Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02670 and DZA65_RS02675 are separated by 302 nucleotides DZA65_RS02675 and DZA65_RS02680 are separated by 140 nucleotides
DZA65_RS02670: DZA65_RS02670 - hypothetical protein, at 572,633 to 573,520
_RS02670
DZA65_RS02675: DZA65_RS02675 - Gfo/Idh/MocA family oxidoreductase, at 573,823 to 574,974
_RS02675
DZA65_RS02680: DZA65_RS02680 - heavy metal translocating P-type ATPase, at 575,115 to 577,451
_RS02680
Position (kb) 573
574
575 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.852 kb on + strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.853 kb on - strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.962 kb on + strand, within DZA65_RS02670 at 572.963 kb on - strand, within DZA65_RS02670 at 572.963 kb on - strand, within DZA65_RS02670 at 573.008 kb on + strand, within DZA65_RS02670 at 573.041 kb on + strand, within DZA65_RS02670 at 573.041 kb on + strand, within DZA65_RS02670 at 573.042 kb on - strand, within DZA65_RS02670 at 573.196 kb on + strand, within DZA65_RS02670 at 573.197 kb on - strand, within DZA65_RS02670 at 573.234 kb on + strand, within DZA65_RS02670 at 573.257 kb on + strand, within DZA65_RS02670 at 573.258 kb on - strand at 573.269 kb on + strand, within DZA65_RS02670 at 573.269 kb on + strand, within DZA65_RS02670 at 573.269 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.313 kb on + strand, within DZA65_RS02670 at 573.314 kb on - strand, within DZA65_RS02670 at 573.351 kb on - strand, within DZA65_RS02670 at 573.351 kb on - strand, within DZA65_RS02670 at 573.369 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.406 kb on - strand, within DZA65_RS02670 at 573.496 kb on + strand at 573.497 kb on - strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.507 kb on + strand at 573.508 kb on - strand at 573.508 kb on - strand at 573.508 kb on - strand at 573.512 kb on + strand at 573.512 kb on + strand at 573.512 kb on + strand at 573.512 kb on + strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.513 kb on - strand at 573.556 kb on - strand at 573.556 kb on - strand at 573.568 kb on + strand at 573.569 kb on - strand at 573.618 kb on + strand at 573.620 kb on + strand at 573.738 kb on + strand at 573.739 kb on - strand at 573.776 kb on - strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.820 kb on + strand at 573.821 kb on - strand at 573.821 kb on - strand at 573.821 kb on - strand at 573.821 kb on - strand at 573.821 kb on - strand at 574.047 kb on + strand, within DZA65_RS02675 at 574.047 kb on + strand, within DZA65_RS02675 at 574.048 kb on - strand, within DZA65_RS02675 at 574.048 kb on - strand, within DZA65_RS02675 at 574.048 kb on - strand at 574.048 kb on - strand, within DZA65_RS02675 at 574.076 kb on + strand, within DZA65_RS02675 at 574.077 kb on - strand, within DZA65_RS02675 at 574.088 kb on - strand, within DZA65_RS02675 at 574.088 kb on - strand, within DZA65_RS02675 at 574.088 kb on - strand at 574.089 kb on + strand, within DZA65_RS02675 at 574.090 kb on - strand, within DZA65_RS02675 at 574.090 kb on - strand, within DZA65_RS02675 at 574.090 kb on - strand, within DZA65_RS02675 at 574.098 kb on + strand, within DZA65_RS02675 at 574.194 kb on - strand, within DZA65_RS02675 at 574.202 kb on - strand, within DZA65_RS02675 at 574.214 kb on - strand, within DZA65_RS02675 at 574.214 kb on - strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.260 kb on + strand, within DZA65_RS02675 at 574.261 kb on - strand, within DZA65_RS02675 at 574.261 kb on - strand, within DZA65_RS02675 at 574.284 kb on + strand, within DZA65_RS02675 at 574.285 kb on - strand, within DZA65_RS02675 at 574.295 kb on - strand, within DZA65_RS02675 at 574.295 kb on - strand, within DZA65_RS02675 at 574.311 kb on + strand, within DZA65_RS02675 at 574.312 kb on - strand, within DZA65_RS02675 at 574.331 kb on - strand, within DZA65_RS02675 at 574.339 kb on + strand, within DZA65_RS02675 at 574.339 kb on + strand, within DZA65_RS02675 at 574.340 kb on - strand, within DZA65_RS02675 at 574.340 kb on - strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.351 kb on + strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.352 kb on - strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.353 kb on + strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.354 kb on - strand, within DZA65_RS02675 at 574.388 kb on - strand, within DZA65_RS02675 at 574.388 kb on - strand, within DZA65_RS02675 at 574.498 kb on + strand, within DZA65_RS02675 at 574.498 kb on + strand, within DZA65_RS02675 at 574.506 kb on + strand, within DZA65_RS02675 at 574.506 kb on + strand, within DZA65_RS02675 at 574.507 kb on - strand, within DZA65_RS02675 at 574.507 kb on - strand, within DZA65_RS02675 at 574.588 kb on + strand at 574.588 kb on + strand, within DZA65_RS02675 at 574.588 kb on + strand, within DZA65_RS02675 at 574.588 kb on + strand, within DZA65_RS02675 at 574.589 kb on - strand, within DZA65_RS02675 at 574.589 kb on - strand, within DZA65_RS02675 at 574.753 kb on + strand, within DZA65_RS02675 at 574.753 kb on + strand, within DZA65_RS02675 at 574.754 kb on - strand, within DZA65_RS02675 at 574.761 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.768 kb on + strand, within DZA65_RS02675 at 574.791 kb on + strand, within DZA65_RS02675 at 574.791 kb on + strand, within DZA65_RS02675 at 574.994 kb on + strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 574.995 kb on - strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.001 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.116 kb on + strand at 575.117 kb on - strand at 575.117 kb on - strand at 575.148 kb on + strand at 575.149 kb on - strand at 575.200 kb on - strand at 575.200 kb on - strand at 575.312 kb on + strand at 575.313 kb on - strand at 575.313 kb on - strand at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.502 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.547 kb on + strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.548 kb on - strand, within DZA65_RS02680 at 575.562 kb on - strand, within DZA65_RS02680 at 575.575 kb on + strand, within DZA65_RS02680 at 575.576 kb on - strand, within DZA65_RS02680 at 575.576 kb on - strand, within DZA65_RS02680 at 575.607 kb on + strand, within DZA65_RS02680 at 575.633 kb on + strand, within DZA65_RS02680 at 575.812 kb on + strand at 575.813 kb on - strand, within DZA65_RS02680 at 575.813 kb on - strand, within DZA65_RS02680
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 572,852 + DZA65_RS02670 0.25 -0.7 572,852 + DZA65_RS02670 0.25 +0.7 572,852 + DZA65_RS02670 0.25 -0.6 572,852 + DZA65_RS02670 0.25 -1.4 572,852 + DZA65_RS02670 0.25 -2.3 572,852 + DZA65_RS02670 0.25 -1.3 572,852 + DZA65_RS02670 0.25 -0.3 572,852 + DZA65_RS02670 0.25 +0.8 572,852 + DZA65_RS02670 0.25 -0.6 572,853 - DZA65_RS02670 0.25 +0.5 572,853 - DZA65_RS02670 0.25 -0.2 572,853 - DZA65_RS02670 0.25 +0.7 572,853 - DZA65_RS02670 0.25 -1.1 572,853 - DZA65_RS02670 0.25 -1.0 572,853 - DZA65_RS02670 0.25 -0.6 572,853 - DZA65_RS02670 0.25 -0.0 572,853 - DZA65_RS02670 0.25 -0.8 572,962 + DZA65_RS02670 0.37 +0.2 572,962 + DZA65_RS02670 0.37 -0.8 572,962 + DZA65_RS02670 0.37 -0.7 572,962 + DZA65_RS02670 0.37 -0.5 572,963 - DZA65_RS02670 0.37 -0.8 572,963 - DZA65_RS02670 0.37 +0.7 573,008 + DZA65_RS02670 0.42 -0.6 573,041 + DZA65_RS02670 0.46 -0.4 573,041 + DZA65_RS02670 0.46 -1.8 573,042 - DZA65_RS02670 0.46 +0.0 573,196 + DZA65_RS02670 0.63 +1.1 573,197 - DZA65_RS02670 0.64 -0.3 573,234 + DZA65_RS02670 0.68 -0.0 573,257 + DZA65_RS02670 0.70 -0.5 573,258 - +1.5 573,269 + DZA65_RS02670 0.72 +0.4 573,269 + DZA65_RS02670 0.72 +0.9 573,269 + DZA65_RS02670 0.72 -1.5 573,313 + DZA65_RS02670 0.77 -0.6 573,313 + DZA65_RS02670 0.77 +0.5 573,313 + DZA65_RS02670 0.77 +0.6 573,313 + DZA65_RS02670 0.77 +0.1 573,314 - DZA65_RS02670 0.77 -1.1 573,351 - DZA65_RS02670 0.81 +1.2 573,351 - DZA65_RS02670 0.81 -0.5 573,369 - DZA65_RS02670 0.83 -0.8 573,406 - DZA65_RS02670 0.87 -0.5 573,406 - DZA65_RS02670 0.87 -1.7 573,406 - DZA65_RS02670 0.87 +0.1 573,406 - DZA65_RS02670 0.87 -0.1 573,496 + -0.6 573,497 - -0.6 573,507 + +1.2 573,507 + -0.8 573,507 + -0.5 573,507 + -0.5 573,507 + +0.6 573,508 - +0.3 573,508 - -1.5 573,508 - -0.9 573,512 + -1.2 573,512 + +0.9 573,512 + +0.5 573,512 + +0.7 573,513 - +0.3 573,513 - -0.3 573,513 - +0.4 573,513 - +1.3 573,513 - +1.3 573,513 - -1.7 573,513 - +0.4 573,556 - +0.2 573,556 - -1.5 573,568 + +1.1 573,569 - -0.9 573,618 + +0.7 573,620 + -0.4 573,738 + +0.1 573,739 - +0.6 573,776 - -0.3 573,820 + -0.3 573,820 + -1.5 573,820 + +0.3 573,820 + +0.3 573,820 + -0.0 573,820 + -0.8 573,820 + -2.2 573,821 - +0.5 573,821 - +1.3 573,821 - +1.4 573,821 - -0.3 573,821 - +1.7 574,047 + DZA65_RS02675 0.19 +0.6 574,047 + DZA65_RS02675 0.19 -0.3 574,048 - DZA65_RS02675 0.20 -0.6 574,048 - DZA65_RS02675 0.20 -1.7 574,048 - +1.9 574,048 - DZA65_RS02675 0.20 +0.1 574,076 + DZA65_RS02675 0.22 +0.6 574,077 - DZA65_RS02675 0.22 -0.9 574,088 - DZA65_RS02675 0.23 -0.3 574,088 - DZA65_RS02675 0.23 +0.0 574,088 - +1.5 574,089 + DZA65_RS02675 0.23 -1.0 574,090 - DZA65_RS02675 0.23 +0.9 574,090 - DZA65_RS02675 0.23 +0.8 574,090 - DZA65_RS02675 0.23 -0.4 574,098 + DZA65_RS02675 0.24 -0.3 574,194 - DZA65_RS02675 0.32 -0.5 574,202 - DZA65_RS02675 0.33 -0.0 574,214 - DZA65_RS02675 0.34 -1.3 574,214 - DZA65_RS02675 0.34 -0.3 574,260 + DZA65_RS02675 0.38 -0.7 574,260 + DZA65_RS02675 0.38 -1.2 574,260 + DZA65_RS02675 0.38 -0.1 574,261 - DZA65_RS02675 0.38 -2.2 574,261 - DZA65_RS02675 0.38 -1.3 574,284 + DZA65_RS02675 0.40 -0.2 574,285 - DZA65_RS02675 0.40 +0.1 574,295 - DZA65_RS02675 0.41 +0.5 574,295 - DZA65_RS02675 0.41 -1.1 574,311 + DZA65_RS02675 0.42 -0.1 574,312 - DZA65_RS02675 0.42 -0.3 574,331 - DZA65_RS02675 0.44 -0.0 574,339 + DZA65_RS02675 0.45 -0.7 574,339 + DZA65_RS02675 0.45 +0.1 574,340 - DZA65_RS02675 0.45 +0.1 574,340 - DZA65_RS02675 0.45 -1.3 574,351 + DZA65_RS02675 0.46 +0.2 574,351 + DZA65_RS02675 0.46 +1.5 574,351 + DZA65_RS02675 0.46 -2.6 574,351 + DZA65_RS02675 0.46 +0.3 574,351 + DZA65_RS02675 0.46 -0.8 574,351 + DZA65_RS02675 0.46 -0.7 574,351 + DZA65_RS02675 0.46 -1.7 574,351 + DZA65_RS02675 0.46 -0.4 574,351 + DZA65_RS02675 0.46 +0.5 574,351 + DZA65_RS02675 0.46 +0.3 574,352 - DZA65_RS02675 0.46 +0.0 574,352 - DZA65_RS02675 0.46 +0.5 574,352 - DZA65_RS02675 0.46 -0.7 574,352 - DZA65_RS02675 0.46 -0.8 574,352 - DZA65_RS02675 0.46 -0.5 574,353 + DZA65_RS02675 0.46 +1.2 574,353 + DZA65_RS02675 0.46 +0.2 574,353 + DZA65_RS02675 0.46 -1.1 574,353 + DZA65_RS02675 0.46 +0.5 574,353 + DZA65_RS02675 0.46 -0.2 574,353 + DZA65_RS02675 0.46 -0.1 574,353 + DZA65_RS02675 0.46 -0.1 574,353 + DZA65_RS02675 0.46 -0.3 574,354 - DZA65_RS02675 0.46 -0.5 574,354 - DZA65_RS02675 0.46 +0.3 574,354 - DZA65_RS02675 0.46 +0.5 574,354 - DZA65_RS02675 0.46 +1.2 574,354 - DZA65_RS02675 0.46 -0.5 574,354 - DZA65_RS02675 0.46 +1.0 574,354 - -0.5 574,354 - DZA65_RS02675 0.46 +1.1 574,354 - DZA65_RS02675 0.46 +1.0 574,354 - DZA65_RS02675 0.46 -1.8 574,354 - DZA65_RS02675 0.46 +1.7 574,388 - DZA65_RS02675 0.49 -2.7 574,388 - DZA65_RS02675 0.49 -0.1 574,498 + DZA65_RS02675 0.59 -0.3 574,498 + DZA65_RS02675 0.59 +2.1 574,506 + DZA65_RS02675 0.59 +0.4 574,506 + DZA65_RS02675 0.59 +0.1 574,507 - DZA65_RS02675 0.59 +0.3 574,507 - DZA65_RS02675 0.59 +0.5 574,588 + -1.1 574,588 + DZA65_RS02675 0.66 -1.2 574,588 + DZA65_RS02675 0.66 -1.5 574,588 + DZA65_RS02675 0.66 +0.2 574,589 - DZA65_RS02675 0.66 +1.1 574,589 - DZA65_RS02675 0.66 -1.2 574,753 + DZA65_RS02675 0.81 -0.3 574,753 + DZA65_RS02675 0.81 -0.3 574,754 - DZA65_RS02675 0.81 +0.5 574,761 + DZA65_RS02675 0.81 -0.6 574,768 + DZA65_RS02675 0.82 -1.7 574,768 + DZA65_RS02675 0.82 -0.7 574,768 + DZA65_RS02675 0.82 +0.6 574,768 + DZA65_RS02675 0.82 +0.1 574,768 + DZA65_RS02675 0.82 +1.0 574,768 + DZA65_RS02675 0.82 +0.1 574,791 + DZA65_RS02675 0.84 -0.4 574,791 + DZA65_RS02675 0.84 +0.5 574,994 + +0.5 574,995 - +0.3 574,995 - -3.3 574,995 - +1.3 574,995 - -0.1 574,995 - -0.2 575,001 + +0.2 575,001 + +0.5 575,001 + +1.6 575,001 + +0.3 575,001 + +0.3 575,116 + -0.3 575,116 + +0.3 575,116 + -1.0 575,116 + +1.5 575,116 + -0.5 575,116 + -0.5 575,117 - +0.5 575,117 - -0.4 575,148 + +1.0 575,149 - -1.1 575,200 - -0.8 575,200 - -0.8 575,312 + +0.7 575,313 - -0.5 575,313 - -1.3 575,502 + DZA65_RS02680 0.17 -1.3 575,502 + DZA65_RS02680 0.17 -1.1 575,502 + DZA65_RS02680 0.17 -0.1 575,502 + DZA65_RS02680 0.17 -0.4 575,547 + DZA65_RS02680 0.18 -1.8 575,547 + DZA65_RS02680 0.18 -0.8 575,547 + DZA65_RS02680 0.18 -0.5 575,547 + DZA65_RS02680 0.18 -0.3 575,547 + DZA65_RS02680 0.18 +0.3 575,547 + DZA65_RS02680 0.18 -0.8 575,547 + DZA65_RS02680 0.18 -1.8 575,548 - DZA65_RS02680 0.19 +0.1 575,548 - DZA65_RS02680 0.19 +0.9 575,548 - DZA65_RS02680 0.19 -1.5 575,548 - DZA65_RS02680 0.19 -0.0 575,548 - DZA65_RS02680 0.19 -0.7 575,548 - DZA65_RS02680 0.19 -2.5 575,548 - DZA65_RS02680 0.19 -0.6 575,562 - DZA65_RS02680 0.19 -0.3 575,575 + DZA65_RS02680 0.20 -1.7 575,576 - DZA65_RS02680 0.20 +0.2 575,576 - DZA65_RS02680 0.20 +1.1 575,607 + DZA65_RS02680 0.21 -1.1 575,633 + DZA65_RS02680 0.22 -0.5 575,812 + +0.9 575,813 - DZA65_RS02680 0.30 -0.8 575,813 - DZA65_RS02680 0.30 +0.9
Or see this region's nucleotide sequence