Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02085 and DZA65_RS02090 are separated by 43 nucleotides DZA65_RS02090 and DZA65_RS02095 are separated by 131 nucleotides DZA65_RS02095 and DZA65_RS02100 are separated by 95 nucleotides DZA65_RS02100 and DZA65_RS02105 are separated by 222 nucleotides
DZA65_RS02085: DZA65_RS02085 - dNTP triphosphohydrolase, at 460,229 to 461,446
_RS02085
DZA65_RS02090: DZA65_RS02090 - TIGR04141 family sporadically distributed protein, at 461,490 to 463,118
_RS02090
DZA65_RS02095: DZA65_RS02095 - helix-turn-helix transcriptional regulator, at 463,250 to 463,465
_RS02095
DZA65_RS02100: DZA65_RS02100 - transcriptional regulator, at 463,561 to 463,827
_RS02100
DZA65_RS02105: DZA65_RS02105 - AAA family ATPase, at 464,050 to 466,095
_RS02105
Position (kb) 461
462
463
464 Strain fitness (log2 ratio) -2
-1
0
1
2 at 460.503 kb on + strand, within DZA65_RS02085 at 460.536 kb on + strand, within DZA65_RS02085 at 460.812 kb on + strand, within DZA65_RS02085 at 460.813 kb on - strand, within DZA65_RS02085 at 460.907 kb on + strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.908 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.978 kb on - strand, within DZA65_RS02085 at 460.986 kb on + strand, within DZA65_RS02085 at 460.987 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.083 kb on - strand, within DZA65_RS02085 at 461.105 kb on - strand, within DZA65_RS02085 at 461.112 kb on + strand, within DZA65_RS02085 at 461.131 kb on + strand, within DZA65_RS02085 at 461.134 kb on - strand, within DZA65_RS02085 at 461.150 kb on - strand, within DZA65_RS02085 at 461.166 kb on + strand at 461.274 kb on - strand, within DZA65_RS02085 at 461.275 kb on + strand, within DZA65_RS02085 at 461.279 kb on - strand, within DZA65_RS02085 at 461.281 kb on + strand, within DZA65_RS02085 at 461.282 kb on - strand, within DZA65_RS02085 at 461.302 kb on - strand, within DZA65_RS02085 at 461.305 kb on - strand, within DZA65_RS02085 at 461.338 kb on + strand at 461.390 kb on - strand at 461.434 kb on - strand at 461.528 kb on - strand at 461.528 kb on - strand at 461.632 kb on + strand at 461.751 kb on - strand, within DZA65_RS02090 at 461.895 kb on + strand, within DZA65_RS02090 at 461.896 kb on - strand, within DZA65_RS02090 at 461.904 kb on - strand, within DZA65_RS02090 at 461.931 kb on - strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.262 kb on + strand, within DZA65_RS02090 at 462.263 kb on - strand, within DZA65_RS02090 at 462.300 kb on - strand, within DZA65_RS02090 at 462.303 kb on + strand, within DZA65_RS02090 at 462.453 kb on - strand at 462.453 kb on - strand, within DZA65_RS02090 at 462.453 kb on - strand, within DZA65_RS02090 at 462.453 kb on - strand, within DZA65_RS02090 at 462.453 kb on - strand, within DZA65_RS02090 at 462.489 kb on + strand, within DZA65_RS02090 at 462.492 kb on + strand, within DZA65_RS02090 at 462.493 kb on - strand, within DZA65_RS02090 at 462.621 kb on + strand, within DZA65_RS02090 at 462.678 kb on - strand, within DZA65_RS02090 at 462.679 kb on + strand, within DZA65_RS02090 at 463.000 kb on + strand at 463.025 kb on + strand at 463.026 kb on - strand at 463.252 kb on - strand at 463.401 kb on + strand, within DZA65_RS02095 at 463.402 kb on - strand at 463.402 kb on - strand, within DZA65_RS02095 at 463.402 kb on - strand, within DZA65_RS02095 at 463.402 kb on - strand, within DZA65_RS02095 at 463.488 kb on - strand at 463.488 kb on - strand at 463.488 kb on - strand at 463.491 kb on + strand at 463.491 kb on + strand at 463.491 kb on + strand at 463.492 kb on - strand at 463.492 kb on - strand at 463.501 kb on + strand at 463.501 kb on + strand at 463.502 kb on - strand at 463.502 kb on - strand at 463.516 kb on + strand at 463.519 kb on + strand at 463.519 kb on + strand at 463.520 kb on - strand at 463.520 kb on - strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.523 kb on + strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.524 kb on - strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.542 kb on - strand at 463.544 kb on + strand at 463.548 kb on + strand at 463.549 kb on - strand at 463.549 kb on - strand at 463.549 kb on - strand at 463.560 kb on + strand at 463.560 kb on + strand at 463.560 kb on + strand at 463.560 kb on + strand at 463.561 kb on - strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.566 kb on + strand at 463.567 kb on - strand at 463.567 kb on - strand at 463.567 kb on - strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.570 kb on + strand at 463.571 kb on - strand at 463.571 kb on - strand at 463.571 kb on - strand at 463.571 kb on - strand at 463.685 kb on + strand, within DZA65_RS02100 at 463.686 kb on - strand, within DZA65_RS02100 at 463.686 kb on - strand, within DZA65_RS02100 at 463.762 kb on + strand, within DZA65_RS02100 at 463.825 kb on + strand at 463.825 kb on + strand at 463.825 kb on + strand at 463.825 kb on + strand at 463.825 kb on + strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.826 kb on - strand at 463.841 kb on - strand at 463.841 kb on - strand at 463.869 kb on - strand at 463.890 kb on - strand at 463.968 kb on + strand at 463.969 kb on - strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.973 kb on + strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.974 kb on - strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.975 kb on + strand at 463.976 kb on - strand at 463.976 kb on - strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.977 kb on + strand at 463.978 kb on - strand at 463.978 kb on - strand at 464.052 kb on - strand at 464.052 kb on - strand at 464.052 kb on - strand at 464.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 460,503 + DZA65_RS02085 0.22 -0.0 460,536 + DZA65_RS02085 0.25 +0.1 460,812 + DZA65_RS02085 0.48 -0.5 460,813 - DZA65_RS02085 0.48 -0.1 460,907 + DZA65_RS02085 0.56 -0.8 460,908 - DZA65_RS02085 0.56 -1.4 460,908 - DZA65_RS02085 0.56 -0.3 460,978 - DZA65_RS02085 0.61 +0.3 460,978 - DZA65_RS02085 0.61 +0.5 460,986 + DZA65_RS02085 0.62 -0.3 460,987 - DZA65_RS02085 0.62 -0.3 461,083 - DZA65_RS02085 0.70 -0.5 461,083 - DZA65_RS02085 0.70 -1.7 461,105 - DZA65_RS02085 0.72 +0.5 461,112 + DZA65_RS02085 0.72 +0.5 461,131 + DZA65_RS02085 0.74 +0.4 461,134 - DZA65_RS02085 0.74 +1.4 461,150 - DZA65_RS02085 0.76 +0.7 461,166 + -0.1 461,274 - DZA65_RS02085 0.86 +0.5 461,275 + DZA65_RS02085 0.86 -0.8 461,279 - DZA65_RS02085 0.86 +0.4 461,281 + DZA65_RS02085 0.86 -0.3 461,282 - DZA65_RS02085 0.86 -0.5 461,302 - DZA65_RS02085 0.88 +1.2 461,305 - DZA65_RS02085 0.88 +0.3 461,338 + -2.5 461,390 - -0.9 461,434 - +0.4 461,528 - -0.8 461,528 - -0.7 461,632 + -1.4 461,751 - DZA65_RS02090 0.16 -0.5 461,895 + DZA65_RS02090 0.25 -0.3 461,896 - DZA65_RS02090 0.25 -0.6 461,904 - DZA65_RS02090 0.25 +0.7 461,931 - DZA65_RS02090 0.27 -1.1 462,262 + DZA65_RS02090 0.47 -1.3 462,262 + DZA65_RS02090 0.47 -1.1 462,263 - DZA65_RS02090 0.47 +0.0 462,300 - DZA65_RS02090 0.50 +0.9 462,303 + DZA65_RS02090 0.50 +0.2 462,453 - +1.9 462,453 - DZA65_RS02090 0.59 +0.1 462,453 - DZA65_RS02090 0.59 +0.5 462,453 - DZA65_RS02090 0.59 +1.3 462,453 - DZA65_RS02090 0.59 -0.2 462,489 + DZA65_RS02090 0.61 -0.8 462,492 + DZA65_RS02090 0.62 +0.5 462,493 - DZA65_RS02090 0.62 +0.4 462,621 + DZA65_RS02090 0.69 -0.3 462,678 - DZA65_RS02090 0.73 +0.0 462,679 + DZA65_RS02090 0.73 +2.3 463,000 + -1.1 463,025 + -0.9 463,026 - -0.6 463,252 - +0.7 463,401 + DZA65_RS02095 0.70 -0.1 463,402 - +1.9 463,402 - DZA65_RS02095 0.70 +0.3 463,402 - DZA65_RS02095 0.70 +0.3 463,402 - DZA65_RS02095 0.70 +0.2 463,488 - +0.5 463,488 - +0.4 463,488 - -0.1 463,491 + -0.9 463,491 + +0.9 463,491 + -1.3 463,492 - -1.2 463,492 - +0.1 463,501 + -0.1 463,501 + +0.2 463,502 - +1.3 463,502 - +0.9 463,516 + -0.1 463,519 + +0.8 463,519 + -1.2 463,520 - +0.9 463,520 - +1.5 463,523 + +0.4 463,523 + -0.4 463,523 + +0.2 463,523 + -0.3 463,523 + +0.3 463,523 + +0.5 463,524 - -1.5 463,524 - -0.2 463,524 - +0.8 463,524 - -0.1 463,524 - +0.1 463,524 - -0.1 463,542 - -0.1 463,542 - -0.6 463,542 - -0.6 463,542 - +0.4 463,544 + +0.5 463,548 + +0.1 463,549 - -0.1 463,549 - -0.1 463,549 - +0.5 463,560 + -0.3 463,560 + -0.3 463,560 + -0.7 463,560 + +0.5 463,561 - -1.1 463,566 + -0.7 463,566 + -0.6 463,566 + -0.7 463,566 + +0.6 463,566 + -0.4 463,566 + +0.8 463,566 + +0.5 463,566 + -1.1 463,566 + -0.8 463,566 + -1.1 463,567 - -1.3 463,567 - -0.3 463,567 - +0.1 463,570 + -0.5 463,570 + -0.3 463,570 + +0.6 463,570 + -1.7 463,570 + -1.1 463,570 + +0.1 463,570 + -0.6 463,570 + +1.3 463,570 + -0.4 463,571 - -1.1 463,571 - +1.3 463,571 - -1.1 463,571 - -0.1 463,685 + DZA65_RS02100 0.46 -0.3 463,686 - DZA65_RS02100 0.47 -0.8 463,686 - DZA65_RS02100 0.47 +0.2 463,762 + DZA65_RS02100 0.75 -0.9 463,825 + +0.1 463,825 + -0.3 463,825 + -0.1 463,825 + -0.8 463,825 + -0.2 463,826 - -0.1 463,826 - +1.5 463,826 - -2.0 463,826 - -0.5 463,826 - -2.6 463,841 - -1.1 463,841 - -0.8 463,869 - -0.7 463,890 - -0.1 463,968 + -0.6 463,969 - +0.3 463,973 + -0.4 463,973 + -0.3 463,973 + -0.2 463,973 + +0.8 463,973 + -0.2 463,973 + +0.0 463,973 + -0.1 463,973 + -0.4 463,974 - +1.8 463,974 - +0.9 463,974 - -0.3 463,974 - +0.2 463,974 - +0.9 463,975 + -1.0 463,975 + -0.8 463,975 + -0.9 463,975 + +0.7 463,975 + +1.1 463,976 - +1.5 463,976 - -0.2 463,977 + -0.4 463,977 + -0.9 463,977 + +0.3 463,977 + +2.3 463,977 + +0.8 463,977 + +1.1 463,978 - -0.3 463,978 - +0.4 464,052 - +0.1 464,052 - +1.0 464,052 - +0.3 464,052 - -1.3
Or see this region's nucleotide sequence