Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01865 and DZA65_RS01870 are separated by 590 nucleotides DZA65_RS01870 and DZA65_RS01875 are separated by 124 nucleotides DZA65_RS01875 and DZA65_RS01880 are separated by 98 nucleotides
DZA65_RS01865: DZA65_RS01865 - HAMP domain-containing protein, at 408,986 to 410,662
_RS01865
DZA65_RS01870: DZA65_RS01870 - YhbP family protein, at 411,253 to 411,705
_RS01870
DZA65_RS01875: DZA65_RS01875 - anaerobic ribonucleoside-triphosphate reductase-activating protein, at 411,830 to 412,294
_RS01875
DZA65_RS01880: DZA65_RS01880 - anaerobic ribonucleoside-triphosphate reductase, at 412,393 to 414,531
_RS01880
Position (kb) 411
412 Strain fitness (log2 ratio) -2
-1
0
1 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.295 kb on + strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.296 kb on - strand, within DZA65_RS01865 at 410.315 kb on + strand, within DZA65_RS01865 at 410.316 kb on - strand, within DZA65_RS01865 at 410.316 kb on - strand, within DZA65_RS01865 at 410.316 kb on - strand, within DZA65_RS01865 at 410.316 kb on - strand, within DZA65_RS01865 at 410.345 kb on + strand, within DZA65_RS01865 at 410.345 kb on + strand, within DZA65_RS01865 at 410.345 kb on + strand, within DZA65_RS01865 at 410.345 kb on + strand, within DZA65_RS01865 at 410.345 kb on + strand, within DZA65_RS01865 at 410.345 kb on + strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.346 kb on - strand, within DZA65_RS01865 at 410.471 kb on + strand, within DZA65_RS01865 at 410.471 kb on + strand, within DZA65_RS01865 at 410.471 kb on + strand, within DZA65_RS01865 at 410.471 kb on + strand, within DZA65_RS01865 at 410.471 kb on + strand, within DZA65_RS01865 at 410.471 kb on + strand, within DZA65_RS01865 at 410.472 kb on - strand, within DZA65_RS01865 at 410.472 kb on - strand, within DZA65_RS01865 at 410.472 kb on - strand, within DZA65_RS01865 at 410.473 kb on + strand, within DZA65_RS01865 at 410.473 kb on + strand, within DZA65_RS01865 at 410.574 kb on + strand at 410.575 kb on - strand at 410.575 kb on - strand at 410.575 kb on - strand at 410.612 kb on - strand at 410.615 kb on + strand at 410.616 kb on - strand at 410.706 kb on + strand at 410.706 kb on + strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.707 kb on - strand at 410.724 kb on + strand at 410.725 kb on - strand at 410.725 kb on - strand at 410.738 kb on + strand at 410.738 kb on + strand at 410.738 kb on + strand at 410.738 kb on + strand at 410.738 kb on + strand at 410.739 kb on - strand at 410.739 kb on - strand at 410.760 kb on + strand at 410.776 kb on + strand at 410.776 kb on + strand at 410.777 kb on - strand at 410.779 kb on - strand at 410.817 kb on + strand at 410.836 kb on + strand at 410.847 kb on + strand at 410.847 kb on + strand at 410.847 kb on + strand at 410.847 kb on + strand at 410.848 kb on - strand at 410.848 kb on - strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.849 kb on + strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.850 kb on - strand at 410.851 kb on + strand at 410.851 kb on + strand at 410.852 kb on - strand at 410.852 kb on - strand at 410.852 kb on - strand at 410.852 kb on - strand at 410.874 kb on + strand at 410.874 kb on + strand at 410.874 kb on + strand at 410.874 kb on + strand at 410.874 kb on + strand at 410.874 kb on + strand at 410.875 kb on - strand at 410.875 kb on - strand at 410.880 kb on - strand at 410.880 kb on - strand at 410.880 kb on - strand at 410.928 kb on - strand at 410.961 kb on + strand at 410.962 kb on - strand at 410.970 kb on - strand at 411.027 kb on - strand at 411.046 kb on + strand at 411.047 kb on - strand at 411.047 kb on - strand at 411.155 kb on + strand at 411.177 kb on + strand at 411.177 kb on + strand at 411.177 kb on + strand at 411.177 kb on + strand at 411.177 kb on + strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.178 kb on - strand at 411.227 kb on - strand at 411.267 kb on + strand at 411.268 kb on - strand at 411.289 kb on + strand at 411.290 kb on - strand at 411.341 kb on + strand, within DZA65_RS01870 at 411.341 kb on + strand, within DZA65_RS01870 at 411.341 kb on + strand, within DZA65_RS01870 at 411.341 kb on + strand, within DZA65_RS01870 at 411.342 kb on - strand, within DZA65_RS01870 at 411.342 kb on - strand, within DZA65_RS01870 at 411.351 kb on + strand, within DZA65_RS01870 at 411.362 kb on - strand, within DZA65_RS01870 at 411.362 kb on - strand, within DZA65_RS01870 at 411.362 kb on - strand, within DZA65_RS01870 at 411.391 kb on + strand, within DZA65_RS01870 at 411.391 kb on + strand, within DZA65_RS01870 at 411.562 kb on + strand, within DZA65_RS01870 at 411.563 kb on - strand, within DZA65_RS01870 at 411.563 kb on - strand, within DZA65_RS01870 at 411.564 kb on + strand, within DZA65_RS01870 at 411.565 kb on - strand, within DZA65_RS01870 at 411.565 kb on - strand, within DZA65_RS01870 at 411.565 kb on - strand, within DZA65_RS01870 at 411.684 kb on + strand at 411.684 kb on + strand at 411.684 kb on + strand at 411.735 kb on - strand at 411.735 kb on - strand at 411.735 kb on - strand at 411.770 kb on + strand at 411.770 kb on + strand at 411.771 kb on - strand at 411.771 kb on - strand at 411.771 kb on - strand at 411.771 kb on - strand at 411.771 kb on - strand at 412.194 kb on + strand, within DZA65_RS01875 at 412.194 kb on + strand, within DZA65_RS01875 at 412.194 kb on + strand, within DZA65_RS01875 at 412.194 kb on + strand, within DZA65_RS01875 at 412.194 kb on + strand, within DZA65_RS01875 at 412.194 kb on + strand, within DZA65_RS01875 at 412.195 kb on - strand, within DZA65_RS01875 at 412.195 kb on - strand, within DZA65_RS01875 at 412.195 kb on - strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.237 kb on + strand, within DZA65_RS01875 at 412.238 kb on - strand, within DZA65_RS01875 at 412.238 kb on - strand, within DZA65_RS01875 at 412.238 kb on - strand, within DZA65_RS01875 at 412.278 kb on + strand at 412.278 kb on + strand at 412.278 kb on + strand at 412.278 kb on + strand at 412.278 kb on + strand at 412.278 kb on + strand at 412.279 kb on - strand at 412.279 kb on - strand at 412.279 kb on - strand at 412.279 kb on - strand at 412.287 kb on + strand at 412.287 kb on + strand at 412.287 kb on + strand at 412.287 kb on + strand at 412.287 kb on + strand at 412.287 kb on + strand at 412.287 kb on + strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.288 kb on - strand at 412.294 kb on + strand at 412.551 kb on + strand at 412.551 kb on + strand at 412.552 kb on - strand at 412.599 kb on - strand at 412.599 kb on - strand at 412.629 kb on - strand at 412.631 kb on + strand, within DZA65_RS01880 at 412.632 kb on - strand, within DZA65_RS01880 at 412.646 kb on + strand, within DZA65_RS01880 at 412.646 kb on + strand, within DZA65_RS01880 at 412.646 kb on + strand, within DZA65_RS01880 at 412.646 kb on + strand, within DZA65_RS01880 at 412.646 kb on + strand, within DZA65_RS01880 at 412.652 kb on + strand, within DZA65_RS01880 at 412.653 kb on - strand, within DZA65_RS01880 at 412.653 kb on - strand, within DZA65_RS01880 at 412.653 kb on - strand, within DZA65_RS01880 at 412.653 kb on - strand, within DZA65_RS01880 at 412.660 kb on + strand, within DZA65_RS01880 at 412.661 kb on - strand, within DZA65_RS01880 at 412.661 kb on - strand, within DZA65_RS01880 at 412.661 kb on - strand, within DZA65_RS01880 at 412.661 kb on - strand, within DZA65_RS01880 at 412.701 kb on - strand, within DZA65_RS01880
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 410,295 + DZA65_RS01865 0.78 -0.4 410,295 + DZA65_RS01865 0.78 +0.4 410,295 + DZA65_RS01865 0.78 +1.0 410,295 + +0.6 410,295 + DZA65_RS01865 0.78 +0.1 410,295 + DZA65_RS01865 0.78 +0.6 410,295 + DZA65_RS01865 0.78 -1.0 410,295 + DZA65_RS01865 0.78 +1.6 410,295 + DZA65_RS01865 0.78 +0.4 410,295 + DZA65_RS01865 0.78 +0.5 410,296 - DZA65_RS01865 0.78 +0.4 410,296 - DZA65_RS01865 0.78 +0.3 410,296 - DZA65_RS01865 0.78 -0.6 410,296 - DZA65_RS01865 0.78 -1.0 410,296 - DZA65_RS01865 0.78 +0.4 410,296 - DZA65_RS01865 0.78 +0.1 410,296 - DZA65_RS01865 0.78 -0.3 410,315 + DZA65_RS01865 0.79 -0.7 410,316 - DZA65_RS01865 0.79 +1.1 410,316 - DZA65_RS01865 0.79 -0.1 410,316 - DZA65_RS01865 0.79 -0.4 410,316 - DZA65_RS01865 0.79 -0.1 410,345 + DZA65_RS01865 0.81 -0.5 410,345 + DZA65_RS01865 0.81 +1.2 410,345 + DZA65_RS01865 0.81 +0.3 410,345 + DZA65_RS01865 0.81 +0.7 410,345 + DZA65_RS01865 0.81 +0.6 410,345 + DZA65_RS01865 0.81 +1.3 410,346 - DZA65_RS01865 0.81 -0.9 410,346 - DZA65_RS01865 0.81 -2.3 410,346 - DZA65_RS01865 0.81 -1.6 410,346 - DZA65_RS01865 0.81 -0.7 410,346 - DZA65_RS01865 0.81 -0.2 410,346 - DZA65_RS01865 0.81 +0.1 410,346 - DZA65_RS01865 0.81 -0.0 410,471 + DZA65_RS01865 0.89 -0.2 410,471 + DZA65_RS01865 0.89 -0.4 410,471 + DZA65_RS01865 0.89 +0.7 410,471 + DZA65_RS01865 0.89 +0.2 410,471 + DZA65_RS01865 0.89 -0.0 410,471 + DZA65_RS01865 0.89 +1.1 410,472 - DZA65_RS01865 0.89 +0.2 410,472 - DZA65_RS01865 0.89 +0.1 410,472 - DZA65_RS01865 0.89 +1.6 410,473 + DZA65_RS01865 0.89 -0.0 410,473 + DZA65_RS01865 0.89 -0.3 410,574 + -0.0 410,575 - -0.4 410,575 - +1.4 410,575 - -0.4 410,612 - -0.9 410,615 + +1.0 410,616 - -0.0 410,706 + +1.6 410,706 + -0.4 410,707 - -0.3 410,707 - -0.0 410,707 - -0.7 410,707 - +0.5 410,707 - +0.7 410,707 - -0.0 410,707 - +0.6 410,707 - +0.3 410,724 + +0.1 410,725 - -1.1 410,725 - +1.3 410,738 + -0.4 410,738 + -0.0 410,738 + +0.7 410,738 + -0.3 410,738 + +0.6 410,739 - -0.4 410,739 - +0.6 410,760 + +1.0 410,776 + -0.5 410,776 + -0.9 410,777 - +0.2 410,779 - +0.8 410,817 + -1.6 410,836 + -1.3 410,847 + +1.6 410,847 + -0.9 410,847 + +0.4 410,847 + -0.3 410,848 - +0.6 410,848 - +0.8 410,849 + +0.0 410,849 + -1.0 410,849 + +0.8 410,849 + -0.3 410,849 + +0.1 410,849 + -0.1 410,849 + +1.4 410,849 + -0.4 410,849 + -0.9 410,849 + -0.8 410,849 + -0.8 410,850 - -0.0 410,850 - -0.0 410,850 - -1.4 410,850 - +0.3 410,850 - +0.8 410,850 - +0.6 410,850 - -0.3 410,850 - -0.1 410,850 - +0.1 410,850 - +0.3 410,850 - +0.2 410,850 - +1.0 410,850 - -0.2 410,850 - +0.4 410,850 - +1.4 410,850 - -0.7 410,850 - +0.9 410,850 - -0.7 410,850 - -0.3 410,850 - +0.4 410,850 - -1.1 410,851 + +0.3 410,851 + -1.5 410,852 - -0.8 410,852 - -1.4 410,852 - -0.4 410,852 - -0.4 410,874 + +0.5 410,874 + +0.8 410,874 + -0.2 410,874 + -0.4 410,874 + -0.2 410,874 + +1.2 410,875 - -1.3 410,875 - -0.3 410,880 - -0.3 410,880 - +0.3 410,880 - -1.0 410,928 - -0.0 410,961 + -1.4 410,962 - -0.6 410,970 - -0.8 411,027 - -1.4 411,046 + -0.2 411,047 - +0.4 411,047 - -0.8 411,155 + -0.9 411,177 + -0.0 411,177 + +0.5 411,177 + +0.4 411,177 + +0.9 411,177 + -0.8 411,178 - -0.2 411,178 - -0.0 411,178 - -1.3 411,178 - -0.6 411,178 - -0.0 411,178 - +0.1 411,178 - +0.8 411,178 - +0.7 411,227 - -0.5 411,267 + +1.4 411,268 - -1.4 411,289 + +0.3 411,290 - +0.6 411,341 + DZA65_RS01870 0.19 -1.4 411,341 + DZA65_RS01870 0.19 -0.3 411,341 + DZA65_RS01870 0.19 -0.8 411,341 + DZA65_RS01870 0.19 -0.1 411,342 - DZA65_RS01870 0.20 +0.2 411,342 - DZA65_RS01870 0.20 -1.4 411,351 + DZA65_RS01870 0.22 -0.3 411,362 - DZA65_RS01870 0.24 -0.0 411,362 - DZA65_RS01870 0.24 -0.4 411,362 - DZA65_RS01870 0.24 -0.3 411,391 + DZA65_RS01870 0.30 -0.6 411,391 + DZA65_RS01870 0.30 -0.7 411,562 + DZA65_RS01870 0.68 -0.3 411,563 - DZA65_RS01870 0.68 -0.4 411,563 - DZA65_RS01870 0.68 -1.1 411,564 + DZA65_RS01870 0.69 -1.4 411,565 - DZA65_RS01870 0.69 -0.8 411,565 - DZA65_RS01870 0.69 -0.3 411,565 - DZA65_RS01870 0.69 -0.3 411,684 + -1.5 411,684 + -1.8 411,684 + -0.4 411,735 - -0.5 411,735 - -1.3 411,735 - -2.3 411,770 + -0.6 411,770 + +0.7 411,771 - +0.2 411,771 - -0.2 411,771 - +1.6 411,771 - +0.8 411,771 - -0.8 412,194 + DZA65_RS01875 0.78 +0.4 412,194 + DZA65_RS01875 0.78 +0.1 412,194 + DZA65_RS01875 0.78 +1.6 412,194 + DZA65_RS01875 0.78 +0.9 412,194 + DZA65_RS01875 0.78 -0.7 412,194 + DZA65_RS01875 0.78 -0.9 412,195 - DZA65_RS01875 0.78 +1.1 412,195 - DZA65_RS01875 0.78 +1.3 412,195 - DZA65_RS01875 0.78 -0.3 412,237 + DZA65_RS01875 0.88 +0.6 412,237 + DZA65_RS01875 0.88 +1.0 412,237 + DZA65_RS01875 0.88 +0.1 412,237 + DZA65_RS01875 0.88 -0.9 412,237 + DZA65_RS01875 0.88 +1.6 412,237 + DZA65_RS01875 0.88 -0.8 412,237 + DZA65_RS01875 0.88 +0.9 412,237 + DZA65_RS01875 0.88 -0.7 412,238 - DZA65_RS01875 0.88 -0.7 412,238 - DZA65_RS01875 0.88 -2.0 412,238 - DZA65_RS01875 0.88 -1.8 412,278 + -0.8 412,278 + +0.4 412,278 + +0.6 412,278 + +0.1 412,278 + +0.0 412,278 + -0.4 412,279 - +0.1 412,279 - -0.4 412,279 - -1.4 412,279 - -0.8 412,287 + -0.0 412,287 + -0.8 412,287 + -0.6 412,287 + -0.9 412,287 + +0.1 412,287 + -0.4 412,287 + +1.0 412,288 - +0.5 412,288 - -0.6 412,288 - +0.3 412,288 - -0.0 412,288 - +0.1 412,288 - -0.6 412,288 - -0.3 412,288 - -0.8 412,294 + -0.2 412,551 + +0.3 412,551 + +1.0 412,552 - -0.0 412,599 - -0.5 412,599 - -0.3 412,629 - +0.6 412,631 + DZA65_RS01880 0.11 -1.4 412,632 - DZA65_RS01880 0.11 -1.3 412,646 + DZA65_RS01880 0.12 +1.6 412,646 + DZA65_RS01880 0.12 +0.1 412,646 + DZA65_RS01880 0.12 +0.4 412,646 + DZA65_RS01880 0.12 -0.4 412,646 + DZA65_RS01880 0.12 -0.4 412,652 + DZA65_RS01880 0.12 -2.5 412,653 - DZA65_RS01880 0.12 -0.7 412,653 - DZA65_RS01880 0.12 -0.4 412,653 - DZA65_RS01880 0.12 +0.0 412,653 - DZA65_RS01880 0.12 +0.0 412,660 + DZA65_RS01880 0.12 +1.4 412,661 - DZA65_RS01880 0.13 +1.1 412,661 - DZA65_RS01880 0.13 -1.2 412,661 - DZA65_RS01880 0.13 -0.8 412,661 - DZA65_RS01880 0.13 +0.2 412,701 - DZA65_RS01880 0.14 -0.9
Or see this region's nucleotide sequence