Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01675

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01665 and DZA65_RS01670 are separated by 10 nucleotidesDZA65_RS01670 and DZA65_RS01675 are separated by 73 nucleotidesDZA65_RS01675 and DZA65_RS01680 overlap by 43 nucleotides DZA65_RS01665: DZA65_RS01665 - divisome-associated lipoprotein YraP, at 363,212 to 363,787 _RS01665 DZA65_RS01670: DZA65_RS01670 - DnaA initiator-associating protein DiaA, at 363,798 to 364,388 _RS01670 DZA65_RS01675: DZA65_RS01675 - YraN family protein, at 364,462 to 364,857 _RS01675 DZA65_RS01680: DZA65_RS01680 - penicillin-binding protein activator, at 364,815 to 366,866 _RS01680 Position (kb) 364 365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 363.549 kb on - strand, within DZA65_RS01665at 363.778 kb on - strandat 363.778 kb on - strandat 363.778 kb on - strandat 363.778 kb on - strandat 363.778 kb on - strandat 363.778 kb on - strandat 363.799 kb on + strandat 363.800 kb on - strandat 363.800 kb on - strandat 363.827 kb on + strandat 363.828 kb on - strandat 363.834 kb on + strandat 363.834 kb on + strandat 363.834 kb on + strandat 363.834 kb on + strandat 363.834 kb on + strandat 363.834 kb on + strandat 363.835 kb on - strandat 363.863 kb on + strand, within DZA65_RS01670at 363.863 kb on + strand, within DZA65_RS01670at 363.864 kb on - strand, within DZA65_RS01670at 363.864 kb on - strand, within DZA65_RS01670at 363.864 kb on - strand, within DZA65_RS01670at 363.864 kb on - strand, within DZA65_RS01670at 363.864 kb on - strand, within DZA65_RS01670at 363.864 kb on - strand, within DZA65_RS01670at 363.955 kb on + strand, within DZA65_RS01670at 364.093 kb on + strand, within DZA65_RS01670at 364.142 kb on + strand, within DZA65_RS01670at 364.151 kb on + strand, within DZA65_RS01670at 364.151 kb on + strand, within DZA65_RS01670at 364.151 kb on + strand, within DZA65_RS01670at 364.152 kb on - strand, within DZA65_RS01670at 364.152 kb on - strand, within DZA65_RS01670at 364.172 kb on + strand, within DZA65_RS01670at 364.172 kb on + strand, within DZA65_RS01670at 364.202 kb on + strand, within DZA65_RS01670at 364.203 kb on - strand, within DZA65_RS01670at 364.203 kb on - strand, within DZA65_RS01670at 364.203 kb on - strand, within DZA65_RS01670at 364.373 kb on + strandat 364.373 kb on + strandat 364.374 kb on - strandat 364.374 kb on - strandat 364.374 kb on - strandat 364.407 kb on + strandat 364.408 kb on - strandat 364.439 kb on + strandat 364.439 kb on + strandat 364.439 kb on + strandat 364.439 kb on + strandat 364.440 kb on - strandat 364.440 kb on - strandat 364.451 kb on + strandat 364.452 kb on - strandat 364.452 kb on - strandat 364.464 kb on - strandat 364.620 kb on + strand, within DZA65_RS01675at 364.620 kb on + strand, within DZA65_RS01675at 364.651 kb on - strand, within DZA65_RS01675at 364.698 kb on + strand, within DZA65_RS01675at 364.699 kb on - strand, within DZA65_RS01675at 364.699 kb on - strand, within DZA65_RS01675at 364.723 kb on + strand, within DZA65_RS01675at 364.866 kb on - strandat 364.896 kb on - strandat 364.896 kb on - strandat 365.005 kb on + strandat 365.005 kb on + strandat 365.006 kb on - strandat 365.006 kb on - strandat 365.079 kb on - strand, within DZA65_RS01680at 365.132 kb on - strand, within DZA65_RS01680at 365.132 kb on - strand, within DZA65_RS01680at 365.150 kb on - strand, within DZA65_RS01680at 365.231 kb on + strand, within DZA65_RS01680at 365.232 kb on - strand, within DZA65_RS01680at 365.232 kb on - strand, within DZA65_RS01680at 365.232 kb on - strand, within DZA65_RS01680at 365.232 kb on - strand, within DZA65_RS01680at 365.232 kb on - strand, within DZA65_RS01680at 365.233 kb on + strand, within DZA65_RS01680at 365.233 kb on + strand, within DZA65_RS01680at 365.233 kb on + strand, within DZA65_RS01680at 365.233 kb on + strand, within DZA65_RS01680at 365.234 kb on - strand, within DZA65_RS01680at 365.234 kb on - strand, within DZA65_RS01680at 365.234 kb on - strandat 365.234 kb on - strand, within DZA65_RS01680at 365.234 kb on - strand, within DZA65_RS01680at 365.234 kb on - strand, within DZA65_RS01680at 365.267 kb on + strand, within DZA65_RS01680at 365.267 kb on + strand, within DZA65_RS01680at 365.267 kb on + strand, within DZA65_RS01680at 365.267 kb on + strand, within DZA65_RS01680at 365.268 kb on - strand, within DZA65_RS01680at 365.268 kb on - strand, within DZA65_RS01680at 365.268 kb on - strand, within DZA65_RS01680at 365.268 kb on - strand, within DZA65_RS01680at 365.404 kb on + strand, within DZA65_RS01680at 365.405 kb on - strand, within DZA65_RS01680at 365.405 kb on - strand, within DZA65_RS01680at 365.591 kb on - strand, within DZA65_RS01680at 365.744 kb on + strand, within DZA65_RS01680at 365.770 kb on + strand, within DZA65_RS01680at 365.771 kb on - strand, within DZA65_RS01680

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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363,549 - DZA65_RS01665 0.59 -1.1
363,778 - -0.7
363,778 - +0.2
363,778 - -0.2
363,778 - +1.9
363,778 - +0.8
363,778 - -0.6
363,799 + -0.7
363,800 - +0.9
363,800 - -0.0
363,827 + -0.0
363,828 - -0.4
363,834 + -0.9
363,834 + +0.5
363,834 + -0.4
363,834 + -0.7
363,834 + -1.0
363,834 + -0.7
363,835 - +0.4
363,863 + DZA65_RS01670 0.11 -0.1
363,863 + DZA65_RS01670 0.11 -0.6
363,864 - DZA65_RS01670 0.11 +0.1
363,864 - DZA65_RS01670 0.11 +1.0
363,864 - DZA65_RS01670 0.11 -0.7
363,864 - DZA65_RS01670 0.11 +0.7
363,864 - DZA65_RS01670 0.11 +0.2
363,864 - DZA65_RS01670 0.11 +0.8
363,955 + DZA65_RS01670 0.27 -0.3
364,093 + DZA65_RS01670 0.50 +0.9
364,142 + DZA65_RS01670 0.58 -0.4
364,151 + DZA65_RS01670 0.60 -2.2
364,151 + DZA65_RS01670 0.60 -0.4
364,151 + DZA65_RS01670 0.60 +0.9
364,152 - DZA65_RS01670 0.60 +3.0
364,152 - DZA65_RS01670 0.60 +0.8
364,172 + DZA65_RS01670 0.63 -1.4
364,172 + DZA65_RS01670 0.63 -0.2
364,202 + DZA65_RS01670 0.68 -0.2
364,203 - DZA65_RS01670 0.69 +0.6
364,203 - DZA65_RS01670 0.69 +0.4
364,203 - DZA65_RS01670 0.69 -0.4
364,373 + +0.8
364,373 + -0.0
364,374 - +1.6
364,374 - -0.4
364,374 - -1.2
364,407 + +1.3
364,408 - +1.2
364,439 + -1.0
364,439 + -0.7
364,439 + +1.0
364,439 + -2.2
364,440 - -0.2
364,440 - -0.9
364,451 + +1.3
364,452 - +0.6
364,452 - +0.3
364,464 - +0.3
364,620 + DZA65_RS01675 0.40 +0.7
364,620 + DZA65_RS01675 0.40 +0.2
364,651 - DZA65_RS01675 0.48 +0.8
364,698 + DZA65_RS01675 0.60 +0.7
364,699 - DZA65_RS01675 0.60 +0.6
364,699 - DZA65_RS01675 0.60 -0.2
364,723 + DZA65_RS01675 0.66 -0.3
364,866 - -2.1
364,896 - +0.7
364,896 - -0.4
365,005 + +1.6
365,005 + -0.6
365,006 - -0.7
365,006 - -0.1
365,079 - DZA65_RS01680 0.13 -1.6
365,132 - DZA65_RS01680 0.15 +0.3
365,132 - DZA65_RS01680 0.15 -0.0
365,150 - DZA65_RS01680 0.16 +0.8
365,231 + DZA65_RS01680 0.20 +2.6
365,232 - DZA65_RS01680 0.20 -0.7
365,232 - DZA65_RS01680 0.20 -1.4
365,232 - DZA65_RS01680 0.20 +0.5
365,232 - DZA65_RS01680 0.20 -0.7
365,232 - DZA65_RS01680 0.20 +1.6
365,233 + DZA65_RS01680 0.20 -0.4
365,233 + DZA65_RS01680 0.20 +0.2
365,233 + DZA65_RS01680 0.20 +0.3
365,233 + DZA65_RS01680 0.20 +1.6
365,234 - DZA65_RS01680 0.20 +0.7
365,234 - DZA65_RS01680 0.20 -1.4
365,234 - -0.4
365,234 - DZA65_RS01680 0.20 -1.6
365,234 - DZA65_RS01680 0.20 +0.3
365,234 - DZA65_RS01680 0.20 +2.0
365,267 + DZA65_RS01680 0.22 +0.2
365,267 + DZA65_RS01680 0.22 +0.3
365,267 + DZA65_RS01680 0.22 +0.3
365,267 + DZA65_RS01680 0.22 +0.2
365,268 - DZA65_RS01680 0.22 -0.0
365,268 - DZA65_RS01680 0.22 -0.0
365,268 - DZA65_RS01680 0.22 -0.1
365,268 - DZA65_RS01680 0.22 -1.0
365,404 + DZA65_RS01680 0.29 +1.6
365,405 - DZA65_RS01680 0.29 -0.7
365,405 - DZA65_RS01680 0.29 -0.0
365,591 - DZA65_RS01680 0.38 +0.6
365,744 + DZA65_RS01680 0.45 -1.4
365,770 + DZA65_RS01680 0.47 -0.2
365,771 - DZA65_RS01680 0.47 +1.6

Or see this region's nucleotide sequence