Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02325 and DZA65_RS02330 are separated by 105 nucleotides DZA65_RS02330 and DZA65_RS02335 overlap by 4 nucleotides DZA65_RS02335 and DZA65_RS02340 are separated by 35 nucleotides
DZA65_RS02325: DZA65_RS02325 - ABC transporter permease, at 502,372 to 503,298
_RS02325
DZA65_RS02330: DZA65_RS02330 - ABC transporter ATP-binding protein, at 503,404 to 504,381
_RS02330
DZA65_RS02335: DZA65_RS02335 - ABC transporter ATP-binding protein, at 504,378 to 505,241
_RS02335
DZA65_RS02340: DZA65_RS02340 - M20 family metallopeptidase, at 505,277 to 506,695
_RS02340
Position (kb) 503
504
505 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 502.488 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.535 kb on + strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.536 kb on - strand, within DZA65_RS02325 at 502.568 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.769 kb on - strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.801 kb on + strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.802 kb on - strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.814 kb on + strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.815 kb on - strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.890 kb on + strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.891 kb on - strand, within DZA65_RS02325 at 502.956 kb on - strand, within DZA65_RS02325 at 503.006 kb on + strand, within DZA65_RS02325 at 503.126 kb on + strand, within DZA65_RS02325 at 503.127 kb on - strand at 503.159 kb on + strand, within DZA65_RS02325 at 503.169 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.176 kb on + strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.177 kb on - strand, within DZA65_RS02325 at 503.275 kb on - strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.324 kb on + strand at 503.325 kb on - strand at 503.325 kb on - strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.331 kb on + strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.332 kb on - strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.337 kb on + strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.338 kb on - strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.343 kb on + strand at 503.599 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.798 kb on - strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.886 kb on + strand, within DZA65_RS02330 at 503.887 kb on - strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.082 kb on + strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.083 kb on - strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.145 kb on + strand, within DZA65_RS02330 at 504.148 kb on - strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.168 kb on + strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.169 kb on - strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330 at 504.264 kb on + strand, within DZA65_RS02330 at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.314 kb on - strand at 504.420 kb on - strand at 504.420 kb on - strand at 504.437 kb on + strand at 504.437 kb on + strand at 504.437 kb on + strand at 504.438 kb on - strand at 504.524 kb on + strand, within DZA65_RS02335 at 504.525 kb on - strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.529 kb on + strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.530 kb on - strand, within DZA65_RS02335 at 504.539 kb on + strand, within DZA65_RS02335 at 504.724 kb on - strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.809 kb on + strand, within DZA65_RS02335 at 504.810 kb on - strand, within DZA65_RS02335 at 504.986 kb on - strand, within DZA65_RS02335 at 505.041 kb on + strand, within DZA65_RS02335 at 505.041 kb on + strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.042 kb on - strand, within DZA65_RS02335 at 505.058 kb on + strand, within DZA65_RS02335 at 505.077 kb on + strand, within DZA65_RS02335 at 505.077 kb on + strand, within DZA65_RS02335 at 505.078 kb on - strand, within DZA65_RS02335 at 505.078 kb on - strand, within DZA65_RS02335 at 505.145 kb on - strand, within DZA65_RS02335 at 505.145 kb on - strand, within DZA65_RS02335 at 505.167 kb on + strand at 505.167 kb on + strand at 505.167 kb on + strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.168 kb on - strand at 505.239 kb on + strand at 505.240 kb on - strand at 505.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 502,488 + DZA65_RS02325 0.13 +0.5 502,535 + DZA65_RS02325 0.18 +0.9 502,535 + DZA65_RS02325 0.18 +0.5 502,536 - DZA65_RS02325 0.18 +0.1 502,536 - DZA65_RS02325 0.18 +0.3 502,568 - DZA65_RS02325 0.21 +1.1 502,769 - DZA65_RS02325 0.43 +0.5 502,769 - DZA65_RS02325 0.43 +2.0 502,801 + DZA65_RS02325 0.46 -2.0 502,801 + DZA65_RS02325 0.46 -0.6 502,801 + DZA65_RS02325 0.46 -1.7 502,802 - DZA65_RS02325 0.46 +0.6 502,802 - DZA65_RS02325 0.46 +0.6 502,802 - DZA65_RS02325 0.46 +0.6 502,802 - DZA65_RS02325 0.46 +0.1 502,802 - DZA65_RS02325 0.46 +0.5 502,802 - DZA65_RS02325 0.46 -0.7 502,802 - DZA65_RS02325 0.46 -0.2 502,814 + DZA65_RS02325 0.48 -0.8 502,814 + DZA65_RS02325 0.48 -1.0 502,815 - DZA65_RS02325 0.48 -1.0 502,815 - DZA65_RS02325 0.48 +0.0 502,815 - DZA65_RS02325 0.48 +0.5 502,815 - DZA65_RS02325 0.48 +0.5 502,815 - DZA65_RS02325 0.48 -2.0 502,890 + DZA65_RS02325 0.56 +0.9 502,890 + DZA65_RS02325 0.56 -0.5 502,890 + DZA65_RS02325 0.56 -0.3 502,890 + DZA65_RS02325 0.56 +0.5 502,890 + +0.5 502,890 + DZA65_RS02325 0.56 -0.4 502,890 + DZA65_RS02325 0.56 +0.1 502,890 + DZA65_RS02325 0.56 +0.2 502,890 + DZA65_RS02325 0.56 -2.8 502,890 + DZA65_RS02325 0.56 -1.3 502,890 + DZA65_RS02325 0.56 -0.5 502,891 - DZA65_RS02325 0.56 +2.2 502,891 - DZA65_RS02325 0.56 -0.4 502,891 - DZA65_RS02325 0.56 +0.5 502,891 - DZA65_RS02325 0.56 -1.2 502,891 - DZA65_RS02325 0.56 -0.7 502,956 - DZA65_RS02325 0.63 -0.1 503,006 + DZA65_RS02325 0.68 -0.7 503,126 + DZA65_RS02325 0.81 +0.3 503,127 - -0.8 503,159 + DZA65_RS02325 0.85 +0.5 503,169 + DZA65_RS02325 0.86 -0.3 503,176 + DZA65_RS02325 0.87 -0.1 503,176 + DZA65_RS02325 0.87 -0.2 503,176 + DZA65_RS02325 0.87 -0.9 503,176 + DZA65_RS02325 0.87 -0.9 503,176 + DZA65_RS02325 0.87 -1.2 503,176 + DZA65_RS02325 0.87 +0.7 503,176 + DZA65_RS02325 0.87 -0.7 503,176 + DZA65_RS02325 0.87 +0.5 503,177 - DZA65_RS02325 0.87 +0.4 503,177 - DZA65_RS02325 0.87 +0.9 503,177 - DZA65_RS02325 0.87 -0.7 503,177 - DZA65_RS02325 0.87 -0.6 503,177 - DZA65_RS02325 0.87 -1.1 503,177 - DZA65_RS02325 0.87 -2.3 503,177 - DZA65_RS02325 0.87 -0.5 503,177 - DZA65_RS02325 0.87 -0.4 503,177 - DZA65_RS02325 0.87 -0.2 503,177 - DZA65_RS02325 0.87 +0.6 503,177 - DZA65_RS02325 0.87 +0.6 503,177 - DZA65_RS02325 0.87 -0.4 503,177 - DZA65_RS02325 0.87 -0.1 503,177 - DZA65_RS02325 0.87 +0.3 503,177 - DZA65_RS02325 0.87 +0.0 503,275 - -0.0 503,324 + +0.2 503,324 + -0.3 503,324 + -1.1 503,325 - -0.7 503,325 - +0.5 503,331 + +0.2 503,331 + -0.6 503,331 + -0.6 503,331 + +2.2 503,331 + -0.1 503,332 - -0.4 503,332 - +1.1 503,332 - +1.3 503,332 - -0.5 503,332 - -2.2 503,332 - -0.4 503,332 - -1.1 503,337 + -2.3 503,337 + -0.1 503,337 + +1.5 503,337 + +0.3 503,337 + +0.5 503,337 + +0.1 503,337 + +0.1 503,337 + +0.6 503,337 + -0.1 503,337 + -0.1 503,337 + -1.3 503,337 + +0.8 503,337 + -0.6 503,337 + +0.4 503,337 + +0.5 503,337 + -0.8 503,337 + -0.0 503,337 + -0.3 503,337 + +0.1 503,337 + -0.6 503,337 + -0.7 503,338 - -0.5 503,338 - +0.3 503,338 - +0.5 503,338 - +0.4 503,338 - +0.2 503,338 - +0.2 503,338 - +0.0 503,338 - +0.2 503,338 - -0.1 503,338 - +0.8 503,338 - -0.3 503,338 - -1.1 503,338 - -1.3 503,338 - +0.2 503,338 - -1.2 503,338 - -0.5 503,343 + -0.5 503,343 + +0.4 503,343 + -1.0 503,599 - DZA65_RS02330 0.20 +0.1 503,798 - DZA65_RS02330 0.40 +0.5 503,798 - DZA65_RS02330 0.40 +0.9 503,886 + DZA65_RS02330 0.49 +0.1 503,886 + DZA65_RS02330 0.49 +0.7 503,886 + DZA65_RS02330 0.49 -0.1 503,886 + DZA65_RS02330 0.49 +0.7 503,886 + DZA65_RS02330 0.49 +0.1 503,886 + DZA65_RS02330 0.49 +0.5 503,887 - DZA65_RS02330 0.49 +0.8 504,082 + DZA65_RS02330 0.69 -0.1 504,082 + DZA65_RS02330 0.69 -0.1 504,083 - DZA65_RS02330 0.69 +0.0 504,083 - DZA65_RS02330 0.69 -0.5 504,083 - DZA65_RS02330 0.69 +0.3 504,083 - DZA65_RS02330 0.69 +0.9 504,083 - DZA65_RS02330 0.69 -0.1 504,083 - DZA65_RS02330 0.69 -0.5 504,083 - DZA65_RS02330 0.69 +0.3 504,083 - DZA65_RS02330 0.69 -0.3 504,083 - DZA65_RS02330 0.69 -0.6 504,083 - DZA65_RS02330 0.69 +0.8 504,083 - DZA65_RS02330 0.69 +0.3 504,083 - DZA65_RS02330 0.69 +0.6 504,145 + DZA65_RS02330 0.76 +0.3 504,145 + DZA65_RS02330 0.76 +1.2 504,148 - DZA65_RS02330 0.76 -0.5 504,168 + DZA65_RS02330 0.78 -0.1 504,168 + DZA65_RS02330 0.78 -2.0 504,169 - DZA65_RS02330 0.78 -0.6 504,169 - DZA65_RS02330 0.78 -0.0 504,169 - DZA65_RS02330 0.78 -0.5 504,264 + DZA65_RS02330 0.88 -1.9 504,264 + DZA65_RS02330 0.88 +0.3 504,314 - +0.7 504,314 - -0.3 504,314 - +1.5 504,314 - -0.1 504,314 - +1.5 504,420 - +0.3 504,420 - -1.7 504,437 + +0.2 504,437 + -0.5 504,437 + +2.5 504,438 - +0.0 504,524 + DZA65_RS02335 0.17 -0.7 504,525 - DZA65_RS02335 0.17 -0.1 504,529 + DZA65_RS02335 0.17 +1.1 504,529 + DZA65_RS02335 0.17 +0.5 504,529 + DZA65_RS02335 0.17 -0.5 504,530 - DZA65_RS02335 0.18 -1.0 504,530 - DZA65_RS02335 0.18 +0.0 504,530 - DZA65_RS02335 0.18 -0.1 504,530 - DZA65_RS02335 0.18 -0.5 504,530 - DZA65_RS02335 0.18 -1.4 504,539 + DZA65_RS02335 0.19 -1.1 504,724 - DZA65_RS02335 0.40 -0.5 504,809 + DZA65_RS02335 0.50 -0.7 504,809 + DZA65_RS02335 0.50 -0.3 504,809 + DZA65_RS02335 0.50 -0.5 504,809 + DZA65_RS02335 0.50 -0.4 504,809 + DZA65_RS02335 0.50 +0.4 504,809 + DZA65_RS02335 0.50 +0.0 504,810 - DZA65_RS02335 0.50 -1.5 504,986 - DZA65_RS02335 0.70 -0.1 505,041 + DZA65_RS02335 0.77 -0.8 505,041 + DZA65_RS02335 0.77 -0.1 505,042 - DZA65_RS02335 0.77 -1.0 505,042 - DZA65_RS02335 0.77 +0.1 505,042 - DZA65_RS02335 0.77 +0.4 505,058 + DZA65_RS02335 0.79 -0.5 505,077 + DZA65_RS02335 0.81 -1.3 505,077 + DZA65_RS02335 0.81 +0.3 505,078 - DZA65_RS02335 0.81 -0.1 505,078 - DZA65_RS02335 0.81 +0.8 505,145 - DZA65_RS02335 0.89 -0.3 505,145 - DZA65_RS02335 0.89 -0.3 505,167 + -0.6 505,167 + +0.3 505,167 + +1.1 505,168 - -0.0 505,168 - +0.2 505,168 - -0.3 505,168 - +0.5 505,239 + -0.4 505,240 - -2.1 505,313 + -1.2
Or see this region's nucleotide sequence