Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01585 and DZA65_RS01590 are separated by 236 nucleotides DZA65_RS01590 and DZA65_RS01595 are separated by 210 nucleotides DZA65_RS01595 and DZA65_RS01605 are separated by 254 nucleotides DZA65_RS01605 and DZA65_RS01610 are separated by 15 nucleotides
DZA65_RS01585: DZA65_RS01585 - serine endoprotease DegQ, at 343,774 to 345,144
_RS01585
DZA65_RS01590: DZA65_RS01590 - DUF1043 family protein, at 345,381 to 345,785
_RS01590
DZA65_RS01595: DZA65_RS01595 - cell division protein ZapE, at 345,996 to 347,126
_RS01595
DZA65_RS01605: DZA65_RS01605 - 50S ribosomal protein L13, at 347,381 to 347,809
_RS01605
DZA65_RS01610: DZA65_RS01610 - 30S ribosomal protein S9, at 347,825 to 348,217
_RS01610
Position (kb) 345
346
347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 345.001 kb on + strand, within DZA65_RS01585 at 345.001 kb on + strand, within DZA65_RS01585 at 345.001 kb on + strand, within DZA65_RS01585 at 345.046 kb on + strand at 345.047 kb on - strand at 345.102 kb on + strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.121 kb on - strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.122 kb on + strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.123 kb on - strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.124 kb on + strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.125 kb on - strand at 345.172 kb on + strand at 345.179 kb on - strand at 345.179 kb on - strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.189 kb on + strand at 345.190 kb on - strand at 345.190 kb on - strand at 345.190 kb on - strand at 345.190 kb on - strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.191 kb on + strand at 345.192 kb on - strand at 345.192 kb on - strand at 345.192 kb on - strand at 345.192 kb on - strand at 345.194 kb on - strand at 345.237 kb on - strand at 345.249 kb on + strand at 345.249 kb on + strand at 345.249 kb on + strand at 345.250 kb on - strand at 345.267 kb on + strand at 345.267 kb on + strand at 345.267 kb on + strand at 345.268 kb on - strand at 345.333 kb on + strand at 345.333 kb on + strand at 345.333 kb on + strand at 345.334 kb on - strand at 345.350 kb on + strand at 345.351 kb on - strand at 345.387 kb on - strand at 345.387 kb on - strand at 345.387 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.834 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.837 kb on - strand at 345.840 kb on - strand at 345.840 kb on - strand at 345.846 kb on + strand at 345.846 kb on + strand at 345.846 kb on + strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.847 kb on - strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.880 kb on + strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.881 kb on - strand at 345.931 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.964 kb on + strand at 345.965 kb on - strand at 345.965 kb on - strand at 345.965 kb on - strand at 346.050 kb on + strand at 346.050 kb on + strand at 346.050 kb on + strand at 346.129 kb on + strand, within DZA65_RS01595 at 346.130 kb on - strand, within DZA65_RS01595 at 346.130 kb on - strand, within DZA65_RS01595 at 346.130 kb on - strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.221 kb on + strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.222 kb on - strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.223 kb on + strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.224 kb on - strand, within DZA65_RS01595 at 346.248 kb on - strand, within DZA65_RS01595 at 346.398 kb on - strand, within DZA65_RS01595 at 346.446 kb on - strand, within DZA65_RS01595 at 346.523 kb on + strand, within DZA65_RS01595 at 346.523 kb on + strand, within DZA65_RS01595 at 346.524 kb on - strand, within DZA65_RS01595 at 346.542 kb on + strand, within DZA65_RS01595 at 346.580 kb on + strand, within DZA65_RS01595 at 346.609 kb on + strand, within DZA65_RS01595 at 346.609 kb on + strand, within DZA65_RS01595 at 346.609 kb on + strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.610 kb on - strand, within DZA65_RS01595 at 346.646 kb on + strand, within DZA65_RS01595 at 346.646 kb on + strand, within DZA65_RS01595 at 346.647 kb on - strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.668 kb on + strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.669 kb on - strand, within DZA65_RS01595 at 346.769 kb on + strand, within DZA65_RS01595 at 346.770 kb on - strand, within DZA65_RS01595 at 346.770 kb on - strand, within DZA65_RS01595 at 346.863 kb on + strand, within DZA65_RS01595 at 346.863 kb on + strand, within DZA65_RS01595 at 346.863 kb on + strand, within DZA65_RS01595 at 346.863 kb on + strand, within DZA65_RS01595 at 346.863 kb on + strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.864 kb on - strand, within DZA65_RS01595 at 346.884 kb on + strand, within DZA65_RS01595 at 346.884 kb on + strand, within DZA65_RS01595 at 346.885 kb on - strand, within DZA65_RS01595 at 346.885 kb on - strand, within DZA65_RS01595 at 346.885 kb on - strand, within DZA65_RS01595 at 346.974 kb on + strand, within DZA65_RS01595 at 346.974 kb on + strand, within DZA65_RS01595 at 346.974 kb on + strand, within DZA65_RS01595 at 346.975 kb on - strand, within DZA65_RS01595 at 346.997 kb on + strand, within DZA65_RS01595 at 346.997 kb on + strand, within DZA65_RS01595 at 346.997 kb on + strand, within DZA65_RS01595 at 346.997 kb on + strand, within DZA65_RS01595 at 346.997 kb on + strand, within DZA65_RS01595 at 346.998 kb on - strand, within DZA65_RS01595 at 346.998 kb on - strand, within DZA65_RS01595 at 346.998 kb on - strand, within DZA65_RS01595 at 346.998 kb on - strand, within DZA65_RS01595 at 347.029 kb on - strand at 347.055 kb on + strand at 347.100 kb on + strand at 347.101 kb on - strand at 347.101 kb on - strand at 347.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 345,001 + DZA65_RS01585 0.89 +0.5 345,001 + DZA65_RS01585 0.89 -0.7 345,001 + DZA65_RS01585 0.89 -0.7 345,046 + -0.6 345,047 - -0.7 345,102 + +0.4 345,121 - -0.9 345,121 - -0.6 345,121 - +0.7 345,121 - -1.0 345,121 - -0.9 345,122 + -0.4 345,122 + -1.7 345,122 + +0.3 345,122 + -0.3 345,122 + -0.7 345,122 + -1.6 345,122 + +1.3 345,122 + -1.4 345,122 + +0.9 345,122 + -0.3 345,122 + +0.2 345,123 - +0.3 345,123 - -1.0 345,123 - -2.3 345,123 - -0.1 345,123 - -0.3 345,123 - -0.4 345,123 - -0.9 345,123 - -0.7 345,123 - -0.6 345,123 - -0.4 345,123 - -0.5 345,124 + -0.4 345,124 + +0.3 345,124 + -1.2 345,124 + -1.0 345,124 + +0.1 345,124 + -1.1 345,124 + -0.8 345,124 + +1.1 345,124 + +0.5 345,124 + +0.1 345,124 + +0.7 345,125 - -0.0 345,125 - -0.1 345,125 - -0.1 345,125 - -0.2 345,125 - +0.5 345,125 - -1.3 345,125 - +0.6 345,125 - -0.7 345,125 - +1.1 345,125 - -0.0 345,125 - -0.0 345,125 - -1.7 345,125 - +0.6 345,125 - +0.3 345,125 - -0.3 345,172 + -1.4 345,179 - -0.1 345,179 - -2.3 345,189 + -0.9 345,189 + +0.2 345,189 + -0.4 345,189 + +1.4 345,189 + -1.6 345,190 - +0.1 345,190 - +0.6 345,190 - -0.0 345,190 - +0.9 345,191 + +0.6 345,191 + -0.9 345,191 + -0.2 345,191 + -1.1 345,191 + +0.7 345,191 + -0.6 345,191 + -1.2 345,191 + -1.0 345,192 - +1.6 345,192 - -1.4 345,192 - -0.7 345,192 - -2.3 345,194 - -0.3 345,237 - +0.3 345,249 + +0.4 345,249 + -0.6 345,249 + +1.0 345,250 - -0.6 345,267 + -0.0 345,267 + -0.5 345,267 + -1.4 345,268 - -0.6 345,333 + -1.7 345,333 + -0.6 345,333 + -1.1 345,334 - +0.1 345,350 + -1.6 345,351 - +1.4 345,387 - +0.2 345,387 - -0.5 345,387 - -0.2 345,834 - -1.1 345,834 - -0.3 345,834 - +0.6 345,834 - -0.6 345,834 - -0.6 345,834 - -0.9 345,834 - -1.2 345,834 - +0.1 345,837 - +0.4 345,837 - +0.9 345,837 - +0.4 345,837 - -0.7 345,837 - +0.1 345,837 - +0.4 345,840 - +0.6 345,840 - -2.7 345,846 + -0.8 345,846 + -1.4 345,846 + +0.1 345,847 - -1.2 345,847 - -0.1 345,847 - -0.0 345,847 - -2.2 345,847 - -1.2 345,847 - +0.3 345,880 + +0.1 345,880 + -2.2 345,880 + +0.1 345,880 + -0.2 345,881 - -1.0 345,881 - -0.3 345,881 - -0.9 345,881 - +1.3 345,931 + -0.1 345,964 + -0.4 345,964 + +1.6 345,964 + -0.7 345,964 + -0.3 345,964 + +0.9 345,965 - +0.4 345,965 - +0.4 345,965 - +0.4 346,050 + -1.2 346,050 + -1.1 346,050 + +0.3 346,129 + DZA65_RS01595 0.12 -0.2 346,130 - DZA65_RS01595 0.12 +0.5 346,130 - DZA65_RS01595 0.12 -1.4 346,130 - DZA65_RS01595 0.12 +0.8 346,221 + DZA65_RS01595 0.20 -0.6 346,221 + DZA65_RS01595 0.20 -1.6 346,221 + DZA65_RS01595 0.20 +0.3 346,221 + DZA65_RS01595 0.20 +1.6 346,221 + DZA65_RS01595 0.20 +1.0 346,221 + DZA65_RS01595 0.20 -0.4 346,221 + DZA65_RS01595 0.20 -0.2 346,221 + DZA65_RS01595 0.20 +1.2 346,221 + DZA65_RS01595 0.20 -0.7 346,222 - DZA65_RS01595 0.20 -0.0 346,222 - DZA65_RS01595 0.20 -0.1 346,222 - DZA65_RS01595 0.20 -1.4 346,222 - DZA65_RS01595 0.20 -1.4 346,222 - DZA65_RS01595 0.20 +0.1 346,222 - DZA65_RS01595 0.20 -0.3 346,222 - DZA65_RS01595 0.20 -0.7 346,222 - DZA65_RS01595 0.20 -1.2 346,222 - DZA65_RS01595 0.20 -0.4 346,222 - DZA65_RS01595 0.20 +0.7 346,222 - DZA65_RS01595 0.20 -0.4 346,222 - DZA65_RS01595 0.20 +0.6 346,222 - DZA65_RS01595 0.20 -2.2 346,222 - DZA65_RS01595 0.20 -0.6 346,223 + DZA65_RS01595 0.20 -1.2 346,223 + DZA65_RS01595 0.20 -1.6 346,223 + DZA65_RS01595 0.20 +0.2 346,223 + DZA65_RS01595 0.20 -0.1 346,223 + +0.8 346,223 + DZA65_RS01595 0.20 -1.6 346,223 + DZA65_RS01595 0.20 +0.2 346,223 + DZA65_RS01595 0.20 +1.2 346,223 + DZA65_RS01595 0.20 -1.1 346,223 + -0.7 346,223 + DZA65_RS01595 0.20 -0.0 346,223 + DZA65_RS01595 0.20 -0.5 346,223 + DZA65_RS01595 0.20 -1.1 346,223 + DZA65_RS01595 0.20 -0.4 346,224 - DZA65_RS01595 0.20 -0.9 346,224 - DZA65_RS01595 0.20 -1.6 346,224 - DZA65_RS01595 0.20 -1.4 346,224 - DZA65_RS01595 0.20 +0.6 346,224 - DZA65_RS01595 0.20 -1.6 346,224 - DZA65_RS01595 0.20 +0.8 346,224 - DZA65_RS01595 0.20 +1.1 346,224 - DZA65_RS01595 0.20 -0.8 346,224 - DZA65_RS01595 0.20 -1.2 346,224 - DZA65_RS01595 0.20 -0.6 346,224 - DZA65_RS01595 0.20 -0.7 346,224 - DZA65_RS01595 0.20 -0.3 346,224 - DZA65_RS01595 0.20 -0.0 346,224 - DZA65_RS01595 0.20 -1.5 346,224 - DZA65_RS01595 0.20 +0.4 346,224 - DZA65_RS01595 0.20 -1.1 346,248 - DZA65_RS01595 0.22 -0.5 346,398 - DZA65_RS01595 0.36 -0.4 346,446 - DZA65_RS01595 0.40 +0.7 346,523 + DZA65_RS01595 0.47 -0.0 346,523 + DZA65_RS01595 0.47 -1.1 346,524 - DZA65_RS01595 0.47 +0.8 346,542 + DZA65_RS01595 0.48 -0.0 346,580 + DZA65_RS01595 0.52 -2.0 346,609 + DZA65_RS01595 0.54 -0.7 346,609 + DZA65_RS01595 0.54 -1.0 346,609 + DZA65_RS01595 0.54 -0.4 346,610 - DZA65_RS01595 0.54 -0.9 346,610 - DZA65_RS01595 0.54 -1.1 346,610 - DZA65_RS01595 0.54 -0.3 346,610 - DZA65_RS01595 0.54 -0.4 346,610 - DZA65_RS01595 0.54 -0.6 346,646 + DZA65_RS01595 0.57 -0.1 346,646 + DZA65_RS01595 0.57 -1.0 346,647 - DZA65_RS01595 0.58 -0.7 346,668 + DZA65_RS01595 0.59 -1.3 346,668 + DZA65_RS01595 0.59 -1.1 346,668 + DZA65_RS01595 0.59 -0.2 346,668 + DZA65_RS01595 0.59 -0.3 346,668 + DZA65_RS01595 0.59 -1.4 346,669 - DZA65_RS01595 0.60 -1.7 346,669 - DZA65_RS01595 0.60 +1.1 346,669 - DZA65_RS01595 0.60 -0.2 346,669 - DZA65_RS01595 0.60 -0.6 346,669 - DZA65_RS01595 0.60 -0.2 346,669 - DZA65_RS01595 0.60 -0.2 346,669 - DZA65_RS01595 0.60 -0.4 346,769 + DZA65_RS01595 0.68 -0.6 346,770 - DZA65_RS01595 0.68 -1.4 346,770 - DZA65_RS01595 0.68 -0.9 346,863 + DZA65_RS01595 0.77 +0.6 346,863 + DZA65_RS01595 0.77 -0.5 346,863 + DZA65_RS01595 0.77 +0.6 346,863 + DZA65_RS01595 0.77 +0.1 346,863 + DZA65_RS01595 0.77 -0.8 346,864 - DZA65_RS01595 0.77 +0.6 346,864 - DZA65_RS01595 0.77 +0.6 346,864 - DZA65_RS01595 0.77 +0.8 346,864 - DZA65_RS01595 0.77 -0.7 346,864 - DZA65_RS01595 0.77 -0.8 346,864 - DZA65_RS01595 0.77 -0.3 346,864 - DZA65_RS01595 0.77 +1.2 346,864 - DZA65_RS01595 0.77 +1.1 346,884 + DZA65_RS01595 0.79 +1.6 346,884 + DZA65_RS01595 0.79 -0.3 346,885 - DZA65_RS01595 0.79 +1.6 346,885 - DZA65_RS01595 0.79 -0.2 346,885 - DZA65_RS01595 0.79 +0.2 346,974 + DZA65_RS01595 0.86 +0.4 346,974 + DZA65_RS01595 0.86 -0.7 346,974 + DZA65_RS01595 0.86 -1.6 346,975 - DZA65_RS01595 0.87 +1.2 346,997 + DZA65_RS01595 0.89 +0.8 346,997 + DZA65_RS01595 0.89 -0.6 346,997 + DZA65_RS01595 0.89 -0.9 346,997 + DZA65_RS01595 0.89 -0.4 346,997 + DZA65_RS01595 0.89 -0.7 346,998 - DZA65_RS01595 0.89 -1.0 346,998 - DZA65_RS01595 0.89 -0.8 346,998 - DZA65_RS01595 0.89 +1.2 346,998 - DZA65_RS01595 0.89 -0.8 347,029 - -0.2 347,055 + +0.3 347,100 + +0.8 347,101 - -0.4 347,101 - -0.0 347,155 - -1.6
Or see this region's nucleotide sequence