Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02145 and DZA65_RS02150 overlap by 11 nucleotides DZA65_RS02150 and DZA65_RS02160 are separated by 297 nucleotides DZA65_RS02160 and DZA65_RS02165 are separated by 28 nucleotides DZA65_RS02165 and DZA65_RS02170 overlap by 10 nucleotides
DZA65_RS02145: DZA65_RS02145 - type II toxin-antitoxin system RelE/ParE family toxin, at 472,540 to 472,860
_RS02145
DZA65_RS02150: DZA65_RS02150 - helix-turn-helix transcriptional regulator, at 472,850 to 473,134
_RS02150
DZA65_RS02160: DZA65_RS02160 - hypothetical protein, at 473,432 to 473,833
_RS02160
DZA65_RS02165: DZA65_RS02165 - GNAT family N-acetyltransferase, at 473,862 to 474,341
_RS02165
DZA65_RS02170: DZA65_RS02170 - DUF1778 domain-containing protein, at 474,332 to 474,604
_RS02170
Position (kb) 473
474 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 472.455 kb on + strand at 472.455 kb on + strand at 472.456 kb on - strand at 472.512 kb on + strand at 472.524 kb on + strand at 472.524 kb on + strand at 472.524 kb on + strand at 472.525 kb on - strand at 472.527 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.543 kb on + strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.544 kb on - strand at 472.583 kb on - strand, within DZA65_RS02145 at 472.583 kb on - strand, within DZA65_RS02145 at 472.583 kb on - strand, within DZA65_RS02145 at 472.599 kb on + strand, within DZA65_RS02145 at 472.599 kb on + strand, within DZA65_RS02145 at 472.641 kb on + strand, within DZA65_RS02145 at 472.655 kb on + strand, within DZA65_RS02145 at 472.656 kb on - strand, within DZA65_RS02145 at 472.656 kb on - strand, within DZA65_RS02145 at 472.701 kb on - strand, within DZA65_RS02145 at 472.710 kb on + strand, within DZA65_RS02145 at 472.711 kb on - strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.755 kb on + strand, within DZA65_RS02145 at 472.756 kb on - strand, within DZA65_RS02145 at 472.756 kb on - strand, within DZA65_RS02145 at 472.756 kb on - strand at 472.756 kb on - strand, within DZA65_RS02145 at 472.762 kb on + strand, within DZA65_RS02145 at 472.762 kb on + strand, within DZA65_RS02145 at 472.764 kb on + strand, within DZA65_RS02145 at 472.765 kb on - strand, within DZA65_RS02145 at 472.770 kb on - strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.814 kb on + strand, within DZA65_RS02145 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 472.996 kb on + strand, within DZA65_RS02150 at 473.058 kb on + strand, within DZA65_RS02150 at 473.082 kb on + strand, within DZA65_RS02150 at 473.082 kb on + strand, within DZA65_RS02150 at 473.133 kb on - strand at 473.344 kb on - strand at 473.362 kb on + strand at 473.362 kb on + strand at 473.363 kb on - strand at 473.363 kb on - strand at 473.379 kb on + strand at 473.380 kb on - strand at 473.382 kb on + strand at 473.382 kb on + strand at 473.382 kb on + strand at 473.383 kb on - strand at 473.388 kb on + strand at 473.389 kb on - strand at 473.389 kb on - strand at 473.389 kb on - strand at 473.392 kb on + strand at 473.393 kb on - strand at 473.393 kb on - strand at 473.407 kb on + strand at 473.408 kb on - strand at 473.408 kb on - strand at 473.410 kb on + strand at 473.411 kb on - strand at 473.411 kb on - strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.452 kb on + strand at 473.453 kb on - strand at 473.453 kb on - strand at 473.453 kb on - strand at 473.476 kb on + strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.477 kb on - strand, within DZA65_RS02160 at 473.509 kb on + strand, within DZA65_RS02160 at 473.509 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.511 kb on + strand, within DZA65_RS02160 at 473.512 kb on - strand, within DZA65_RS02160 at 473.512 kb on - strand, within DZA65_RS02160 at 473.519 kb on + strand, within DZA65_RS02160 at 473.519 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.552 kb on + strand, within DZA65_RS02160 at 473.553 kb on - strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.556 kb on + strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.557 kb on - strand, within DZA65_RS02160 at 473.560 kb on + strand, within DZA65_RS02160 at 473.561 kb on - strand, within DZA65_RS02160 at 473.591 kb on + strand, within DZA65_RS02160 at 473.609 kb on + strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.610 kb on - strand, within DZA65_RS02160 at 473.626 kb on - strand at 473.626 kb on - strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.638 kb on + strand, within DZA65_RS02160 at 473.639 kb on - strand, within DZA65_RS02160 at 473.639 kb on - strand, within DZA65_RS02160 at 473.642 kb on - strand, within DZA65_RS02160 at 473.668 kb on + strand, within DZA65_RS02160 at 473.700 kb on - strand, within DZA65_RS02160 at 473.700 kb on - strand at 473.730 kb on - strand, within DZA65_RS02160 at 473.797 kb on + strand at 473.797 kb on + strand at 473.798 kb on - strand at 473.801 kb on + strand at 473.801 kb on + strand at 473.802 kb on - strand at 473.818 kb on + strand at 473.819 kb on - strand at 473.822 kb on + strand at 473.861 kb on - strand at 473.878 kb on - strand at 473.896 kb on - strand at 473.896 kb on - strand at 473.926 kb on + strand, within DZA65_RS02165 at 473.927 kb on - strand, within DZA65_RS02165 at 473.927 kb on - strand, within DZA65_RS02165 at 473.958 kb on + strand, within DZA65_RS02165 at 473.958 kb on + strand, within DZA65_RS02165 at 473.959 kb on - strand at 473.964 kb on + strand, within DZA65_RS02165 at 473.965 kb on - strand, within DZA65_RS02165 at 473.980 kb on - strand, within DZA65_RS02165 at 473.991 kb on + strand, within DZA65_RS02165 at 473.991 kb on + strand, within DZA65_RS02165 at 473.992 kb on - strand, within DZA65_RS02165 at 473.992 kb on - strand, within DZA65_RS02165 at 474.009 kb on + strand, within DZA65_RS02165 at 474.045 kb on - strand, within DZA65_RS02165 at 474.045 kb on - strand, within DZA65_RS02165 at 474.070 kb on - strand, within DZA65_RS02165 at 474.070 kb on - strand, within DZA65_RS02165 at 474.074 kb on + strand, within DZA65_RS02165 at 474.075 kb on - strand, within DZA65_RS02165 at 474.107 kb on + strand, within DZA65_RS02165 at 474.107 kb on + strand, within DZA65_RS02165 at 474.107 kb on + strand at 474.107 kb on + strand, within DZA65_RS02165 at 474.107 kb on + strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.166 kb on + strand, within DZA65_RS02165 at 474.166 kb on + strand, within DZA65_RS02165 at 474.166 kb on + strand, within DZA65_RS02165 at 474.167 kb on - strand, within DZA65_RS02165 at 474.167 kb on - strand, within DZA65_RS02165 at 474.167 kb on - strand, within DZA65_RS02165 at 474.318 kb on + strand at 474.319 kb on - strand at 474.319 kb on - strand at 474.319 kb on - strand at 474.319 kb on - strand at 474.644 kb on + strand at 474.644 kb on + strand at 474.645 kb on - strand at 474.645 kb on - strand at 474.655 kb on - strand at 474.663 kb on + strand at 474.663 kb on + strand at 474.713 kb on - strand at 474.759 kb on + strand at 474.759 kb on + strand at 474.760 kb on - strand at 474.760 kb on - strand at 474.781 kb on - strand at 474.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 472,455 + -0.7 472,455 + +0.2 472,456 - -1.0 472,512 + -0.8 472,524 + -0.7 472,524 + -0.5 472,524 + +0.8 472,525 - -0.6 472,527 + -0.2 472,543 + -0.5 472,543 + +0.0 472,543 + -0.6 472,543 + +1.2 472,543 + -1.0 472,543 + -1.7 472,543 + -0.3 472,543 + +1.1 472,543 + +0.1 472,544 - +0.0 472,544 - -0.6 472,544 - +0.8 472,544 - -1.0 472,544 - +0.2 472,544 - -1.5 472,583 - DZA65_RS02145 0.13 -0.4 472,583 - DZA65_RS02145 0.13 +1.0 472,583 - DZA65_RS02145 0.13 +2.1 472,599 + DZA65_RS02145 0.18 +0.7 472,599 + DZA65_RS02145 0.18 -0.1 472,641 + DZA65_RS02145 0.31 -1.6 472,655 + DZA65_RS02145 0.36 -0.1 472,656 - DZA65_RS02145 0.36 -0.2 472,656 - DZA65_RS02145 0.36 +1.9 472,701 - DZA65_RS02145 0.50 +0.4 472,710 + DZA65_RS02145 0.53 -1.4 472,711 - DZA65_RS02145 0.53 +0.3 472,755 + DZA65_RS02145 0.67 +0.3 472,755 + DZA65_RS02145 0.67 +0.5 472,755 + DZA65_RS02145 0.67 -1.4 472,755 + DZA65_RS02145 0.67 +0.5 472,755 + DZA65_RS02145 0.67 -0.8 472,755 + DZA65_RS02145 0.67 -0.4 472,755 + DZA65_RS02145 0.67 -0.2 472,756 - DZA65_RS02145 0.67 +1.5 472,756 - DZA65_RS02145 0.67 -0.5 472,756 - -0.1 472,756 - DZA65_RS02145 0.67 -0.1 472,762 + DZA65_RS02145 0.69 -1.1 472,762 + DZA65_RS02145 0.69 +0.4 472,764 + DZA65_RS02145 0.70 -0.7 472,765 - DZA65_RS02145 0.70 +1.5 472,770 - DZA65_RS02145 0.72 +0.4 472,814 + DZA65_RS02145 0.85 -0.3 472,814 + DZA65_RS02145 0.85 -0.0 472,814 + DZA65_RS02145 0.85 -1.3 472,814 + DZA65_RS02145 0.85 -1.0 472,996 + DZA65_RS02150 0.51 +0.1 472,996 + DZA65_RS02150 0.51 +0.4 472,996 + DZA65_RS02150 0.51 -0.7 472,996 + DZA65_RS02150 0.51 +0.1 472,996 + DZA65_RS02150 0.51 -0.6 472,996 + DZA65_RS02150 0.51 +0.2 473,058 + DZA65_RS02150 0.73 -0.1 473,082 + DZA65_RS02150 0.81 -0.4 473,082 + DZA65_RS02150 0.81 -1.1 473,133 - +0.3 473,344 - -1.9 473,362 + +1.3 473,362 + +0.6 473,363 - +0.4 473,363 - +2.5 473,379 + -0.3 473,380 - -1.3 473,382 + -1.1 473,382 + +0.5 473,382 + -0.6 473,383 - -1.5 473,388 + -0.6 473,389 - +0.5 473,389 - -0.7 473,389 - -0.1 473,392 + -1.9 473,393 - -0.3 473,393 - +0.3 473,407 + +0.5 473,408 - -1.6 473,408 - +1.5 473,410 + +0.0 473,411 - +0.2 473,411 - -1.3 473,452 + +0.3 473,452 + +0.7 473,452 + -0.3 473,452 + -1.8 473,452 + -0.1 473,453 - +0.4 473,453 - -0.3 473,453 - +0.1 473,476 + DZA65_RS02160 0.11 +0.5 473,477 - DZA65_RS02160 0.11 -0.1 473,477 - DZA65_RS02160 0.11 -0.6 473,477 - DZA65_RS02160 0.11 +0.2 473,509 + DZA65_RS02160 0.19 +0.1 473,509 + DZA65_RS02160 0.19 -0.9 473,511 + DZA65_RS02160 0.20 -0.9 473,511 + DZA65_RS02160 0.20 +0.2 473,511 + DZA65_RS02160 0.20 -0.7 473,511 + DZA65_RS02160 0.20 -0.2 473,511 + DZA65_RS02160 0.20 +0.3 473,512 - DZA65_RS02160 0.20 -0.1 473,512 - DZA65_RS02160 0.20 +1.3 473,519 + DZA65_RS02160 0.22 -0.1 473,519 + DZA65_RS02160 0.22 -0.8 473,552 + DZA65_RS02160 0.30 -0.7 473,552 + DZA65_RS02160 0.30 -2.6 473,552 + DZA65_RS02160 0.30 -0.6 473,553 - DZA65_RS02160 0.30 -2.6 473,556 + DZA65_RS02160 0.31 +0.8 473,556 + DZA65_RS02160 0.31 -0.6 473,556 + DZA65_RS02160 0.31 -0.7 473,556 + DZA65_RS02160 0.31 -1.3 473,556 + DZA65_RS02160 0.31 -0.1 473,556 + DZA65_RS02160 0.31 -0.4 473,556 + DZA65_RS02160 0.31 +0.5 473,557 - DZA65_RS02160 0.31 -1.1 473,557 - +0.5 473,557 - DZA65_RS02160 0.31 -0.1 473,557 - DZA65_RS02160 0.31 +1.7 473,557 - DZA65_RS02160 0.31 -0.4 473,557 - DZA65_RS02160 0.31 +0.4 473,560 + DZA65_RS02160 0.32 -0.4 473,561 - DZA65_RS02160 0.32 -0.5 473,591 + DZA65_RS02160 0.40 -2.6 473,609 + DZA65_RS02160 0.44 -0.8 473,610 - DZA65_RS02160 0.44 -1.5 473,610 - DZA65_RS02160 0.44 -0.4 473,610 - DZA65_RS02160 0.44 -0.5 473,626 - -0.1 473,626 - DZA65_RS02160 0.48 +0.4 473,638 + DZA65_RS02160 0.51 -1.2 473,638 + DZA65_RS02160 0.51 -0.8 473,638 + DZA65_RS02160 0.51 +0.4 473,639 - DZA65_RS02160 0.51 -0.3 473,639 - DZA65_RS02160 0.51 -1.6 473,642 - DZA65_RS02160 0.52 +0.7 473,668 + DZA65_RS02160 0.59 -0.6 473,700 - DZA65_RS02160 0.67 -0.6 473,700 - +3.1 473,730 - DZA65_RS02160 0.74 -1.8 473,797 + -0.2 473,797 + -1.1 473,798 - -0.1 473,801 + -0.1 473,801 + -0.9 473,802 - -0.8 473,818 + -0.6 473,819 - -1.6 473,822 + -0.4 473,861 - +1.1 473,878 - -0.5 473,896 - -0.6 473,896 - -0.8 473,926 + DZA65_RS02165 0.13 -0.3 473,927 - DZA65_RS02165 0.14 -2.3 473,927 - DZA65_RS02165 0.14 -0.7 473,958 + DZA65_RS02165 0.20 -0.1 473,958 + DZA65_RS02165 0.20 -0.1 473,959 - +2.5 473,964 + DZA65_RS02165 0.21 -2.0 473,965 - DZA65_RS02165 0.21 -0.6 473,980 - DZA65_RS02165 0.25 +0.5 473,991 + DZA65_RS02165 0.27 +0.2 473,991 + DZA65_RS02165 0.27 -0.1 473,992 - DZA65_RS02165 0.27 -0.9 473,992 - DZA65_RS02165 0.27 -1.0 474,009 + DZA65_RS02165 0.31 -0.1 474,045 - DZA65_RS02165 0.38 -0.1 474,045 - DZA65_RS02165 0.38 -3.1 474,070 - DZA65_RS02165 0.43 +0.7 474,070 - DZA65_RS02165 0.43 -1.1 474,074 + DZA65_RS02165 0.44 +0.2 474,075 - DZA65_RS02165 0.44 -1.4 474,107 + DZA65_RS02165 0.51 -1.6 474,107 + DZA65_RS02165 0.51 +0.9 474,107 + +3.9 474,107 + DZA65_RS02165 0.51 -1.9 474,107 + DZA65_RS02165 0.51 +0.1 474,108 - DZA65_RS02165 0.51 -0.1 474,108 - DZA65_RS02165 0.51 +1.1 474,108 - DZA65_RS02165 0.51 -0.8 474,108 - DZA65_RS02165 0.51 -2.3 474,166 + DZA65_RS02165 0.63 -1.3 474,166 + DZA65_RS02165 0.63 -0.5 474,166 + DZA65_RS02165 0.63 +0.3 474,167 - DZA65_RS02165 0.64 -1.6 474,167 - DZA65_RS02165 0.64 +0.5 474,167 - DZA65_RS02165 0.64 +0.2 474,318 + +0.9 474,319 - -0.5 474,319 - +1.1 474,319 - +0.5 474,319 - -0.4 474,644 + +0.7 474,644 + +0.7 474,645 - -0.1 474,645 - -0.8 474,655 - +0.7 474,663 + +1.4 474,663 + +0.3 474,713 - -0.1 474,759 + +1.0 474,759 + +0.2 474,760 - +0.1 474,760 - -0.3 474,781 - -1.1 474,781 - +0.9
Or see this region's nucleotide sequence