Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02990 and DZA65_RS02995 are separated by 330 nucleotides DZA65_RS02995 and DZA65_RS03000 overlap by 2 nucleotides
DZA65_RS02990: DZA65_RS02990 - TerC family protein, at 637,462 to 638,415
_RS02990
DZA65_RS02995: DZA65_RS02995 - hypothetical protein, at 638,746 to 638,937
_RS02995
DZA65_RS03000: DZA65_RS03000 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 638,936 to 640,150
_RS03000
Position (kb) 638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.753 kb on + strand, within DZA65_RS02990 at 637.933 kb on - strand, within DZA65_RS02990 at 637.982 kb on + strand, within DZA65_RS02990 at 637.982 kb on + strand, within DZA65_RS02990 at 637.983 kb on - strand, within DZA65_RS02990 at 637.983 kb on - strand, within DZA65_RS02990 at 637.983 kb on - strand, within DZA65_RS02990 at 638.017 kb on - strand, within DZA65_RS02990 at 638.037 kb on + strand, within DZA65_RS02990 at 638.038 kb on - strand, within DZA65_RS02990 at 638.044 kb on + strand, within DZA65_RS02990 at 638.044 kb on + strand, within DZA65_RS02990 at 638.044 kb on + strand, within DZA65_RS02990 at 638.045 kb on - strand, within DZA65_RS02990 at 638.045 kb on - strand, within DZA65_RS02990 at 638.045 kb on - strand, within DZA65_RS02990 at 638.067 kb on - strand, within DZA65_RS02990 at 638.109 kb on - strand, within DZA65_RS02990 at 638.109 kb on - strand, within DZA65_RS02990 at 638.109 kb on - strand, within DZA65_RS02990 at 638.168 kb on + strand, within DZA65_RS02990 at 638.169 kb on - strand, within DZA65_RS02990 at 638.169 kb on - strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.231 kb on + strand, within DZA65_RS02990 at 638.232 kb on - strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.257 kb on + strand, within DZA65_RS02990 at 638.258 kb on - strand, within DZA65_RS02990 at 638.316 kb on + strand, within DZA65_RS02990 at 638.317 kb on - strand, within DZA65_RS02990 at 638.317 kb on - strand, within DZA65_RS02990 at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.400 kb on + strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.401 kb on - strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.404 kb on + strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.405 kb on - strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.406 kb on + strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.407 kb on - strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.410 kb on + strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.411 kb on - strand at 638.421 kb on + strand at 638.422 kb on - strand at 638.422 kb on - strand at 638.422 kb on - strand at 638.464 kb on + strand at 638.465 kb on - strand at 638.514 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.525 kb on + strand at 638.526 kb on - strand at 638.526 kb on - strand at 638.526 kb on - strand at 638.526 kb on - strand at 638.554 kb on + strand at 638.554 kb on + strand at 638.554 kb on + strand at 638.555 kb on - strand at 638.555 kb on - strand at 638.561 kb on + strand at 638.561 kb on + strand at 638.561 kb on + strand at 638.561 kb on + strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.562 kb on - strand at 638.571 kb on - strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.579 kb on + strand at 638.613 kb on + strand at 638.613 kb on + strand at 638.613 kb on + strand at 638.638 kb on + strand at 638.639 kb on - strand at 638.662 kb on + strand at 638.662 kb on + strand at 638.662 kb on + strand at 638.663 kb on - strand at 638.663 kb on - strand at 638.663 kb on - strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.667 kb on + strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.668 kb on - strand at 638.676 kb on + strand at 638.704 kb on - strand at 638.704 kb on - strand at 638.706 kb on + strand at 638.707 kb on - strand at 638.707 kb on - strand at 638.707 kb on - strand at 638.725 kb on - strand at 638.734 kb on + strand at 638.735 kb on - strand at 638.744 kb on + strand at 638.744 kb on + strand at 638.744 kb on + strand at 638.745 kb on - strand at 638.747 kb on + strand at 638.747 kb on + strand at 638.747 kb on + strand at 638.748 kb on - strand at 638.748 kb on - strand at 638.748 kb on - strand at 638.755 kb on + strand at 638.755 kb on + strand at 638.756 kb on - strand at 638.756 kb on - strand at 638.756 kb on - strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.765 kb on - strand at 638.766 kb on + strand, within DZA65_RS02995 at 638.766 kb on + strand, within DZA65_RS02995 at 638.766 kb on + strand, within DZA65_RS02995 at 638.772 kb on + strand, within DZA65_RS02995 at 638.808 kb on + strand, within DZA65_RS02995 at 638.809 kb on - strand, within DZA65_RS02995 at 638.831 kb on + strand, within DZA65_RS02995 at 638.831 kb on + strand, within DZA65_RS02995 at 638.832 kb on - strand, within DZA65_RS02995 at 638.832 kb on - strand, within DZA65_RS02995 at 638.878 kb on + strand, within DZA65_RS02995 at 638.879 kb on - strand, within DZA65_RS02995 at 639.035 kb on + strand at 639.035 kb on + strand at 639.035 kb on + strand at 639.035 kb on + strand at 639.036 kb on - strand at 639.036 kb on - strand at 639.036 kb on - strand at 639.036 kb on - strand at 639.123 kb on + strand, within DZA65_RS03000 at 639.158 kb on + strand, within DZA65_RS03000 at 639.158 kb on + strand, within DZA65_RS03000 at 639.159 kb on - strand, within DZA65_RS03000 at 639.185 kb on - strand, within DZA65_RS03000 at 639.204 kb on - strand, within DZA65_RS03000 at 639.377 kb on - strand, within DZA65_RS03000 at 639.377 kb on - strand, within DZA65_RS03000 at 639.427 kb on + strand, within DZA65_RS03000 at 639.427 kb on + strand, within DZA65_RS03000 at 639.611 kb on + strand, within DZA65_RS03000 at 639.611 kb on + strand, within DZA65_RS03000 at 639.612 kb on - strand, within DZA65_RS03000 at 639.616 kb on + strand, within DZA65_RS03000 at 639.616 kb on + strand, within DZA65_RS03000 at 639.616 kb on + strand, within DZA65_RS03000 at 639.617 kb on - strand, within DZA65_RS03000 at 639.617 kb on - strand, within DZA65_RS03000 at 639.626 kb on + strand at 639.626 kb on + strand, within DZA65_RS03000 at 639.678 kb on + strand, within DZA65_RS03000 at 639.678 kb on + strand, within DZA65_RS03000 at 639.678 kb on + strand, within DZA65_RS03000 at 639.679 kb on - strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.776 kb on + strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.777 kb on - strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.800 kb on + strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.801 kb on - strand, within DZA65_RS03000 at 639.854 kb on - strand, within DZA65_RS03000 at 639.854 kb on - strand, within DZA65_RS03000 at 639.928 kb on + strand, within DZA65_RS03000 at 639.929 kb on - strand, within DZA65_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 637,753 + DZA65_RS02990 0.31 +0.9 637,933 - DZA65_RS02990 0.49 -0.8 637,982 + DZA65_RS02990 0.55 -2.3 637,982 + DZA65_RS02990 0.55 -0.4 637,983 - DZA65_RS02990 0.55 +0.5 637,983 - DZA65_RS02990 0.55 -1.0 637,983 - DZA65_RS02990 0.55 -0.4 638,017 - DZA65_RS02990 0.58 -0.3 638,037 + DZA65_RS02990 0.60 -0.2 638,038 - DZA65_RS02990 0.60 -1.1 638,044 + DZA65_RS02990 0.61 -0.7 638,044 + DZA65_RS02990 0.61 -0.0 638,044 + DZA65_RS02990 0.61 +0.6 638,045 - DZA65_RS02990 0.61 +0.5 638,045 - DZA65_RS02990 0.61 -0.9 638,045 - DZA65_RS02990 0.61 -0.1 638,067 - DZA65_RS02990 0.63 -0.4 638,109 - DZA65_RS02990 0.68 -0.2 638,109 - DZA65_RS02990 0.68 -0.0 638,109 - DZA65_RS02990 0.68 +0.0 638,168 + DZA65_RS02990 0.74 -0.1 638,169 - DZA65_RS02990 0.74 -0.2 638,169 - DZA65_RS02990 0.74 -1.9 638,231 + DZA65_RS02990 0.81 +0.1 638,231 + DZA65_RS02990 0.81 +0.7 638,231 + DZA65_RS02990 0.81 +0.5 638,231 + DZA65_RS02990 0.81 +0.5 638,232 - DZA65_RS02990 0.81 -1.0 638,257 + DZA65_RS02990 0.83 -0.2 638,257 + DZA65_RS02990 0.83 -1.4 638,257 + DZA65_RS02990 0.83 -1.4 638,257 + DZA65_RS02990 0.83 -0.9 638,257 + DZA65_RS02990 0.83 +1.0 638,258 - DZA65_RS02990 0.83 -0.5 638,316 + DZA65_RS02990 0.90 +0.6 638,317 - DZA65_RS02990 0.90 -0.5 638,317 - DZA65_RS02990 0.90 +0.9 638,400 + +0.2 638,400 + -0.3 638,400 + -0.5 638,400 + -0.3 638,400 + +0.7 638,400 + -1.5 638,401 - +0.9 638,401 - -0.0 638,401 - -0.0 638,401 - -2.7 638,401 - -0.5 638,401 - -0.9 638,401 - -0.1 638,401 - +0.4 638,404 + -0.3 638,404 + -1.1 638,404 + +1.5 638,404 + +0.2 638,404 + +0.0 638,404 + -1.5 638,404 + -0.5 638,404 + -1.2 638,404 + -0.2 638,404 + +0.5 638,404 + +0.2 638,404 + -1.6 638,404 + +0.3 638,404 + +0.8 638,404 + +0.3 638,404 + -0.7 638,404 + +0.0 638,405 - +0.6 638,405 - +1.7 638,405 - -0.1 638,405 - +1.2 638,405 - +0.7 638,405 - +0.2 638,405 - -0.1 638,405 - +0.9 638,405 - -0.1 638,405 - -1.0 638,405 - -0.4 638,405 - -0.4 638,405 - +0.3 638,405 - +0.1 638,405 - +0.5 638,405 - -0.6 638,406 + -0.5 638,406 + -0.3 638,406 + -2.4 638,406 + -0.3 638,406 + +0.2 638,406 + -1.3 638,406 + -1.4 638,406 + -0.2 638,407 - +0.1 638,407 - +0.3 638,407 - -0.9 638,407 - +0.7 638,407 - -0.5 638,407 - -0.0 638,407 - -0.9 638,407 - -1.2 638,407 - +0.5 638,407 - +0.1 638,407 - -0.6 638,410 + +1.5 638,410 + +0.9 638,410 + -0.2 638,410 + -1.3 638,410 + -1.0 638,410 + -0.1 638,411 - -0.1 638,411 - +0.1 638,411 - +0.9 638,411 - -0.3 638,411 - +0.7 638,421 + +1.0 638,422 - +0.4 638,422 - -0.2 638,422 - -0.5 638,464 + +0.0 638,465 - -0.3 638,514 + -1.1 638,525 + +0.3 638,525 + -0.0 638,525 + +1.1 638,525 + -0.1 638,525 + -0.2 638,526 - -0.7 638,526 - -0.8 638,526 - +0.3 638,526 - +0.5 638,554 + +0.3 638,554 + -0.1 638,554 + -0.7 638,555 - -1.0 638,555 - -0.2 638,561 + -1.4 638,561 + +0.0 638,561 + -0.8 638,561 + -0.2 638,562 - -0.9 638,562 - +0.5 638,562 - +0.0 638,562 - -0.4 638,562 - -0.7 638,562 - -2.2 638,562 - -1.6 638,562 - -1.5 638,571 - -0.2 638,579 + -0.1 638,579 + -0.3 638,579 + +0.7 638,579 + +0.6 638,579 + -0.4 638,579 + -1.7 638,579 + -0.5 638,613 + +0.5 638,613 + -0.7 638,613 + -0.4 638,638 + -0.2 638,639 - +0.8 638,662 + +0.9 638,662 + +2.0 638,662 + +0.6 638,663 - -0.0 638,663 - +1.2 638,663 - +0.4 638,667 + +0.7 638,667 + -1.7 638,667 + -0.3 638,667 + -3.3 638,667 + -0.5 638,667 + -0.5 638,668 - +0.5 638,668 - +2.0 638,668 - -0.4 638,668 - -0.1 638,668 - -0.4 638,676 + -0.9 638,704 - +0.6 638,704 - +0.4 638,706 + -0.5 638,707 - +1.7 638,707 - -0.1 638,707 - +0.7 638,725 - +0.0 638,734 + +0.5 638,735 - +0.8 638,744 + -0.9 638,744 + +0.4 638,744 + +0.1 638,745 - +0.2 638,747 + +0.5 638,747 + -0.3 638,747 + -0.5 638,748 - -0.7 638,748 - -0.7 638,748 - +0.1 638,755 + -1.0 638,755 + +0.2 638,756 - -1.2 638,756 - +1.5 638,756 - -0.9 638,758 + -1.0 638,758 + -0.0 638,758 + -0.3 638,758 + -1.2 638,765 - +0.9 638,766 + DZA65_RS02995 0.10 +0.2 638,766 + DZA65_RS02995 0.10 -0.9 638,766 + DZA65_RS02995 0.10 +0.2 638,772 + DZA65_RS02995 0.14 -1.8 638,808 + DZA65_RS02995 0.32 -0.4 638,809 - DZA65_RS02995 0.33 -0.9 638,831 + DZA65_RS02995 0.44 -0.9 638,831 + DZA65_RS02995 0.44 -0.3 638,832 - DZA65_RS02995 0.45 +0.0 638,832 - DZA65_RS02995 0.45 -0.5 638,878 + DZA65_RS02995 0.69 +0.2 638,879 - DZA65_RS02995 0.69 -0.7 639,035 + -1.3 639,035 + +0.7 639,035 + +0.1 639,035 + -1.0 639,036 - +0.3 639,036 - -0.4 639,036 - +0.9 639,036 - +0.5 639,123 + DZA65_RS03000 0.15 -0.3 639,158 + DZA65_RS03000 0.18 -0.5 639,158 + DZA65_RS03000 0.18 -0.2 639,159 - DZA65_RS03000 0.18 -0.0 639,185 - DZA65_RS03000 0.20 -0.3 639,204 - DZA65_RS03000 0.22 +0.5 639,377 - DZA65_RS03000 0.36 +0.2 639,377 - DZA65_RS03000 0.36 -0.1 639,427 + DZA65_RS03000 0.40 -0.7 639,427 + DZA65_RS03000 0.40 -0.7 639,611 + DZA65_RS03000 0.56 -0.9 639,611 + DZA65_RS03000 0.56 +0.9 639,612 - DZA65_RS03000 0.56 +0.6 639,616 + DZA65_RS03000 0.56 +0.5 639,616 + DZA65_RS03000 0.56 -0.1 639,616 + DZA65_RS03000 0.56 +0.5 639,617 - DZA65_RS03000 0.56 -0.6 639,617 - DZA65_RS03000 0.56 +0.5 639,626 + -0.1 639,626 + DZA65_RS03000 0.57 +0.2 639,678 + DZA65_RS03000 0.61 -0.3 639,678 + DZA65_RS03000 0.61 +0.5 639,678 + DZA65_RS03000 0.61 -0.9 639,679 - DZA65_RS03000 0.61 -1.3 639,776 + DZA65_RS03000 0.69 -0.1 639,776 + DZA65_RS03000 0.69 +0.7 639,776 + DZA65_RS03000 0.69 -0.5 639,776 + DZA65_RS03000 0.69 -0.5 639,776 + DZA65_RS03000 0.69 +0.8 639,776 + DZA65_RS03000 0.69 +0.5 639,776 + DZA65_RS03000 0.69 -0.4 639,776 + DZA65_RS03000 0.69 -1.1 639,777 - DZA65_RS03000 0.69 +0.0 639,777 - DZA65_RS03000 0.69 -0.5 639,777 - DZA65_RS03000 0.69 -0.1 639,777 - DZA65_RS03000 0.69 -0.5 639,777 - DZA65_RS03000 0.69 -1.7 639,777 - DZA65_RS03000 0.69 +0.9 639,777 - DZA65_RS03000 0.69 -0.5 639,777 - DZA65_RS03000 0.69 +0.2 639,777 - DZA65_RS03000 0.69 -1.3 639,800 + DZA65_RS03000 0.71 -0.9 639,800 + DZA65_RS03000 0.71 -0.7 639,800 + DZA65_RS03000 0.71 -0.5 639,800 + DZA65_RS03000 0.71 -0.7 639,800 + DZA65_RS03000 0.71 +0.4 639,800 + DZA65_RS03000 0.71 -2.9 639,800 + DZA65_RS03000 0.71 -1.1 639,800 + DZA65_RS03000 0.71 -2.8 639,800 + DZA65_RS03000 0.71 -0.5 639,800 + DZA65_RS03000 0.71 -1.9 639,800 + DZA65_RS03000 0.71 -0.4 639,800 + DZA65_RS03000 0.71 +0.2 639,800 + DZA65_RS03000 0.71 +0.0 639,801 - DZA65_RS03000 0.71 -0.3 639,801 - DZA65_RS03000 0.71 -0.9 639,801 - DZA65_RS03000 0.71 -0.2 639,801 - DZA65_RS03000 0.71 -0.8 639,801 - DZA65_RS03000 0.71 +0.3 639,801 - DZA65_RS03000 0.71 -0.3 639,801 - DZA65_RS03000 0.71 +0.8 639,801 - DZA65_RS03000 0.71 -0.9 639,801 - DZA65_RS03000 0.71 -0.5 639,801 - DZA65_RS03000 0.71 +1.2 639,801 - DZA65_RS03000 0.71 -0.3 639,801 - DZA65_RS03000 0.71 +0.2 639,854 - DZA65_RS03000 0.76 +0.1 639,854 - DZA65_RS03000 0.76 -0.9 639,928 + DZA65_RS03000 0.82 +1.5 639,929 - DZA65_RS03000 0.82 -0.9
Or see this region's nucleotide sequence