 654.915 kb on - strand at 654.915 kb on - strand at 654.915 kb on - strand at 654.922 kb on + strand at 654.922 kb on + strand at 654.922 kb on + strand at 654.922 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.975 kb on + strand at 654.976 kb on - strand at 654.976 kb on - strand at 654.976 kb on - strand at 655.160 kb on + strand, within DZA65_RS03060 at 655.160 kb on + strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.161 kb on - strand, within DZA65_RS03060 at 655.173 kb on + strand, within DZA65_RS03060 at 655.173 kb on + strand, within DZA65_RS03060 at 655.174 kb on - strand, within DZA65_RS03060 at 655.174 kb on - strand, within DZA65_RS03060 at 655.184 kb on + strand, within DZA65_RS03060 at 655.185 kb on - strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.211 kb on + strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.212 kb on - strand, within DZA65_RS03060 at 655.278 kb on + strand, within DZA65_RS03060 at 655.278 kb on + strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.279 kb on - strand, within DZA65_RS03060 at 655.309 kb on + strand, within DZA65_RS03060 at 655.310 kb on - strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.410 kb on + strand, within DZA65_RS03060 at 655.507 kb on + strand at 655.507 kb on + strand at 655.507 kb on + strand at 655.545 kb on - strand at 655.545 kb on - strand at 655.545 kb on - strand at 655.571 kb on - strand at 655.606 kb on + strand at 655.619 kb on + strand at 655.620 kb on - strand at 655.651 kb on + strand at 655.684 kb on - strand at 655.741 kb on + strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.742 kb on - strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.743 kb on + strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.744 kb on - strand at 655.889 kb on + strand at 655.893 kb on + strand at 655.894 kb on - strand at 655.894 kb on - strand at 655.964 kb on + strand at 655.965 kb on - strand at 655.992 kb on + strand at 655.992 kb on + strand at 655.992 kb on + strand at 655.993 kb on - strand at 655.993 kb on - strand at 655.993 kb on - strand at 655.993 kb on - strand at 656.020 kb on + strand at 656.020 kb on + strand at 656.020 kb on + strand at 656.021 kb on - strand at 656.021 kb on - strand at 656.039 kb on + strand at 656.092 kb on - strand at 656.092 kb on - strand at 656.092 kb on - strand at 656.148 kb on - strand, within DZA65_RS03065 at 656.148 kb on - strand, within DZA65_RS03065 at 656.187 kb on + strand, within DZA65_RS03065 at 656.187 kb on + strand, within DZA65_RS03065 at 656.222 kb on + strand, within DZA65_RS03065 at 656.223 kb on - strand, within DZA65_RS03065 at 656.223 kb on - strand, within DZA65_RS03065 at 656.309 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.383 kb on + strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.384 kb on - strand, within DZA65_RS03065 at 656.444 kb on + strand, within DZA65_RS03065
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 654,017 + -0.7 654,018 - +0.6 654,028 - +0.5 654,217 + DZA65_RS03055 0.23 +0.8 654,346 - DZA65_RS03055 0.37 -0.1 654,346 - DZA65_RS03055 0.37 -0.1 654,346 - DZA65_RS03055 0.37 -0.7 654,380 - DZA65_RS03055 0.40 -1.1 654,380 - DZA65_RS03055 0.40 +0.9 654,380 - DZA65_RS03055 0.40 -0.1 654,380 - DZA65_RS03055 0.40 -0.4 654,452 + DZA65_RS03055 0.48 +0.9 654,452 + DZA65_RS03055 0.48 -0.6 654,452 + DZA65_RS03055 0.48 -0.2 654,452 + DZA65_RS03055 0.48 +0.3 654,452 + DZA65_RS03055 0.48 -0.3 654,452 + DZA65_RS03055 0.48 +1.5 654,452 + DZA65_RS03055 0.48 -0.7 654,453 - DZA65_RS03055 0.48 -0.3 654,453 - DZA65_RS03055 0.48 +0.3 654,454 + DZA65_RS03055 0.48 +0.3 654,482 + DZA65_RS03055 0.51 +1.1 654,483 - DZA65_RS03055 0.51 +2.2 654,497 + DZA65_RS03055 0.52 -1.2 654,497 + DZA65_RS03055 0.52 +0.6 654,497 + DZA65_RS03055 0.52 -0.1 654,497 + DZA65_RS03055 0.52 -0.3 654,498 - DZA65_RS03055 0.52 +0.4 654,498 - DZA65_RS03055 0.52 -1.5 654,662 + DZA65_RS03055 0.69 -0.9 654,662 + DZA65_RS03055 0.69 +0.2 654,662 + DZA65_RS03055 0.69 +0.7 654,671 + DZA65_RS03055 0.70 +0.2 654,672 - DZA65_RS03055 0.70 -1.1 654,703 + DZA65_RS03055 0.73 -0.5 654,703 + DZA65_RS03055 0.73 -0.6 654,703 + DZA65_RS03055 0.73 -1.9 654,704 - DZA65_RS03055 0.73 -0.5 654,704 - DZA65_RS03055 0.73 +1.8 654,704 - DZA65_RS03055 0.73 +0.1 654,704 - DZA65_RS03055 0.73 -1.1 654,704 - DZA65_RS03055 0.73 +0.7 654,704 - DZA65_RS03055 0.73 -0.1 654,704 - DZA65_RS03055 0.73 -1.0 654,791 + +0.9 654,791 + DZA65_RS03055 0.82 -2.0 654,791 + DZA65_RS03055 0.82 +0.7 654,791 + DZA65_RS03055 0.82 -0.3 654,791 + DZA65_RS03055 0.82 -1.3 654,791 + DZA65_RS03055 0.82 -0.3 654,791 + DZA65_RS03055 0.82 -0.1 654,791 + DZA65_RS03055 0.82 -0.8 654,791 + DZA65_RS03055 0.82 -1.0 654,791 + DZA65_RS03055 0.82 +0.1 654,791 + DZA65_RS03055 0.82 +1.5 654,792 - DZA65_RS03055 0.83 +0.8 654,792 - DZA65_RS03055 0.83 -0.3 654,792 - DZA65_RS03055 0.83 +0.5 654,792 - DZA65_RS03055 0.83 +0.8 654,792 - DZA65_RS03055 0.83 +0.1 654,792 - DZA65_RS03055 0.83 -0.5 654,792 - DZA65_RS03055 0.83 -1.0 654,792 - DZA65_RS03055 0.83 -0.1 654,792 - DZA65_RS03055 0.83 +1.0 654,792 - DZA65_RS03055 0.83 +0.1 654,806 + DZA65_RS03055 0.84 -0.5 654,836 + DZA65_RS03055 0.87 +0.0 654,836 + DZA65_RS03055 0.87 -1.7 654,836 + DZA65_RS03055 0.87 +0.8 654,836 + DZA65_RS03055 0.87 -0.6 654,836 + DZA65_RS03055 0.87 +1.0 654,836 + DZA65_RS03055 0.87 -0.5 654,837 - DZA65_RS03055 0.87 -2.0 654,837 - DZA65_RS03055 0.87 -1.3 654,837 - DZA65_RS03055 0.87 +1.0 654,837 - DZA65_RS03055 0.87 -0.5 654,914 + -0.2 654,914 + -0.5 654,915 - +0.2 654,915 - -1.5 654,915 - -0.5 654,922 + -1.0 654,922 + +1.2 654,922 + -1.6 654,922 + -0.3 654,975 + +0.2 654,975 + -0.5 654,975 + +0.7 654,975 + +0.5 654,975 + -0.4 654,975 + -0.4 654,976 - -0.1 654,976 - +0.1 654,976 - -0.3 655,160 + DZA65_RS03060 0.32 +0.1 655,160 + DZA65_RS03060 0.32 +0.4 655,161 - DZA65_RS03060 0.32 -0.3 655,161 - DZA65_RS03060 0.32 -0.5 655,161 - DZA65_RS03060 0.32 -0.4 655,161 - DZA65_RS03060 0.32 -0.5 655,173 + DZA65_RS03060 0.34 +0.0 655,173 + DZA65_RS03060 0.34 -0.4 655,174 - DZA65_RS03060 0.34 +0.9 655,174 - DZA65_RS03060 0.34 +1.5 655,184 + DZA65_RS03060 0.36 -1.4 655,185 - DZA65_RS03060 0.36 +0.5 655,211 + DZA65_RS03060 0.41 -0.4 655,211 + DZA65_RS03060 0.41 +0.5 655,211 + DZA65_RS03060 0.41 +0.9 655,211 + DZA65_RS03060 0.41 -0.1 655,211 + DZA65_RS03060 0.41 +0.3 655,211 + DZA65_RS03060 0.41 +0.7 655,212 - DZA65_RS03060 0.41 +0.1 655,212 - DZA65_RS03060 0.41 +0.7 655,212 - DZA65_RS03060 0.41 +0.1 655,278 + DZA65_RS03060 0.52 +0.7 655,278 + DZA65_RS03060 0.52 +0.1 655,279 - DZA65_RS03060 0.52 -0.1 655,279 - DZA65_RS03060 0.52 +0.7 655,279 - DZA65_RS03060 0.52 +0.0 655,309 + DZA65_RS03060 0.58 +0.4 655,310 - DZA65_RS03060 0.58 -0.8 655,410 + DZA65_RS03060 0.75 +1.0 655,410 + DZA65_RS03060 0.75 +0.6 655,410 + DZA65_RS03060 0.75 +0.6 655,507 + +0.3 655,507 + -2.5 655,507 + -0.1 655,545 - -0.4 655,545 - -0.2 655,545 - +1.3 655,571 - +1.0 655,606 + +0.5 655,619 + +0.7 655,620 - +0.9 655,651 + -0.7 655,684 - -0.1 655,741 + +1.0 655,742 - +0.7 655,742 - -0.5 655,742 - +0.1 655,742 - -0.5 655,742 - -0.3 655,742 - +0.2 655,743 + +0.3 655,743 + -0.5 655,743 + +0.1 655,743 + +1.5 655,743 + -0.9 655,743 + +0.5 655,743 + +0.3 655,743 + -0.9 655,743 + -0.3 655,743 + +0.7 655,743 + +0.2 655,743 + -0.2 655,743 + +0.5 655,744 - +1.5 655,744 - -1.3 655,744 - -0.5 655,744 - -1.3 655,744 - +0.9 655,744 - -0.7 655,744 - -0.1 655,744 - -0.7 655,744 - -0.4 655,744 - +0.7 655,744 - +0.4 655,744 - +0.1 655,744 - +0.5 655,744 - -0.9 655,744 - -1.1 655,889 + -0.3 655,893 + +0.8 655,894 - -0.2 655,894 - +0.3 655,964 + -0.5 655,965 - -0.7 655,992 + -0.4 655,992 + -0.7 655,992 + +0.6 655,993 - +0.1 655,993 - +2.3 655,993 - -0.2 655,993 - -0.8 656,020 + -0.5 656,020 + -1.1 656,020 + +2.0 656,021 - +0.5 656,021 - +0.1 656,039 + +0.1 656,092 - +0.2 656,092 - -0.5 656,092 - -0.7 656,148 - DZA65_RS03065 0.13 -0.7 656,148 - DZA65_RS03065 0.13 +0.6 656,187 + DZA65_RS03065 0.18 -0.1 656,187 + DZA65_RS03065 0.18 +0.2 656,222 + DZA65_RS03065 0.22 -0.8 656,223 - DZA65_RS03065 0.22 -0.3 656,223 - DZA65_RS03065 0.22 -0.7 656,309 + DZA65_RS03065 0.32 -0.4 656,383 + DZA65_RS03065 0.40 -0.4 656,383 + DZA65_RS03065 0.40 +0.0 656,383 + DZA65_RS03065 0.40 +1.2 656,384 - DZA65_RS03065 0.41 -0.9 656,384 - DZA65_RS03065 0.41 -0.7 656,384 - DZA65_RS03065 0.41 +0.8 656,444 + DZA65_RS03065 0.47 -0.3
Or see this region's nucleotide sequence