Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02275

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02270 and DZA65_RS02275 are separated by 16 nucleotidesDZA65_RS02275 and DZA65_RS02280 overlap by 8 nucleotides DZA65_RS02270: DZA65_RS02270 - sugar ABC transporter ATP-binding protein, at 492,038 to 493,600 _RS02270 DZA65_RS02275: DZA65_RS02275 - ABC transporter permease, at 493,617 to 494,684 _RS02275 DZA65_RS02280: DZA65_RS02280 - FGGY-family carbohydrate kinase, at 494,677 to 496,188 _RS02280 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 492.621 kb on + strand, within DZA65_RS02270at 492.621 kb on + strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.622 kb on - strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.677 kb on + strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strandat 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.678 kb on - strand, within DZA65_RS02270at 492.926 kb on - strand, within DZA65_RS02270at 492.956 kb on + strand, within DZA65_RS02270at 492.956 kb on + strand, within DZA65_RS02270at 492.957 kb on - strand, within DZA65_RS02270at 492.957 kb on - strand, within DZA65_RS02270at 492.957 kb on - strand, within DZA65_RS02270at 493.415 kb on + strand, within DZA65_RS02270at 493.415 kb on + strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strand, within DZA65_RS02270at 493.416 kb on - strandat 493.416 kb on - strand, within DZA65_RS02270at 493.543 kb on - strandat 493.549 kb on + strandat 493.598 kb on + strandat 493.629 kb on + strandat 493.629 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.638 kb on + strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.639 kb on - strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.640 kb on + strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.641 kb on - strandat 493.644 kb on + strandat 493.644 kb on + strandat 493.644 kb on + strandat 493.644 kb on + strandat 493.644 kb on + strandat 493.644 kb on + strandat 493.644 kb on + strandat 493.645 kb on - strandat 493.645 kb on - strandat 493.645 kb on - strandat 493.645 kb on - strandat 493.645 kb on - strandat 493.997 kb on - strand, within DZA65_RS02275at 494.015 kb on + strand, within DZA65_RS02275at 494.015 kb on + strand, within DZA65_RS02275at 494.016 kb on - strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.031 kb on + strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.032 kb on - strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.076 kb on + strand, within DZA65_RS02275at 494.077 kb on - strand, within DZA65_RS02275at 494.077 kb on - strand, within DZA65_RS02275at 494.128 kb on + strand, within DZA65_RS02275at 494.128 kb on + strand, within DZA65_RS02275at 494.154 kb on + strand, within DZA65_RS02275at 494.155 kb on - strand, within DZA65_RS02275at 494.155 kb on - strand, within DZA65_RS02275at 494.155 kb on - strand, within DZA65_RS02275at 494.155 kb on - strand, within DZA65_RS02275at 494.155 kb on - strand, within DZA65_RS02275at 494.155 kb on - strand, within DZA65_RS02275at 494.199 kb on + strand, within DZA65_RS02275at 494.199 kb on + strand, within DZA65_RS02275at 494.199 kb on + strand, within DZA65_RS02275at 494.199 kb on + strand, within DZA65_RS02275at 494.200 kb on - strand, within DZA65_RS02275at 494.200 kb on - strand, within DZA65_RS02275at 494.200 kb on - strand, within DZA65_RS02275at 494.229 kb on + strand, within DZA65_RS02275at 494.229 kb on + strand, within DZA65_RS02275at 494.229 kb on + strand, within DZA65_RS02275at 494.230 kb on - strandat 494.230 kb on - strand, within DZA65_RS02275at 494.230 kb on - strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.231 kb on + strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.232 kb on - strand, within DZA65_RS02275at 494.235 kb on + strand, within DZA65_RS02275at 494.235 kb on + strand, within DZA65_RS02275at 494.235 kb on + strand, within DZA65_RS02275at 494.235 kb on + strand, within DZA65_RS02275at 494.235 kb on + strand, within DZA65_RS02275at 494.236 kb on - strand, within DZA65_RS02275at 494.236 kb on - strand, within DZA65_RS02275at 494.236 kb on - strand, within DZA65_RS02275at 494.236 kb on - strand, within DZA65_RS02275at 494.293 kb on + strand, within DZA65_RS02275at 494.683 kb on - strandat 494.864 kb on + strand, within DZA65_RS02280at 494.864 kb on + strand, within DZA65_RS02280at 495.422 kb on - strand, within DZA65_RS02280at 495.463 kb on + strand, within DZA65_RS02280at 495.463 kb on + strand, within DZA65_RS02280at 495.464 kb on - strand, within DZA65_RS02280at 495.464 kb on - strand, within DZA65_RS02280at 495.565 kb on + strand, within DZA65_RS02280at 495.566 kb on - strand, within DZA65_RS02280at 495.606 kb on - strand, within DZA65_RS02280at 495.617 kb on + strand, within DZA65_RS02280at 495.618 kb on - strand, within DZA65_RS02280at 495.634 kb on - strand, within DZA65_RS02280

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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492,621 + DZA65_RS02270 0.37 -1.0
492,621 + DZA65_RS02270 0.37 +0.3
492,622 - DZA65_RS02270 0.37 -1.7
492,622 - DZA65_RS02270 0.37 +0.3
492,622 - DZA65_RS02270 0.37 +1.2
492,622 - DZA65_RS02270 0.37 +0.3
492,677 + DZA65_RS02270 0.41 -0.5
492,677 + DZA65_RS02270 0.41 -0.7
492,677 + DZA65_RS02270 0.41 -1.4
492,677 + DZA65_RS02270 0.41 +0.5
492,677 + DZA65_RS02270 0.41 -0.2
492,677 + DZA65_RS02270 0.41 -1.1
492,677 + DZA65_RS02270 0.41 -0.1
492,678 - DZA65_RS02270 0.41 -0.0
492,678 - +1.5
492,678 - DZA65_RS02270 0.41 -0.7
492,678 - DZA65_RS02270 0.41 +0.2
492,678 - DZA65_RS02270 0.41 +0.3
492,678 - DZA65_RS02270 0.41 -0.4
492,678 - DZA65_RS02270 0.41 +0.2
492,926 - DZA65_RS02270 0.57 -0.2
492,956 + DZA65_RS02270 0.59 -0.3
492,956 + DZA65_RS02270 0.59 -0.7
492,957 - DZA65_RS02270 0.59 -0.9
492,957 - DZA65_RS02270 0.59 -0.6
492,957 - DZA65_RS02270 0.59 -1.0
493,415 + DZA65_RS02270 0.88 +1.8
493,415 + DZA65_RS02270 0.88 -0.2
493,416 - DZA65_RS02270 0.88 +0.7
493,416 - DZA65_RS02270 0.88 -0.8
493,416 - DZA65_RS02270 0.88 -1.4
493,416 - DZA65_RS02270 0.88 -0.1
493,416 - DZA65_RS02270 0.88 +0.0
493,416 - DZA65_RS02270 0.88 -0.4
493,416 - DZA65_RS02270 0.88 +1.2
493,416 - DZA65_RS02270 0.88 -0.0
493,416 - +2.1
493,416 - DZA65_RS02270 0.88 -0.1
493,543 - -1.3
493,549 + -0.8
493,598 + -0.8
493,629 + -0.0
493,629 + +0.5
493,638 + +0.3
493,638 + +0.8
493,638 + +0.3
493,638 + +1.1
493,638 + -0.1
493,638 + +1.1
493,638 + +0.3
493,638 + -0.1
493,638 + -0.1
493,638 + -1.9
493,638 + -0.3
493,638 + -0.4
493,638 + +0.5
493,638 + -0.3
493,638 + -0.7
493,638 + -0.5
493,638 + +0.1
493,638 + -0.8
493,638 + -0.3
493,638 + -0.3
493,639 - +1.5
493,639 - +0.7
493,639 - -0.3
493,639 - -0.3
493,639 - +0.5
493,639 - +0.3
493,639 - -0.1
493,639 - +0.3
493,639 - -0.1
493,639 - +0.3
493,639 - -0.7
493,639 - -0.1
493,639 - -0.4
493,639 - -0.5
493,639 - -0.4
493,639 - -0.1
493,639 - +0.8
493,639 - -0.6
493,639 - -0.1
493,639 - -0.3
493,639 - +0.9
493,639 - +0.9
493,640 + -1.2
493,640 + +0.0
493,640 + -0.8
493,640 + -0.9
493,640 + +2.5
493,640 + +1.7
493,640 + -0.0
493,640 + -0.6
493,640 + -0.7
493,640 + -0.5
493,640 + -0.5
493,640 + +0.1
493,640 + +0.5
493,640 + +0.8
493,640 + -0.2
493,640 + +0.4
493,640 + +0.1
493,640 + +0.4
493,640 + -1.8
493,640 + -0.1
493,640 + +0.4
493,640 + +0.1
493,640 + +0.1
493,640 + +0.4
493,641 - +0.4
493,641 - -0.1
493,641 - +0.1
493,641 - -0.1
493,641 - -0.5
493,641 - +0.3
493,641 - -0.7
493,641 - -0.2
493,641 - -0.7
493,641 - -1.0
493,641 - +0.4
493,641 - +0.2
493,641 - -0.7
493,641 - +0.2
493,641 - -0.7
493,641 - -0.3
493,641 - -1.3
493,641 - +0.3
493,641 - -0.8
493,641 - -0.5
493,641 - -1.8
493,641 - -0.1
493,641 - +0.9
493,641 - +0.5
493,641 - -0.9
493,641 - -0.5
493,641 - +0.3
493,644 + +0.2
493,644 + -1.3
493,644 + -1.3
493,644 + -0.1
493,644 + -0.6
493,644 + +1.5
493,644 + -1.1
493,645 - -1.0
493,645 - -0.6
493,645 - +1.5
493,645 - +1.1
493,645 - -0.1
493,997 - DZA65_RS02275 0.36 -1.0
494,015 + DZA65_RS02275 0.37 +1.5
494,015 + DZA65_RS02275 0.37 -1.1
494,016 - DZA65_RS02275 0.37 +0.4
494,031 + DZA65_RS02275 0.39 +0.5
494,031 + DZA65_RS02275 0.39 -0.8
494,031 + DZA65_RS02275 0.39 -2.1
494,031 + DZA65_RS02275 0.39 -0.8
494,031 + DZA65_RS02275 0.39 +0.7
494,031 + DZA65_RS02275 0.39 -1.7
494,031 + DZA65_RS02275 0.39 -1.5
494,031 + DZA65_RS02275 0.39 +0.0
494,031 + DZA65_RS02275 0.39 -1.3
494,031 + DZA65_RS02275 0.39 +0.5
494,031 + DZA65_RS02275 0.39 -0.1
494,031 + DZA65_RS02275 0.39 +2.1
494,031 + DZA65_RS02275 0.39 -0.6
494,031 + DZA65_RS02275 0.39 -0.3
494,031 + DZA65_RS02275 0.39 -0.1
494,031 + DZA65_RS02275 0.39 -0.3
494,031 + DZA65_RS02275 0.39 -1.1
494,031 + DZA65_RS02275 0.39 -0.7
494,031 + DZA65_RS02275 0.39 +0.3
494,032 - DZA65_RS02275 0.39 +0.7
494,032 - DZA65_RS02275 0.39 +1.2
494,032 - DZA65_RS02275 0.39 +0.5
494,032 - DZA65_RS02275 0.39 +0.2
494,032 - DZA65_RS02275 0.39 -0.0
494,032 - DZA65_RS02275 0.39 -0.3
494,032 - DZA65_RS02275 0.39 +0.1
494,032 - DZA65_RS02275 0.39 +1.4
494,032 - DZA65_RS02275 0.39 -1.7
494,032 - DZA65_RS02275 0.39 -0.2
494,032 - DZA65_RS02275 0.39 -0.5
494,032 - DZA65_RS02275 0.39 +0.4
494,032 - DZA65_RS02275 0.39 -0.9
494,032 - DZA65_RS02275 0.39 -0.8
494,032 - DZA65_RS02275 0.39 +0.9
494,032 - DZA65_RS02275 0.39 -0.4
494,032 - DZA65_RS02275 0.39 -0.5
494,032 - DZA65_RS02275 0.39 -0.1
494,032 - DZA65_RS02275 0.39 +0.5
494,032 - DZA65_RS02275 0.39 -0.1
494,076 + DZA65_RS02275 0.43 -0.1
494,076 + DZA65_RS02275 0.43 -0.4
494,076 + DZA65_RS02275 0.43 -1.4
494,076 + DZA65_RS02275 0.43 +1.5
494,076 + DZA65_RS02275 0.43 +1.0
494,076 + DZA65_RS02275 0.43 -0.8
494,076 + DZA65_RS02275 0.43 -0.9
494,076 + DZA65_RS02275 0.43 +0.2
494,077 - DZA65_RS02275 0.43 -0.3
494,077 - DZA65_RS02275 0.43 -1.5
494,128 + DZA65_RS02275 0.48 +0.1
494,128 + DZA65_RS02275 0.48 +0.2
494,154 + DZA65_RS02275 0.50 -0.2
494,155 - DZA65_RS02275 0.50 -0.3
494,155 - DZA65_RS02275 0.50 -0.3
494,155 - DZA65_RS02275 0.50 +0.4
494,155 - DZA65_RS02275 0.50 +0.1
494,155 - DZA65_RS02275 0.50 -0.2
494,155 - DZA65_RS02275 0.50 +0.4
494,199 + DZA65_RS02275 0.54 -1.9
494,199 + DZA65_RS02275 0.54 +0.2
494,199 + DZA65_RS02275 0.54 -0.1
494,199 + DZA65_RS02275 0.54 -0.3
494,200 - DZA65_RS02275 0.55 +0.7
494,200 - DZA65_RS02275 0.55 -1.7
494,200 - DZA65_RS02275 0.55 +1.2
494,229 + DZA65_RS02275 0.57 +0.3
494,229 + DZA65_RS02275 0.57 +0.3
494,229 + DZA65_RS02275 0.57 +1.2
494,230 - +0.9
494,230 - DZA65_RS02275 0.57 +0.2
494,230 - DZA65_RS02275 0.57 -1.9
494,231 + DZA65_RS02275 0.57 +0.2
494,231 + DZA65_RS02275 0.57 -1.5
494,231 + DZA65_RS02275 0.57 +1.6
494,231 + DZA65_RS02275 0.57 -0.1
494,231 + DZA65_RS02275 0.57 -0.1
494,231 + DZA65_RS02275 0.57 -1.4
494,231 + DZA65_RS02275 0.57 -0.3
494,231 + DZA65_RS02275 0.57 +1.0
494,231 + DZA65_RS02275 0.57 +0.4
494,232 - DZA65_RS02275 0.58 -1.3
494,232 - DZA65_RS02275 0.58 +0.9
494,232 - DZA65_RS02275 0.58 +0.2
494,232 - DZA65_RS02275 0.58 +0.5
494,232 - DZA65_RS02275 0.58 +1.0
494,232 - DZA65_RS02275 0.58 +0.2
494,232 - DZA65_RS02275 0.58 +0.9
494,232 - DZA65_RS02275 0.58 -0.3
494,232 - DZA65_RS02275 0.58 +0.9
494,232 - DZA65_RS02275 0.58 -0.7
494,232 - DZA65_RS02275 0.58 -0.5
494,235 + DZA65_RS02275 0.58 +0.8
494,235 + DZA65_RS02275 0.58 -0.8
494,235 + DZA65_RS02275 0.58 -1.3
494,235 + DZA65_RS02275 0.58 +0.5
494,235 + DZA65_RS02275 0.58 +0.4
494,236 - DZA65_RS02275 0.58 +0.6
494,236 - DZA65_RS02275 0.58 -0.7
494,236 - DZA65_RS02275 0.58 -0.8
494,236 - DZA65_RS02275 0.58 -0.2
494,293 + DZA65_RS02275 0.63 +0.6
494,683 - +0.2
494,864 + DZA65_RS02280 0.12 +0.1
494,864 + DZA65_RS02280 0.12 -0.8
495,422 - DZA65_RS02280 0.49 +0.3
495,463 + DZA65_RS02280 0.52 -0.3
495,463 + DZA65_RS02280 0.52 +0.3
495,464 - DZA65_RS02280 0.52 +0.8
495,464 - DZA65_RS02280 0.52 +0.5
495,565 + DZA65_RS02280 0.59 -0.8
495,566 - DZA65_RS02280 0.59 -0.9
495,606 - DZA65_RS02280 0.61 -0.5
495,617 + DZA65_RS02280 0.62 -1.3
495,618 - DZA65_RS02280 0.62 -1.1
495,634 - DZA65_RS02280 0.63 +0.8

Or see this region's nucleotide sequence