Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01850 and DZA65_RS01855 are separated by 196 nucleotides DZA65_RS01855 and DZA65_RS22780 are separated by 230 nucleotides DZA65_RS22780 and DZA65_RS01860 are separated by 40 nucleotides
DZA65_RS01850: DZA65_RS01850 - carbohydrate porin, at 404,026 to 405,639
_RS01850
DZA65_RS01855: DZA65_RS01855 - aminoimidazole riboside kinase, at 405,836 to 406,759
_RS01855
DZA65_RS22780: DZA65_RS22780 - hypothetical protein, at 406,990 to 407,253
_RS22780
DZA65_RS01860: DZA65_RS01860 - type I-E CRISPR-associated protein Cse1/CasA, at 407,294 to 408,829
_RS01860
Position (kb) 405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 404.852 kb on + strand, within DZA65_RS01850 at 404.852 kb on + strand, within DZA65_RS01850 at 404.852 kb on + strand, within DZA65_RS01850 at 404.852 kb on + strand, within DZA65_RS01850 at 404.853 kb on - strand, within DZA65_RS01850 at 404.853 kb on - strand, within DZA65_RS01850 at 404.853 kb on - strand, within DZA65_RS01850 at 404.853 kb on - strand, within DZA65_RS01850 at 404.853 kb on - strand, within DZA65_RS01850 at 404.896 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.047 kb on + strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.048 kb on - strand, within DZA65_RS01850 at 405.137 kb on + strand, within DZA65_RS01850 at 405.137 kb on + strand, within DZA65_RS01850 at 405.137 kb on + strand, within DZA65_RS01850 at 405.137 kb on + strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.138 kb on - strand, within DZA65_RS01850 at 405.170 kb on + strand, within DZA65_RS01850 at 405.171 kb on - strand, within DZA65_RS01850 at 405.171 kb on - strand, within DZA65_RS01850 at 405.263 kb on + strand, within DZA65_RS01850 at 405.264 kb on - strand, within DZA65_RS01850 at 405.264 kb on - strand, within DZA65_RS01850 at 405.264 kb on - strand, within DZA65_RS01850 at 405.564 kb on + strand at 405.565 kb on - strand at 405.626 kb on + strand at 405.627 kb on - strand at 405.637 kb on + strand at 405.717 kb on + strand at 405.717 kb on + strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.718 kb on - strand at 405.765 kb on + strand at 405.765 kb on + strand at 405.766 kb on - strand at 405.766 kb on - strand at 405.766 kb on - strand at 405.766 kb on - strand at 405.807 kb on + strand at 405.808 kb on - strand at 405.808 kb on - strand at 405.838 kb on - strand at 405.838 kb on - strand at 405.957 kb on + strand, within DZA65_RS01855 at 405.957 kb on + strand, within DZA65_RS01855 at 405.958 kb on - strand, within DZA65_RS01855 at 405.958 kb on - strand, within DZA65_RS01855 at 405.965 kb on - strand, within DZA65_RS01855 at 406.332 kb on - strand, within DZA65_RS01855 at 406.418 kb on + strand, within DZA65_RS01855 at 406.418 kb on + strand, within DZA65_RS01855 at 406.418 kb on + strand, within DZA65_RS01855 at 406.418 kb on + strand, within DZA65_RS01855 at 406.543 kb on - strand, within DZA65_RS01855 at 406.543 kb on - strand, within DZA65_RS01855 at 406.543 kb on - strand, within DZA65_RS01855 at 406.543 kb on - strand, within DZA65_RS01855 at 406.543 kb on - strand, within DZA65_RS01855 at 406.739 kb on + strand at 406.745 kb on + strand at 406.745 kb on + strand at 406.746 kb on - strand at 406.746 kb on - strand at 406.750 kb on + strand at 406.751 kb on - strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.759 kb on + strand at 406.760 kb on - strand at 406.760 kb on - strand at 406.760 kb on - strand at 406.763 kb on + strand at 406.763 kb on + strand at 406.763 kb on + strand at 406.763 kb on + strand at 406.763 kb on + strand at 406.763 kb on + strand at 406.764 kb on - strand at 406.764 kb on - strand at 406.764 kb on - strand at 406.764 kb on - strand at 406.764 kb on - strand at 406.764 kb on - strand at 406.787 kb on + strand at 406.796 kb on + strand at 406.797 kb on - strand at 406.800 kb on + strand at 406.800 kb on + strand at 406.800 kb on + strand at 406.800 kb on + strand at 406.800 kb on + strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.801 kb on - strand at 406.926 kb on + strand at 406.933 kb on + strand at 406.933 kb on + strand at 406.934 kb on - strand at 406.934 kb on - strand at 406.934 kb on - strand at 406.934 kb on - strand at 406.934 kb on - strand at 406.959 kb on - strand at 406.974 kb on + strand at 406.974 kb on + strand at 406.987 kb on + strand at 406.987 kb on + strand at 406.987 kb on + strand at 406.987 kb on + strand at 406.987 kb on + strand at 406.987 kb on + strand at 406.988 kb on - strand at 406.988 kb on - strand at 406.988 kb on - strand at 406.988 kb on - strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.991 kb on + strand at 406.992 kb on - strand at 406.992 kb on - strand at 406.992 kb on - strand at 406.992 kb on - strand at 406.992 kb on - strand at 406.994 kb on + strand at 406.994 kb on + strand at 406.995 kb on - strand at 406.995 kb on - strand at 406.995 kb on - strand at 406.995 kb on - strand at 406.997 kb on + strand at 406.997 kb on + strand at 406.997 kb on + strand at 406.997 kb on + strand at 406.997 kb on + strand at 406.998 kb on - strand at 406.998 kb on - strand at 406.998 kb on - strand at 406.998 kb on - strand at 406.998 kb on - strand at 406.998 kb on - strand at 407.010 kb on + strand at 407.010 kb on + strand at 407.011 kb on - strand at 407.011 kb on - strand at 407.021 kb on + strand, within DZA65_RS22780 at 407.022 kb on - strand, within DZA65_RS22780 at 407.068 kb on - strand, within DZA65_RS22780 at 407.077 kb on - strand, within DZA65_RS22780 at 407.080 kb on - strand, within DZA65_RS22780 at 407.109 kb on - strand, within DZA65_RS22780 at 407.124 kb on + strand, within DZA65_RS22780 at 407.124 kb on + strand, within DZA65_RS22780 at 407.125 kb on - strand, within DZA65_RS22780 at 407.136 kb on - strand, within DZA65_RS22780 at 407.136 kb on - strand, within DZA65_RS22780 at 407.136 kb on - strand, within DZA65_RS22780 at 407.136 kb on - strand, within DZA65_RS22780 at 407.276 kb on + strand at 407.277 kb on - strand at 407.287 kb on + strand at 407.287 kb on + strand at 407.287 kb on + strand at 407.287 kb on + strand at 407.288 kb on - strand at 407.288 kb on - strand at 407.288 kb on - strand at 407.288 kb on - strand at 407.356 kb on + strand at 407.357 kb on - strand at 407.357 kb on - strand at 407.357 kb on - strand at 407.465 kb on + strand, within DZA65_RS01860 at 407.466 kb on - strand, within DZA65_RS01860 at 407.678 kb on - strand, within DZA65_RS01860 at 407.678 kb on - strand, within DZA65_RS01860 at 407.744 kb on + strand, within DZA65_RS01860 at 407.744 kb on + strand, within DZA65_RS01860 at 407.745 kb on - strand, within DZA65_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 404,852 + DZA65_RS01850 0.51 -0.0 404,852 + DZA65_RS01850 0.51 +0.6 404,852 + DZA65_RS01850 0.51 -1.1 404,852 + DZA65_RS01850 0.51 -0.1 404,853 - DZA65_RS01850 0.51 +0.7 404,853 - DZA65_RS01850 0.51 -0.2 404,853 - DZA65_RS01850 0.51 +2.0 404,853 - DZA65_RS01850 0.51 -0.4 404,853 - DZA65_RS01850 0.51 +0.0 404,896 + DZA65_RS01850 0.54 +0.3 405,047 + DZA65_RS01850 0.63 +0.1 405,047 + DZA65_RS01850 0.63 -0.9 405,047 + DZA65_RS01850 0.63 -0.2 405,047 + DZA65_RS01850 0.63 -0.2 405,047 + DZA65_RS01850 0.63 +0.6 405,047 + DZA65_RS01850 0.63 +0.1 405,047 + DZA65_RS01850 0.63 -1.4 405,048 - DZA65_RS01850 0.63 +0.1 405,048 - DZA65_RS01850 0.63 +0.1 405,048 - DZA65_RS01850 0.63 -0.3 405,048 - DZA65_RS01850 0.63 -0.7 405,048 - DZA65_RS01850 0.63 -1.3 405,048 - DZA65_RS01850 0.63 -2.1 405,048 - DZA65_RS01850 0.63 -0.3 405,048 - DZA65_RS01850 0.63 +1.0 405,137 + DZA65_RS01850 0.69 -0.6 405,137 + DZA65_RS01850 0.69 -0.3 405,137 + DZA65_RS01850 0.69 +0.1 405,137 + DZA65_RS01850 0.69 +0.6 405,138 - DZA65_RS01850 0.69 -1.6 405,138 - DZA65_RS01850 0.69 -1.8 405,138 - DZA65_RS01850 0.69 -0.0 405,138 - DZA65_RS01850 0.69 +2.0 405,138 - DZA65_RS01850 0.69 -0.4 405,138 - DZA65_RS01850 0.69 -0.8 405,138 - DZA65_RS01850 0.69 -0.3 405,138 - DZA65_RS01850 0.69 -1.3 405,138 - DZA65_RS01850 0.69 +1.0 405,138 - DZA65_RS01850 0.69 -1.1 405,170 + DZA65_RS01850 0.71 -1.4 405,171 - DZA65_RS01850 0.71 -0.2 405,171 - DZA65_RS01850 0.71 +0.5 405,263 + DZA65_RS01850 0.77 -1.1 405,264 - DZA65_RS01850 0.77 -0.5 405,264 - DZA65_RS01850 0.77 -0.8 405,264 - DZA65_RS01850 0.77 +0.2 405,564 + -0.1 405,565 - +0.8 405,626 + +0.8 405,627 - +1.2 405,637 + +0.4 405,717 + -0.4 405,717 + -0.1 405,718 - -0.2 405,718 - +0.1 405,718 - -0.1 405,765 + -0.4 405,765 + +0.6 405,766 - -0.9 405,766 - -0.8 405,766 - +0.7 405,766 - -0.6 405,807 + -1.3 405,808 - -0.3 405,808 - +0.3 405,838 - +0.5 405,838 - -0.2 405,957 + DZA65_RS01855 0.13 -1.8 405,957 + DZA65_RS01855 0.13 -2.8 405,958 - DZA65_RS01855 0.13 -2.3 405,958 - DZA65_RS01855 0.13 -0.1 405,965 - DZA65_RS01855 0.14 +0.1 406,332 - DZA65_RS01855 0.54 +0.3 406,418 + DZA65_RS01855 0.63 -0.0 406,418 + DZA65_RS01855 0.63 -0.8 406,418 + DZA65_RS01855 0.63 +0.1 406,418 + DZA65_RS01855 0.63 +0.8 406,543 - DZA65_RS01855 0.77 -0.7 406,543 - DZA65_RS01855 0.77 -0.8 406,543 - DZA65_RS01855 0.77 -1.0 406,543 - DZA65_RS01855 0.77 -0.8 406,543 - DZA65_RS01855 0.77 +0.4 406,739 + -1.4 406,745 + +1.3 406,745 + -0.7 406,746 - -0.0 406,746 - -1.6 406,750 + +0.1 406,751 - +0.7 406,759 + -0.2 406,759 + +0.7 406,759 + +1.0 406,759 + -0.3 406,759 + -0.4 406,759 + -1.6 406,759 + +1.0 406,759 + +0.6 406,759 + -1.3 406,759 + +1.6 406,759 + -1.6 406,759 + +0.3 406,759 + +1.0 406,760 - -0.1 406,760 - -0.6 406,760 - +0.6 406,763 + -1.9 406,763 + +0.2 406,763 + -0.5 406,763 + +0.2 406,763 + -0.3 406,763 + +0.6 406,764 - -1.5 406,764 - -0.2 406,764 - -0.0 406,764 - -0.9 406,764 - +0.6 406,764 - +0.4 406,787 + +1.2 406,796 + +0.3 406,797 - -2.1 406,800 + -0.3 406,800 + -0.2 406,800 + -2.0 406,800 + -0.1 406,800 + -0.2 406,801 - -0.3 406,801 - -0.3 406,801 - +0.4 406,801 - +0.4 406,801 - +0.2 406,801 - -0.5 406,801 - +1.1 406,801 - +0.2 406,801 - +0.7 406,926 + +0.5 406,933 + +0.2 406,933 + +1.1 406,934 - -0.8 406,934 - -1.2 406,934 - +0.6 406,934 - +1.2 406,934 - -0.9 406,959 - -0.0 406,974 + +1.1 406,974 + -0.8 406,987 + -1.8 406,987 + -0.7 406,987 + +1.4 406,987 + +0.4 406,987 + +1.6 406,987 + +1.1 406,988 - -0.0 406,988 - -1.4 406,988 - -0.8 406,988 - -0.6 406,991 + -1.1 406,991 + -1.3 406,991 + +1.1 406,991 + -0.3 406,991 + +0.1 406,991 + -0.8 406,991 + +0.4 406,991 + +1.1 406,991 + -0.1 406,992 - +1.4 406,992 - -0.4 406,992 - +1.6 406,992 - -0.0 406,992 - -0.3 406,994 + +0.1 406,994 + +0.6 406,995 - +0.9 406,995 - -1.0 406,995 - -0.5 406,995 - -0.3 406,997 + +0.4 406,997 + +0.0 406,997 + -0.6 406,997 + -0.4 406,997 + +0.1 406,998 - -1.3 406,998 - -0.0 406,998 - +0.2 406,998 - -0.6 406,998 - +0.2 406,998 - -0.7 407,010 + +1.6 407,010 + +1.6 407,011 - +0.3 407,011 - -2.3 407,021 + DZA65_RS22780 0.12 -0.9 407,022 - DZA65_RS22780 0.12 +0.2 407,068 - DZA65_RS22780 0.30 +1.0 407,077 - DZA65_RS22780 0.33 -0.7 407,080 - DZA65_RS22780 0.34 +0.1 407,109 - DZA65_RS22780 0.45 -0.8 407,124 + DZA65_RS22780 0.51 -1.6 407,124 + DZA65_RS22780 0.51 +1.5 407,125 - DZA65_RS22780 0.51 -0.6 407,136 - DZA65_RS22780 0.55 -0.2 407,136 - DZA65_RS22780 0.55 +2.0 407,136 - DZA65_RS22780 0.55 -1.4 407,136 - DZA65_RS22780 0.55 -0.5 407,276 + -1.4 407,277 - +0.6 407,287 + -0.2 407,287 + +0.7 407,287 + -0.0 407,287 + +1.0 407,288 - +0.3 407,288 - +0.7 407,288 - -1.9 407,288 - -0.3 407,356 + +0.2 407,357 - -0.3 407,357 - -1.0 407,357 - -0.8 407,465 + DZA65_RS01860 0.11 +0.8 407,466 - DZA65_RS01860 0.11 +1.1 407,678 - DZA65_RS01860 0.25 -0.6 407,678 - DZA65_RS01860 0.25 -0.7 407,744 + DZA65_RS01860 0.29 +0.1 407,744 + DZA65_RS01860 0.29 -0.1 407,745 - DZA65_RS01860 0.29 -1.9
Or see this region's nucleotide sequence