Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02575 and DZA65_RS02580 are separated by 268 nucleotides DZA65_RS02580 and DZA65_RS02585 overlap by 16 nucleotides DZA65_RS02585 and DZA65_RS02590 overlap by 4 nucleotides DZA65_RS02590 and DZA65_RS02595 are separated by 230 nucleotides
DZA65_RS02575: DZA65_RS02575 - DUF1868 domain-containing protein, at 553,794 to 554,624
_RS02575
DZA65_RS02580: DZA65_RS02580 - acetyltransferase, at 554,893 to 555,573
_RS02580
DZA65_RS02585: DZA65_RS02585 - hydroxyisourate hydrolase, at 555,558 to 555,890
_RS02585
DZA65_RS02590: DZA65_RS02590 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 555,887 to 556,387
_RS02590
DZA65_RS02595: DZA65_RS02595 - LysR family transcriptional regulator, at 556,618 to 557,556
_RS02595
Position (kb) 555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.570 kb on + strand at 554.571 kb on - strand at 554.571 kb on - strand at 554.575 kb on + strand at 554.576 kb on - strand at 554.601 kb on + strand at 554.601 kb on + strand at 554.602 kb on - strand at 554.602 kb on - strand at 554.602 kb on - strand at 554.642 kb on + strand at 554.642 kb on + strand at 554.642 kb on + strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.643 kb on - strand at 554.649 kb on + strand at 554.650 kb on - strand at 554.650 kb on - strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.652 kb on + strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.653 kb on - strand at 554.660 kb on + strand at 554.661 kb on - strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.669 kb on + strand at 554.670 kb on - strand at 554.670 kb on - strand at 554.670 kb on - strand at 554.670 kb on - strand at 554.676 kb on + strand at 554.677 kb on - strand at 554.677 kb on - strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.680 kb on + strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.681 kb on - strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.688 kb on + strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.689 kb on - strand at 554.695 kb on + strand at 554.696 kb on - strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.699 kb on + strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.700 kb on - strand at 554.707 kb on + strand at 554.707 kb on + strand at 554.707 kb on + strand at 554.707 kb on + strand at 554.708 kb on - strand at 554.708 kb on - strand at 554.708 kb on - strand at 554.708 kb on - strand at 554.714 kb on + strand at 554.714 kb on + strand at 554.714 kb on + strand at 554.715 kb on - strand at 554.715 kb on - strand at 554.718 kb on + strand at 554.719 kb on - strand at 554.719 kb on - strand at 554.731 kb on + strand at 554.731 kb on + strand at 554.782 kb on + strand at 554.782 kb on + strand at 554.782 kb on + strand at 554.782 kb on + strand at 554.783 kb on - strand at 554.793 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.848 kb on + strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.849 kb on - strand at 554.951 kb on + strand at 554.951 kb on + strand at 554.951 kb on + strand at 554.951 kb on + strand at 554.952 kb on - strand at 554.952 kb on - strand at 554.952 kb on - strand at 555.000 kb on + strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.001 kb on - strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.031 kb on + strand, within DZA65_RS02580 at 555.032 kb on - strand, within DZA65_RS02580 at 555.032 kb on - strand, within DZA65_RS02580 at 555.032 kb on - strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.037 kb on + strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.038 kb on - strand, within DZA65_RS02580 at 555.160 kb on + strand, within DZA65_RS02580 at 555.161 kb on - strand, within DZA65_RS02580 at 555.176 kb on - strand, within DZA65_RS02580 at 555.520 kb on + strand at 555.520 kb on + strand at 555.520 kb on + strand at 555.520 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.575 kb on + strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.576 kb on - strand at 555.614 kb on - strand, within DZA65_RS02585 at 555.614 kb on - strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.654 kb on + strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.655 kb on - strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.658 kb on + strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.659 kb on - strand, within DZA65_RS02585 at 555.715 kb on + strand, within DZA65_RS02585 at 555.878 kb on + strand at 555.878 kb on + strand at 555.884 kb on + strand at 555.884 kb on + strand at 555.885 kb on - strand at 556.103 kb on - strand, within DZA65_RS02590 at 556.366 kb on + strand at 556.366 kb on + strand at 556.367 kb on - strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.376 kb on + strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.377 kb on - strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.408 kb on + strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.409 kb on - strand at 556.419 kb on + strand at 556.419 kb on + strand at 556.419 kb on + strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.420 kb on - strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.480 kb on - strand at 556.491 kb on + strand at 556.491 kb on + strand at 556.491 kb on + strand at 556.492 kb on - strand at 556.492 kb on - strand at 556.492 kb on - strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.534 kb on + strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.535 kb on - strand at 556.571 kb on + strand at 556.571 kb on + strand at 556.571 kb on + strand at 556.572 kb on - strand at 556.572 kb on - strand at 556.582 kb on + strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.583 kb on - strand at 556.599 kb on + strand at 556.689 kb on + strand at 556.690 kb on - strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.696 kb on + strand at 556.812 kb on + strand, within DZA65_RS02595 at 556.813 kb on - strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.814 kb on + strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.815 kb on - strand, within DZA65_RS02595 at 556.835 kb on - strand, within DZA65_RS02595
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 554,570 + -0.3 554,570 + -0.3 554,570 + +0.2 554,570 + +0.3 554,570 + -0.2 554,570 + -1.3 554,571 - -0.8 554,571 - +0.7 554,575 + +0.1 554,576 - -2.4 554,601 + +0.6 554,601 + +0.1 554,602 - -0.7 554,602 - +1.1 554,602 - -1.5 554,642 + +0.6 554,642 + -0.6 554,642 + -0.1 554,643 - -0.4 554,643 - -1.1 554,643 - +0.5 554,643 - +0.3 554,643 - -1.8 554,649 + -0.1 554,650 - -0.1 554,650 - -0.1 554,652 + -0.3 554,652 + +0.5 554,652 + -0.5 554,652 + +0.7 554,652 + +0.2 554,652 + -0.0 554,652 + +0.6 554,652 + -0.5 554,652 + -0.1 554,652 + -0.7 554,653 - +1.0 554,653 - -1.0 554,653 - +0.5 554,653 - -2.2 554,653 - -1.3 554,653 - -0.1 554,660 + +0.0 554,661 - -2.0 554,669 + +0.6 554,669 + -0.6 554,669 + +0.3 554,669 + -0.6 554,669 + -0.3 554,669 + +0.2 554,669 + +0.2 554,669 + -0.9 554,669 + +0.3 554,670 - -1.3 554,670 - -1.1 554,670 - -2.0 554,670 - +0.3 554,676 + +1.0 554,677 - -0.0 554,677 - -0.1 554,680 + +0.6 554,680 + -0.0 554,680 + -1.3 554,680 + +1.4 554,680 + -0.1 554,680 + +0.5 554,680 + +0.5 554,680 + -1.8 554,680 + -0.4 554,680 + +1.3 554,681 - +0.2 554,681 - +0.7 554,681 - +0.0 554,681 - +0.5 554,681 - -0.4 554,688 + -0.3 554,688 + -0.9 554,688 + -0.0 554,688 + -0.1 554,688 + -0.7 554,688 + +0.0 554,688 + +0.5 554,688 + -0.3 554,688 + -1.3 554,689 - -1.8 554,689 - -0.3 554,689 - -2.0 554,689 - -1.0 554,689 - -1.8 554,689 - -1.3 554,689 - -0.5 554,695 + +0.6 554,696 - -0.5 554,699 + -1.8 554,699 + -1.4 554,699 + +0.1 554,699 + -0.4 554,699 + +1.3 554,699 + -0.8 554,699 + +0.9 554,699 + -0.2 554,699 + +1.1 554,699 + -1.2 554,700 - +0.1 554,700 - -2.0 554,700 - -0.4 554,700 - +0.2 554,700 - -1.1 554,700 - -0.8 554,700 - +0.2 554,707 + +0.2 554,707 + -0.1 554,707 + -0.4 554,707 + +0.2 554,708 - -0.9 554,708 - +0.8 554,708 - +0.9 554,708 - +0.7 554,714 + +0.2 554,714 + -0.3 554,714 + -0.6 554,715 - +0.5 554,715 - +0.5 554,718 + +1.0 554,719 - -0.0 554,719 - +0.2 554,731 + -0.3 554,731 + +0.0 554,782 + +2.7 554,782 + -0.1 554,782 + +0.9 554,782 + -1.7 554,783 - +0.3 554,793 + +1.5 554,848 + -1.2 554,848 + -0.5 554,848 + +0.2 554,848 + +1.1 554,848 + -0.6 554,849 - -0.0 554,849 - -1.2 554,849 - +1.5 554,849 - -0.5 554,849 - -0.3 554,849 - -0.3 554,951 + +0.3 554,951 + +0.5 554,951 + +0.6 554,951 + +0.2 554,952 - -0.1 554,952 - -1.2 554,952 - -1.5 555,000 + DZA65_RS02580 0.16 +0.3 555,001 - DZA65_RS02580 0.16 +0.1 555,001 - DZA65_RS02580 0.16 +0.2 555,001 - DZA65_RS02580 0.16 -0.5 555,001 - DZA65_RS02580 0.16 +0.1 555,001 - DZA65_RS02580 0.16 +0.2 555,031 + DZA65_RS02580 0.20 -1.7 555,031 + DZA65_RS02580 0.20 +0.6 555,031 + DZA65_RS02580 0.20 -1.3 555,031 + DZA65_RS02580 0.20 -0.3 555,031 + DZA65_RS02580 0.20 +0.7 555,031 + DZA65_RS02580 0.20 -1.1 555,032 - DZA65_RS02580 0.20 +1.0 555,032 - DZA65_RS02580 0.20 -0.1 555,032 - DZA65_RS02580 0.20 +0.0 555,037 + DZA65_RS02580 0.21 +0.5 555,037 + DZA65_RS02580 0.21 +0.6 555,037 + DZA65_RS02580 0.21 -0.5 555,037 + DZA65_RS02580 0.21 +0.3 555,037 + DZA65_RS02580 0.21 +0.0 555,037 + DZA65_RS02580 0.21 +0.8 555,037 + DZA65_RS02580 0.21 +0.1 555,037 + DZA65_RS02580 0.21 -0.7 555,037 + +0.9 555,037 + DZA65_RS02580 0.21 -1.3 555,037 + DZA65_RS02580 0.21 +1.7 555,037 + DZA65_RS02580 0.21 -0.8 555,038 - DZA65_RS02580 0.21 -0.4 555,038 - DZA65_RS02580 0.21 -0.3 555,038 - DZA65_RS02580 0.21 -1.8 555,038 - DZA65_RS02580 0.21 +1.6 555,038 - DZA65_RS02580 0.21 -0.5 555,038 - DZA65_RS02580 0.21 +0.9 555,038 - DZA65_RS02580 0.21 -0.6 555,038 - DZA65_RS02580 0.21 +0.5 555,038 - DZA65_RS02580 0.21 +0.6 555,038 - DZA65_RS02580 0.21 +1.5 555,038 - DZA65_RS02580 0.21 -0.4 555,160 + DZA65_RS02580 0.39 +0.7 555,161 - DZA65_RS02580 0.39 +0.9 555,176 - DZA65_RS02580 0.42 +1.5 555,520 + +0.3 555,520 + +0.9 555,520 + +0.2 555,520 + -2.6 555,575 + -0.8 555,575 + +0.9 555,575 + +0.8 555,575 + +0.0 555,575 + -1.3 555,575 + -0.6 555,575 + -0.1 555,575 + -0.2 555,576 - +0.1 555,576 - +0.2 555,576 - -0.6 555,576 - -0.4 555,576 - -1.0 555,576 - -0.7 555,576 - -0.1 555,576 - +1.3 555,614 - DZA65_RS02585 0.17 +0.6 555,614 - DZA65_RS02585 0.17 +0.7 555,654 + DZA65_RS02585 0.29 -0.4 555,654 + DZA65_RS02585 0.29 -0.2 555,654 + DZA65_RS02585 0.29 +0.7 555,654 + DZA65_RS02585 0.29 +1.0 555,654 + DZA65_RS02585 0.29 -0.4 555,654 + DZA65_RS02585 0.29 -0.7 555,654 + DZA65_RS02585 0.29 -0.5 555,654 + DZA65_RS02585 0.29 +0.0 555,654 + DZA65_RS02585 0.29 -0.3 555,654 + DZA65_RS02585 0.29 -0.1 555,655 - DZA65_RS02585 0.29 -0.1 555,655 - DZA65_RS02585 0.29 -0.7 555,655 - DZA65_RS02585 0.29 +0.2 555,655 - DZA65_RS02585 0.29 +0.3 555,655 - DZA65_RS02585 0.29 -1.5 555,655 - DZA65_RS02585 0.29 +0.3 555,658 + DZA65_RS02585 0.30 -0.3 555,658 + DZA65_RS02585 0.30 -1.3 555,658 + DZA65_RS02585 0.30 -0.2 555,659 - DZA65_RS02585 0.30 -0.9 555,659 - DZA65_RS02585 0.30 -1.7 555,659 - DZA65_RS02585 0.30 -0.6 555,659 - DZA65_RS02585 0.30 +0.2 555,659 - DZA65_RS02585 0.30 -0.7 555,659 - DZA65_RS02585 0.30 -0.3 555,715 + DZA65_RS02585 0.47 -0.7 555,878 + -2.0 555,878 + +0.4 555,884 + +1.8 555,884 + -1.0 555,885 - -1.3 556,103 - DZA65_RS02590 0.43 +0.8 556,366 + +0.1 556,366 + +0.7 556,367 - -1.0 556,376 + +0.9 556,376 + -1.7 556,376 + -0.1 556,376 + -0.1 556,376 + -0.8 556,376 + +0.2 556,376 + -0.8 556,376 + +1.5 556,377 - -0.5 556,377 - -0.0 556,377 - -0.9 556,377 - -0.4 556,408 + -0.5 556,408 + -1.0 556,408 + +0.5 556,408 + -0.4 556,408 + +0.5 556,409 - +0.1 556,409 - +0.1 556,409 - -1.0 556,409 - -0.2 556,419 + -1.1 556,419 + -0.1 556,419 + -0.6 556,420 - +1.5 556,420 - -0.7 556,420 - +0.6 556,420 - +0.2 556,420 - -0.5 556,480 - -0.1 556,480 - +1.1 556,480 - -0.4 556,491 + -1.1 556,491 + -0.6 556,491 + +0.9 556,492 - +1.7 556,492 - -0.3 556,492 - +1.9 556,534 + +0.0 556,534 + +1.5 556,534 + -0.3 556,534 + +1.5 556,534 + +2.1 556,534 + -0.6 556,534 + -1.1 556,534 + +0.3 556,534 + -0.2 556,534 + -0.8 556,534 + -1.5 556,535 - +0.1 556,535 - -0.3 556,535 - -0.1 556,535 - -0.3 556,535 - +0.3 556,571 + +1.2 556,571 + +0.8 556,571 + +1.5 556,572 - +0.5 556,572 - +0.6 556,582 + -1.2 556,583 - +0.5 556,583 - -0.3 556,583 - -2.2 556,599 + +0.5 556,689 + -0.7 556,690 - -0.1 556,696 + +0.8 556,696 + +0.1 556,696 + -1.1 556,812 + DZA65_RS02595 0.21 -0.6 556,813 - DZA65_RS02595 0.21 -0.4 556,814 + DZA65_RS02595 0.21 +0.5 556,814 + DZA65_RS02595 0.21 -0.4 556,814 + DZA65_RS02595 0.21 +1.0 556,814 + DZA65_RS02595 0.21 +0.1 556,814 + DZA65_RS02595 0.21 -0.2 556,814 + DZA65_RS02595 0.21 -0.4 556,815 - DZA65_RS02595 0.21 -0.4 556,815 - DZA65_RS02595 0.21 -0.8 556,815 - DZA65_RS02595 0.21 -1.1 556,815 - DZA65_RS02595 0.21 -0.8 556,815 - DZA65_RS02595 0.21 +2.4 556,835 - DZA65_RS02595 0.23 -0.5
Or see this region's nucleotide sequence