Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02390 and DZA65_RS02395 are separated by 678 nucleotides DZA65_RS02395 and DZA65_RS02400 are separated by 26 nucleotides DZA65_RS02400 and DZA65_RS02405 are separated by 18 nucleotides
DZA65_RS02390: DZA65_RS02390 - IS630 family transposase, at 516,135 to 517,172
_RS02390
DZA65_RS02395: DZA65_RS02395 - HTH-type transcriptional activator RhaS, at 517,851 to 518,681
_RS02395
DZA65_RS02400: DZA65_RS02400 - HTH-type transcriptional activator RhaR, at 518,708 to 519,562
_RS02400
DZA65_RS02405: DZA65_RS02405 - hypothetical protein, at 519,581 to 519,865
_RS02405
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 517.253 kb on + strand at 517.253 kb on + strand at 517.256 kb on + strand at 517.256 kb on + strand at 517.269 kb on + strand at 517.269 kb on + strand at 517.269 kb on + strand at 517.269 kb on + strand at 517.273 kb on + strand at 517.273 kb on + strand at 517.273 kb on + strand at 517.273 kb on + strand at 517.277 kb on + strand at 517.277 kb on + strand at 517.277 kb on + strand at 517.277 kb on + strand at 517.301 kb on - strand at 517.309 kb on - strand at 517.320 kb on - strand at 517.322 kb on + strand at 517.322 kb on + strand at 517.322 kb on + strand at 517.323 kb on - strand at 517.407 kb on - strand at 517.407 kb on - strand at 517.407 kb on - strand at 517.407 kb on - strand at 517.414 kb on - strand at 517.421 kb on - strand at 517.421 kb on - strand at 517.430 kb on + strand at 517.430 kb on + strand at 517.430 kb on + strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.431 kb on - strand at 517.438 kb on + strand at 517.450 kb on - strand at 517.450 kb on - strand at 517.526 kb on + strand at 517.526 kb on + strand at 517.526 kb on + strand at 517.526 kb on + strand at 517.527 kb on - strand at 517.620 kb on + strand at 517.621 kb on - strand at 517.639 kb on + strand at 517.639 kb on + strand at 517.640 kb on - strand at 517.640 kb on - strand at 517.660 kb on + strand at 517.660 kb on + strand at 517.746 kb on - strand at 517.746 kb on - strand at 517.776 kb on + strand at 517.777 kb on - strand at 517.777 kb on - strand at 517.779 kb on + strand at 517.779 kb on + strand at 517.789 kb on + strand at 517.789 kb on + strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.790 kb on - strand at 517.796 kb on - strand at 517.806 kb on + strand at 517.806 kb on + strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.807 kb on - strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.812 kb on + strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.813 kb on - strand at 517.824 kb on + strand at 517.824 kb on + strand at 517.824 kb on + strand at 517.825 kb on - strand at 517.944 kb on + strand, within DZA65_RS02395 at 517.945 kb on - strand, within DZA65_RS02395 at 518.314 kb on + strand, within DZA65_RS02395 at 518.315 kb on - strand at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.399 kb on + strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.400 kb on - strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.459 kb on + strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand, within DZA65_RS02395 at 518.460 kb on - strand at 518.460 kb on - strand, within DZA65_RS02395 at 518.679 kb on + strand at 518.679 kb on + strand at 518.679 kb on + strand at 518.679 kb on + strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.680 kb on - strand at 518.685 kb on + strand at 518.686 kb on - strand at 518.730 kb on + strand at 518.730 kb on + strand at 518.730 kb on + strand at 518.731 kb on - strand at 518.744 kb on + strand at 518.744 kb on + strand at 518.744 kb on + strand at 518.745 kb on - strand at 518.745 kb on - strand at 518.764 kb on + strand at 518.764 kb on + strand at 518.764 kb on + strand at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.890 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.909 kb on + strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.910 kb on - strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.936 kb on + strand, within DZA65_RS02400 at 518.937 kb on - strand, within DZA65_RS02400 at 518.968 kb on + strand, within DZA65_RS02400 at 518.968 kb on + strand, within DZA65_RS02400 at 518.969 kb on - strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.975 kb on + strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.976 kb on - strand, within DZA65_RS02400 at 518.977 kb on + strand, within DZA65_RS02400 at 519.201 kb on - strand, within DZA65_RS02400 at 519.337 kb on + strand, within DZA65_RS02400 at 519.377 kb on + strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.423 kb on - strand, within DZA65_RS02400 at 519.479 kb on + strand at 519.582 kb on + strand at 519.582 kb on + strand at 519.583 kb on - strand at 519.621 kb on + strand, within DZA65_RS02405 at 519.622 kb on - strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.643 kb on + strand, within DZA65_RS02405 at 519.644 kb on - strand, within DZA65_RS02405 at 519.647 kb on + strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405 at 519.648 kb on - strand, within DZA65_RS02405
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 517,253 + +1.5 517,253 + -0.1 517,256 + -0.3 517,256 + -1.3 517,269 + -0.6 517,269 + -0.5 517,269 + -0.3 517,269 + -0.1 517,273 + +0.7 517,273 + -0.2 517,273 + +1.1 517,273 + +0.6 517,277 + +1.5 517,277 + +1.5 517,277 + -0.3 517,277 + -0.5 517,301 - +1.5 517,309 - -1.3 517,320 - -1.4 517,322 + +0.4 517,322 + -2.1 517,322 + -0.0 517,323 - -0.9 517,407 - -0.1 517,407 - +0.9 517,407 - +0.6 517,407 - -0.3 517,414 - -2.2 517,421 - -0.4 517,421 - -1.2 517,430 + -0.5 517,430 + -1.0 517,430 + -0.7 517,431 - +0.3 517,431 - -0.5 517,431 - -1.1 517,431 - +0.1 517,431 - -1.6 517,431 - -0.3 517,438 + +0.6 517,450 - -0.5 517,450 - +1.5 517,526 + +0.1 517,526 + -0.5 517,526 + +0.9 517,526 + -0.9 517,527 - -1.5 517,620 + -1.5 517,621 - +0.0 517,639 + -1.8 517,639 + -0.1 517,640 - -0.8 517,640 - -1.8 517,660 + +0.3 517,660 + -1.0 517,746 - +0.1 517,746 - +0.1 517,776 + -0.7 517,777 - +0.2 517,777 - -0.0 517,779 + -1.2 517,779 + +0.2 517,789 + -0.7 517,789 + -1.7 517,790 - +0.0 517,790 - -0.3 517,790 - +0.1 517,790 - -0.3 517,790 - +0.5 517,796 - +0.2 517,806 + +0.4 517,806 + -2.1 517,807 - -0.1 517,807 - -0.3 517,807 - +0.2 517,807 - -0.3 517,807 - +0.2 517,812 + +0.1 517,812 + -1.7 517,812 + +0.2 517,812 + +0.2 517,812 + +1.5 517,813 - +0.2 517,813 - -0.5 517,813 - -1.2 517,813 - -0.5 517,813 - +0.8 517,824 + -0.8 517,824 + +0.1 517,824 + -0.8 517,825 - +0.2 517,944 + DZA65_RS02395 0.11 -0.7 517,945 - DZA65_RS02395 0.11 -0.1 518,314 + DZA65_RS02395 0.56 +0.0 518,315 - -0.5 518,399 + DZA65_RS02395 0.66 -0.2 518,399 + DZA65_RS02395 0.66 -0.7 518,399 + DZA65_RS02395 0.66 -0.3 518,399 + DZA65_RS02395 0.66 -0.3 518,399 + DZA65_RS02395 0.66 -0.5 518,399 + DZA65_RS02395 0.66 -0.4 518,399 + DZA65_RS02395 0.66 -1.2 518,400 - DZA65_RS02395 0.66 -2.2 518,400 - DZA65_RS02395 0.66 -0.1 518,400 - DZA65_RS02395 0.66 +1.7 518,459 + DZA65_RS02395 0.73 -0.6 518,459 + DZA65_RS02395 0.73 +1.1 518,459 + DZA65_RS02395 0.73 -0.5 518,459 + DZA65_RS02395 0.73 +1.5 518,460 - DZA65_RS02395 0.73 -1.5 518,460 - DZA65_RS02395 0.73 -1.1 518,460 - DZA65_RS02395 0.73 +1.0 518,460 - DZA65_RS02395 0.73 -2.5 518,460 - -0.1 518,460 - DZA65_RS02395 0.73 -0.4 518,679 + +0.1 518,679 + -0.3 518,679 + +0.5 518,679 + +0.4 518,680 - +0.1 518,680 - +1.9 518,680 - -0.4 518,680 - -0.1 518,680 - +0.3 518,685 + +0.0 518,686 - -0.4 518,730 + -0.2 518,730 + -0.1 518,730 + -0.6 518,731 - -0.2 518,744 + +1.3 518,744 + +1.3 518,744 + -1.0 518,745 - -0.2 518,745 - -0.7 518,764 + -0.6 518,764 + -0.6 518,764 + +0.1 518,890 + DZA65_RS02400 0.21 -0.7 518,890 + DZA65_RS02400 0.21 -0.8 518,890 + DZA65_RS02400 0.21 +0.2 518,890 + DZA65_RS02400 0.21 +0.2 518,909 + DZA65_RS02400 0.24 +1.2 518,909 + DZA65_RS02400 0.24 -0.7 518,909 + DZA65_RS02400 0.24 -0.8 518,909 + DZA65_RS02400 0.24 -0.4 518,910 - DZA65_RS02400 0.24 +0.3 518,910 - DZA65_RS02400 0.24 -1.1 518,910 - DZA65_RS02400 0.24 -1.3 518,910 - DZA65_RS02400 0.24 -0.0 518,910 - DZA65_RS02400 0.24 -1.0 518,910 - DZA65_RS02400 0.24 -1.3 518,936 + DZA65_RS02400 0.27 +0.1 518,936 + DZA65_RS02400 0.27 +0.4 518,936 + DZA65_RS02400 0.27 +0.5 518,937 - DZA65_RS02400 0.27 -0.1 518,968 + DZA65_RS02400 0.30 +0.2 518,968 + DZA65_RS02400 0.30 +1.7 518,969 - DZA65_RS02400 0.31 -1.6 518,975 + DZA65_RS02400 0.31 +0.2 518,975 + DZA65_RS02400 0.31 -0.0 518,975 + DZA65_RS02400 0.31 -0.3 518,975 + DZA65_RS02400 0.31 -0.3 518,975 + DZA65_RS02400 0.31 +0.9 518,975 + DZA65_RS02400 0.31 -0.9 518,975 + DZA65_RS02400 0.31 +0.1 518,976 - DZA65_RS02400 0.31 -0.1 518,976 - DZA65_RS02400 0.31 -0.1 518,976 - DZA65_RS02400 0.31 +0.1 518,976 - DZA65_RS02400 0.31 -0.4 518,976 - DZA65_RS02400 0.31 -1.2 518,976 - DZA65_RS02400 0.31 +0.1 518,977 + DZA65_RS02400 0.31 -0.7 519,201 - DZA65_RS02400 0.58 +0.5 519,337 + DZA65_RS02400 0.74 +0.8 519,377 + DZA65_RS02400 0.78 -0.5 519,423 - DZA65_RS02400 0.84 +0.6 519,423 - DZA65_RS02400 0.84 -1.5 519,479 + -2.0 519,582 + -0.4 519,582 + -1.0 519,583 - -1.2 519,621 + DZA65_RS02405 0.14 -0.6 519,622 - DZA65_RS02405 0.14 -0.2 519,643 + DZA65_RS02405 0.22 -0.8 519,643 + DZA65_RS02405 0.22 +0.1 519,644 - DZA65_RS02405 0.22 -0.0 519,647 + DZA65_RS02405 0.23 -0.6 519,648 - DZA65_RS02405 0.24 -0.5 519,648 - DZA65_RS02405 0.24 -0.5
Or see this region's nucleotide sequence