Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02415 and DZA65_RS02420 overlap by 4 nucleotides DZA65_RS02420 and DZA65_RS02425 are separated by 76 nucleotides DZA65_RS02425 and DZA65_RS02430 overlap by 23 nucleotides
DZA65_RS02415: DZA65_RS02415 - ABC transporter ATP-binding protein, at 520,363 to 522,063
_RS02415
DZA65_RS02420: DZA65_RS02420 - ABC transporter permease, at 522,060 to 522,899
_RS02420
DZA65_RS02425: DZA65_RS02425 - ABC transporter permease, at 522,976 to 523,941
_RS02425
DZA65_RS02430: DZA65_RS02430 - ABC transporter substrate-binding protein, at 523,919 to 525,547
_RS02430
Position (kb) 522
523
524 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 522.012 kb on + strand at 522.012 kb on + strand at 522.013 kb on - strand at 522.019 kb on + strand at 522.034 kb on + strand at 522.034 kb on + strand at 522.035 kb on - strand at 522.035 kb on - strand at 522.035 kb on - strand at 522.038 kb on - strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.090 kb on + strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.091 kb on - strand at 522.329 kb on + strand, within DZA65_RS02420 at 522.330 kb on - strand, within DZA65_RS02420 at 522.330 kb on - strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.346 kb on + strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.347 kb on - strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.470 kb on + strand, within DZA65_RS02420 at 522.556 kb on - strand, within DZA65_RS02420 at 522.673 kb on + strand, within DZA65_RS02420 at 522.673 kb on + strand, within DZA65_RS02420 at 522.674 kb on - strand, within DZA65_RS02420 at 522.674 kb on - strand, within DZA65_RS02420 at 522.675 kb on + strand, within DZA65_RS02420 at 522.676 kb on - strand, within DZA65_RS02420 at 522.676 kb on - strand, within DZA65_RS02420 at 522.825 kb on + strand at 522.826 kb on - strand at 522.870 kb on - strand at 522.874 kb on + strand at 522.875 kb on - strand at 522.893 kb on + strand at 522.894 kb on - strand at 522.917 kb on + strand at 522.917 kb on + strand at 522.917 kb on + strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.918 kb on - strand at 522.925 kb on - strand at 522.933 kb on - strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.939 kb on + strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.940 kb on - strand at 522.948 kb on - strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.949 kb on + strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.950 kb on - strand at 522.954 kb on + strand at 522.954 kb on + strand at 522.955 kb on - strand at 522.963 kb on - strand at 522.963 kb on - strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.964 kb on + strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 522.965 kb on - strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.028 kb on + strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.029 kb on - strand at 523.465 kb on + strand, within DZA65_RS02425 at 523.466 kb on - strand, within DZA65_RS02425 at 523.481 kb on + strand, within DZA65_RS02425 at 523.482 kb on - strand, within DZA65_RS02425 at 523.670 kb on + strand, within DZA65_RS02425 at 523.718 kb on + strand, within DZA65_RS02425 at 523.719 kb on - strand, within DZA65_RS02425 at 523.719 kb on - strand, within DZA65_RS02425 at 523.921 kb on - strand at 523.927 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.941 kb on + strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.942 kb on - strand at 523.982 kb on + strand at 523.982 kb on + strand at 523.982 kb on + strand at 523.983 kb on - strand at 523.983 kb on - strand at 524.034 kb on + strand at 524.034 kb on + strand at 524.034 kb on + strand at 524.034 kb on + strand at 524.035 kb on - strand at 524.035 kb on - strand at 524.070 kb on + strand at 524.070 kb on + strand at 524.070 kb on + strand at 524.070 kb on + strand at 524.071 kb on - strand at 524.071 kb on - strand at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.169 kb on + strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.170 kb on - strand, within DZA65_RS02430 at 524.188 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.220 kb on + strand, within DZA65_RS02430 at 524.221 kb on - strand, within DZA65_RS02430 at 524.221 kb on - strand, within DZA65_RS02430 at 524.221 kb on - strand, within DZA65_RS02430 at 524.239 kb on - strand, within DZA65_RS02430 at 524.239 kb on - strand, within DZA65_RS02430 at 524.287 kb on + strand, within DZA65_RS02430 at 524.288 kb on - strand, within DZA65_RS02430 at 524.288 kb on - strand, within DZA65_RS02430 at 524.288 kb on - strand, within DZA65_RS02430 at 524.322 kb on + strand, within DZA65_RS02430 at 524.323 kb on - strand, within DZA65_RS02430 at 524.376 kb on + strand, within DZA65_RS02430 at 524.376 kb on + strand, within DZA65_RS02430 at 524.377 kb on - strand, within DZA65_RS02430 at 524.514 kb on + strand, within DZA65_RS02430 at 524.514 kb on + strand, within DZA65_RS02430 at 524.514 kb on + strand, within DZA65_RS02430 at 524.515 kb on - strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.517 kb on + strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.518 kb on - strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.653 kb on + strand, within DZA65_RS02430 at 524.654 kb on - strand, within DZA65_RS02430 at 524.654 kb on - strand, within DZA65_RS02430 at 524.661 kb on + strand at 524.695 kb on + strand, within DZA65_RS02430 at 524.695 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.699 kb on + strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.700 kb on - strand, within DZA65_RS02430 at 524.765 kb on + strand, within DZA65_RS02430 at 524.765 kb on + strand, within DZA65_RS02430 at 524.765 kb on + strand, within DZA65_RS02430 at 524.766 kb on - strand, within DZA65_RS02430 at 524.766 kb on - strand, within DZA65_RS02430 at 524.814 kb on + strand, within DZA65_RS02430 at 524.814 kb on + strand, within DZA65_RS02430 at 524.815 kb on - strand, within DZA65_RS02430 at 524.815 kb on - strand, within DZA65_RS02430 at 524.815 kb on - strand, within DZA65_RS02430 at 524.838 kb on + strand, within DZA65_RS02430 at 524.839 kb on - strand, within DZA65_RS02430 at 524.839 kb on - strand, within DZA65_RS02430 at 524.862 kb on + strand, within DZA65_RS02430 at 524.880 kb on + strand, within DZA65_RS02430 at 524.881 kb on - strand, within DZA65_RS02430
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 522,012 + -0.4 522,012 + +0.2 522,013 - -0.3 522,019 + -0.6 522,034 + +0.9 522,034 + +0.3 522,035 - +1.1 522,035 - -0.1 522,035 - -0.6 522,038 - -1.8 522,090 + -0.3 522,090 + -0.8 522,090 + +0.5 522,090 + +0.9 522,090 + -0.2 522,090 + -0.3 522,090 + +0.6 522,091 - -0.0 522,091 - -0.6 522,091 - -0.1 522,091 - -0.6 522,329 + DZA65_RS02420 0.32 -0.4 522,330 - DZA65_RS02420 0.32 -0.7 522,330 - DZA65_RS02420 0.32 -0.1 522,346 + DZA65_RS02420 0.34 -0.2 522,346 + DZA65_RS02420 0.34 -0.1 522,346 + DZA65_RS02420 0.34 -1.5 522,346 + DZA65_RS02420 0.34 -0.3 522,346 + DZA65_RS02420 0.34 +0.7 522,346 + DZA65_RS02420 0.34 +0.2 522,347 - DZA65_RS02420 0.34 +0.5 522,347 - DZA65_RS02420 0.34 -0.3 522,347 - DZA65_RS02420 0.34 -0.2 522,347 - DZA65_RS02420 0.34 -1.3 522,347 - DZA65_RS02420 0.34 +0.5 522,347 - DZA65_RS02420 0.34 +0.3 522,470 + DZA65_RS02420 0.49 +0.0 522,470 + DZA65_RS02420 0.49 +0.3 522,470 + DZA65_RS02420 0.49 +0.5 522,556 - DZA65_RS02420 0.59 -0.8 522,673 + DZA65_RS02420 0.73 -0.8 522,673 + DZA65_RS02420 0.73 +0.3 522,674 - DZA65_RS02420 0.73 -0.0 522,674 - DZA65_RS02420 0.73 -1.3 522,675 + DZA65_RS02420 0.73 -0.7 522,676 - DZA65_RS02420 0.73 +0.2 522,676 - DZA65_RS02420 0.73 +1.5 522,825 + -0.2 522,826 - +1.5 522,870 - -1.0 522,874 + -0.1 522,875 - -1.7 522,893 + -1.2 522,894 - +0.9 522,917 + -1.2 522,917 + +1.2 522,917 + +1.5 522,918 - -0.3 522,918 - -1.3 522,918 - +0.0 522,918 - -0.5 522,925 - +0.6 522,933 - -0.4 522,939 + -0.2 522,939 + +0.0 522,939 + -1.2 522,939 + -0.6 522,940 - -0.3 522,940 - -0.1 522,940 - -0.6 522,940 - -0.7 522,948 - -1.5 522,949 + -0.5 522,949 + -0.4 522,949 + +1.0 522,949 + +0.1 522,949 + -1.1 522,949 + -1.2 522,950 - -0.6 522,950 - +0.7 522,950 - -1.7 522,950 - -0.4 522,950 - +0.8 522,950 - -0.2 522,950 - +1.1 522,950 - +0.1 522,950 - -0.1 522,950 - +0.2 522,954 + +0.2 522,954 + +0.5 522,955 - +1.1 522,963 - -0.5 522,963 - -0.7 522,964 + +0.6 522,964 + -0.4 522,964 + +0.8 522,964 + -0.5 522,964 + +0.9 522,964 + -2.2 522,964 + -1.0 522,965 - -0.5 522,965 - -0.7 522,965 - -0.6 522,965 - -1.1 522,965 - +0.8 522,965 - +0.8 522,965 - -3.0 522,965 - +0.5 522,965 - +0.4 523,028 + -0.4 523,028 + +0.3 523,028 + +0.1 523,028 + -0.2 523,029 - -0.5 523,029 - -0.2 523,029 - +0.3 523,029 - -0.8 523,465 + DZA65_RS02425 0.51 +0.6 523,466 - DZA65_RS02425 0.51 -1.5 523,481 + DZA65_RS02425 0.52 -1.2 523,482 - DZA65_RS02425 0.52 +0.3 523,670 + DZA65_RS02425 0.72 +1.5 523,718 + DZA65_RS02425 0.77 +0.2 523,719 - DZA65_RS02425 0.77 +0.0 523,719 - DZA65_RS02425 0.77 -0.1 523,921 - -1.1 523,927 + -0.9 523,941 + +0.4 523,941 + -1.7 523,941 + +0.3 523,941 + -0.3 523,941 + -0.0 523,942 - +0.5 523,942 - +0.0 523,942 - +0.4 523,942 - +0.7 523,942 - -0.4 523,942 - +0.5 523,942 - -1.3 523,942 - -0.4 523,942 - -1.6 523,942 - -1.8 523,942 - -2.0 523,982 + -0.5 523,982 + -1.2 523,982 + +0.5 523,983 - +0.1 523,983 - +0.4 524,034 + +1.0 524,034 + -0.2 524,034 + +0.2 524,034 + -1.1 524,035 - -1.0 524,035 - -0.6 524,070 + -1.7 524,070 + +0.4 524,070 + -0.5 524,070 + -1.1 524,071 - -1.3 524,071 - -2.0 524,169 + DZA65_RS02430 0.15 -0.7 524,169 + DZA65_RS02430 0.15 -0.5 524,169 + DZA65_RS02430 0.15 +0.5 524,169 + DZA65_RS02430 0.15 +0.5 524,169 + DZA65_RS02430 0.15 -0.3 524,169 + DZA65_RS02430 0.15 -0.3 524,169 + DZA65_RS02430 0.15 +0.1 524,169 + DZA65_RS02430 0.15 +0.5 524,169 + DZA65_RS02430 0.15 -0.8 524,169 + DZA65_RS02430 0.15 -2.5 524,169 + DZA65_RS02430 0.15 -1.2 524,170 - DZA65_RS02430 0.15 -2.7 524,170 - DZA65_RS02430 0.15 -1.5 524,170 - DZA65_RS02430 0.15 +1.1 524,170 - DZA65_RS02430 0.15 -0.4 524,170 - DZA65_RS02430 0.15 -2.4 524,170 - DZA65_RS02430 0.15 -0.2 524,170 - DZA65_RS02430 0.15 +0.5 524,170 - DZA65_RS02430 0.15 +0.6 524,170 - DZA65_RS02430 0.15 -0.1 524,170 - DZA65_RS02430 0.15 -2.2 524,170 - DZA65_RS02430 0.15 -0.8 524,170 - -0.1 524,170 - DZA65_RS02430 0.15 -1.2 524,170 - DZA65_RS02430 0.15 +0.2 524,170 - DZA65_RS02430 0.15 +1.5 524,170 - DZA65_RS02430 0.15 +0.4 524,188 + DZA65_RS02430 0.17 -1.1 524,220 + DZA65_RS02430 0.18 -1.3 524,220 + DZA65_RS02430 0.18 +0.3 524,220 + DZA65_RS02430 0.18 -2.0 524,220 + DZA65_RS02430 0.18 -0.1 524,220 + DZA65_RS02430 0.18 +0.1 524,220 + DZA65_RS02430 0.18 +0.4 524,220 + DZA65_RS02430 0.18 -0.8 524,220 + DZA65_RS02430 0.18 +1.5 524,220 + DZA65_RS02430 0.18 +0.4 524,220 + DZA65_RS02430 0.18 -2.4 524,220 + DZA65_RS02430 0.18 -0.0 524,221 - DZA65_RS02430 0.19 -0.3 524,221 - DZA65_RS02430 0.19 +1.0 524,221 - DZA65_RS02430 0.19 -0.1 524,239 - DZA65_RS02430 0.20 -0.7 524,239 - DZA65_RS02430 0.20 -2.0 524,287 + DZA65_RS02430 0.23 -0.2 524,288 - DZA65_RS02430 0.23 -2.0 524,288 - DZA65_RS02430 0.23 -0.4 524,288 - DZA65_RS02430 0.23 -1.5 524,322 + DZA65_RS02430 0.25 +1.5 524,323 - DZA65_RS02430 0.25 -0.8 524,376 + DZA65_RS02430 0.28 +1.8 524,376 + DZA65_RS02430 0.28 -0.5 524,377 - DZA65_RS02430 0.28 +0.5 524,514 + DZA65_RS02430 0.37 -0.7 524,514 + DZA65_RS02430 0.37 +0.3 524,514 + DZA65_RS02430 0.37 -0.7 524,515 - DZA65_RS02430 0.37 -0.7 524,517 + DZA65_RS02430 0.37 -1.7 524,517 + DZA65_RS02430 0.37 +0.3 524,517 + DZA65_RS02430 0.37 -1.1 524,517 + DZA65_RS02430 0.37 -0.2 524,518 - DZA65_RS02430 0.37 -0.5 524,518 - DZA65_RS02430 0.37 +0.5 524,518 - DZA65_RS02430 0.37 +1.5 524,518 - DZA65_RS02430 0.37 -0.9 524,518 - DZA65_RS02430 0.37 -1.0 524,518 - DZA65_RS02430 0.37 +0.4 524,653 + DZA65_RS02430 0.45 -1.6 524,653 + DZA65_RS02430 0.45 -0.2 524,653 + DZA65_RS02430 0.45 -0.1 524,653 + DZA65_RS02430 0.45 +1.5 524,653 + DZA65_RS02430 0.45 +0.7 524,653 + DZA65_RS02430 0.45 +0.5 524,653 + DZA65_RS02430 0.45 -0.7 524,654 - DZA65_RS02430 0.45 -0.2 524,654 - DZA65_RS02430 0.45 -0.8 524,661 + -0.5 524,695 + DZA65_RS02430 0.48 +0.3 524,695 + DZA65_RS02430 0.48 -0.4 524,699 + DZA65_RS02430 0.48 +1.0 524,699 + DZA65_RS02430 0.48 -1.0 524,699 + DZA65_RS02430 0.48 -0.3 524,699 + DZA65_RS02430 0.48 -0.9 524,699 + DZA65_RS02430 0.48 -0.5 524,700 - DZA65_RS02430 0.48 -0.1 524,700 - DZA65_RS02430 0.48 -2.2 524,700 - DZA65_RS02430 0.48 -1.5 524,700 - DZA65_RS02430 0.48 -0.9 524,700 - DZA65_RS02430 0.48 -2.3 524,700 - DZA65_RS02430 0.48 +0.4 524,765 + DZA65_RS02430 0.52 +0.0 524,765 + DZA65_RS02430 0.52 -1.0 524,765 + DZA65_RS02430 0.52 +0.0 524,766 - DZA65_RS02430 0.52 -0.1 524,766 - DZA65_RS02430 0.52 -0.6 524,814 + DZA65_RS02430 0.55 +0.2 524,814 + DZA65_RS02430 0.55 +0.0 524,815 - DZA65_RS02430 0.55 -0.2 524,815 - DZA65_RS02430 0.55 +0.5 524,815 - DZA65_RS02430 0.55 -0.4 524,838 + DZA65_RS02430 0.56 -0.7 524,839 - DZA65_RS02430 0.56 -0.1 524,839 - DZA65_RS02430 0.56 -2.1 524,862 + DZA65_RS02430 0.58 -0.4 524,880 + DZA65_RS02430 0.59 +0.0 524,881 - DZA65_RS02430 0.59 -0.6
Or see this region's nucleotide sequence