Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01170 and DZA65_RS01175 are separated by 275 nucleotides DZA65_RS01175 and DZA65_RS01180 are separated by 259 nucleotides DZA65_RS01180 and DZA65_RS22770 are separated by 24 nucleotides DZA65_RS22770 and DZA65_RS01185 overlap by 4 nucleotides
DZA65_RS01170: DZA65_RS01170 - DUF1176 domain-containing protein, at 263,862 to 264,959
_RS01170
DZA65_RS01175: DZA65_RS01175 - DUF1127 domain-containing protein, at 265,235 to 265,414
_RS01175
DZA65_RS01180: DZA65_RS01180 - DUF1127 domain-containing protein, at 265,674 to 265,865
_RS01180
DZA65_RS22770: DZA65_RS22770 - hypothetical protein, at 265,890 to 266,033
_RS22770
DZA65_RS01185: DZA65_RS01185 - PLP-dependent aminotransferase family protein, at 266,030 to 267,460
_RS01185
Position (kb) 265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 264.753 kb on - strand, within DZA65_RS01170 at 264.766 kb on - strand, within DZA65_RS01170 at 264.766 kb on - strand, within DZA65_RS01170 at 264.766 kb on - strand, within DZA65_RS01170 at 264.789 kb on + strand, within DZA65_RS01170 at 264.789 kb on + strand, within DZA65_RS01170 at 264.789 kb on + strand, within DZA65_RS01170 at 264.789 kb on + strand, within DZA65_RS01170 at 264.789 kb on + strand, within DZA65_RS01170 at 264.790 kb on - strand, within DZA65_RS01170 at 264.790 kb on - strand, within DZA65_RS01170 at 264.790 kb on - strand, within DZA65_RS01170 at 264.790 kb on - strand, within DZA65_RS01170 at 264.854 kb on + strand at 264.855 kb on - strand at 264.876 kb on + strand at 264.876 kb on + strand at 264.876 kb on + strand at 264.877 kb on - strand at 264.877 kb on - strand at 264.877 kb on - strand at 264.882 kb on + strand at 264.883 kb on - strand at 264.883 kb on - strand at 264.883 kb on - strand at 264.883 kb on - strand at 264.896 kb on + strand at 264.896 kb on + strand at 264.896 kb on + strand at 264.897 kb on - strand at 264.897 kb on - strand at 265.039 kb on - strand at 265.039 kb on - strand at 265.057 kb on + strand at 265.074 kb on + strand at 265.074 kb on + strand at 265.075 kb on - strand at 265.075 kb on - strand at 265.075 kb on - strand at 265.075 kb on - strand at 265.143 kb on - strand at 265.143 kb on - strand at 265.143 kb on - strand at 265.151 kb on + strand at 265.151 kb on + strand at 265.152 kb on - strand at 265.152 kb on - strand at 265.154 kb on + strand at 265.208 kb on + strand at 265.297 kb on + strand, within DZA65_RS01175 at 265.297 kb on + strand, within DZA65_RS01175 at 265.297 kb on + strand, within DZA65_RS01175 at 265.297 kb on + strand, within DZA65_RS01175 at 265.297 kb on + strand, within DZA65_RS01175 at 265.298 kb on - strand, within DZA65_RS01175 at 265.298 kb on - strand, within DZA65_RS01175 at 265.301 kb on + strand, within DZA65_RS01175 at 265.301 kb on + strand, within DZA65_RS01175 at 265.301 kb on + strand, within DZA65_RS01175 at 265.302 kb on - strand, within DZA65_RS01175 at 265.302 kb on - strand, within DZA65_RS01175 at 265.302 kb on - strand, within DZA65_RS01175 at 265.302 kb on - strand, within DZA65_RS01175 at 265.344 kb on + strand, within DZA65_RS01175 at 265.344 kb on + strand, within DZA65_RS01175 at 265.401 kb on + strand at 265.401 kb on + strand at 265.421 kb on - strand at 265.439 kb on + strand at 265.440 kb on - strand at 265.440 kb on - strand at 265.442 kb on + strand at 265.442 kb on + strand at 265.442 kb on + strand at 265.442 kb on + strand at 265.443 kb on - strand at 265.443 kb on - strand at 265.443 kb on - strand at 265.443 kb on - strand at 265.472 kb on + strand at 265.472 kb on + strand at 265.502 kb on + strand at 265.503 kb on - strand at 265.518 kb on + strand at 265.519 kb on - strand at 265.632 kb on - strand at 265.650 kb on + strand at 265.650 kb on + strand at 265.651 kb on - strand at 265.651 kb on - strand at 265.718 kb on + strand, within DZA65_RS01180 at 265.745 kb on + strand, within DZA65_RS01180 at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.854 kb on + strand at 265.855 kb on - strand at 265.855 kb on - strand at 265.855 kb on - strand at 265.855 kb on - strand at 265.855 kb on - strand at 265.857 kb on + strand at 265.857 kb on + strand at 265.857 kb on + strand at 265.857 kb on + strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.858 kb on - strand at 265.893 kb on + strand at 265.893 kb on + strand at 265.893 kb on + strand at 265.893 kb on + strand at 265.893 kb on + strand at 265.893 kb on + strand at 265.893 kb on + strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.894 kb on - strand at 265.916 kb on + strand, within DZA65_RS22770 at 265.963 kb on + strand, within DZA65_RS22770 at 265.963 kb on + strand, within DZA65_RS22770 at 265.963 kb on + strand, within DZA65_RS22770 at 265.964 kb on - strand, within DZA65_RS22770 at 265.964 kb on - strand, within DZA65_RS22770 at 265.964 kb on - strand, within DZA65_RS22770 at 266.001 kb on + strand, within DZA65_RS22770 at 266.023 kb on + strand at 266.023 kb on + strand at 266.023 kb on + strand at 266.024 kb on - strand at 266.024 kb on - strand at 266.029 kb on + strand at 266.029 kb on + strand at 266.030 kb on - strand at 266.030 kb on - strand at 266.030 kb on - strand at 266.058 kb on + strand at 266.087 kb on + strand at 266.087 kb on + strand at 266.087 kb on + strand at 266.088 kb on - strand at 266.115 kb on + strand at 266.116 kb on - strand at 266.124 kb on + strand at 266.124 kb on + strand at 266.124 kb on + strand at 266.146 kb on + strand at 266.146 kb on + strand at 266.168 kb on + strand at 266.169 kb on - strand at 266.169 kb on - strand at 266.169 kb on - strand at 266.169 kb on - strand at 266.169 kb on - strand at 266.227 kb on + strand, within DZA65_RS01185 at 266.400 kb on + strand, within DZA65_RS01185 at 266.410 kb on + strand, within DZA65_RS01185 at 266.411 kb on - strand, within DZA65_RS01185 at 266.472 kb on + strand, within DZA65_RS01185 at 266.472 kb on + strand, within DZA65_RS01185 at 266.560 kb on + strand, within DZA65_RS01185 at 266.560 kb on + strand, within DZA65_RS01185 at 266.596 kb on + strand, within DZA65_RS01185 at 266.596 kb on + strand, within DZA65_RS01185 at 266.596 kb on + strand, within DZA65_RS01185 at 266.597 kb on - strand, within DZA65_RS01185 at 266.597 kb on - strand, within DZA65_RS01185 at 266.597 kb on - strand, within DZA65_RS01185 at 266.653 kb on - strand, within DZA65_RS01185 at 266.653 kb on - strand, within DZA65_RS01185 at 266.653 kb on - strand, within DZA65_RS01185
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 264,753 - DZA65_RS01170 0.81 -0.2 264,766 - DZA65_RS01170 0.82 +0.3 264,766 - DZA65_RS01170 0.82 -2.2 264,766 - DZA65_RS01170 0.82 -0.1 264,789 + DZA65_RS01170 0.84 +2.1 264,789 + DZA65_RS01170 0.84 -0.7 264,789 + DZA65_RS01170 0.84 -2.7 264,789 + DZA65_RS01170 0.84 +0.0 264,789 + DZA65_RS01170 0.84 -0.7 264,790 - DZA65_RS01170 0.85 +0.4 264,790 - DZA65_RS01170 0.85 -0.2 264,790 - DZA65_RS01170 0.85 -0.2 264,790 - DZA65_RS01170 0.85 -0.6 264,854 + +1.3 264,855 - -1.6 264,876 + -0.7 264,876 + +2.2 264,876 + +1.0 264,877 - +0.9 264,877 - +1.2 264,877 - -0.9 264,882 + -1.0 264,883 - -0.8 264,883 - -0.6 264,883 - -1.9 264,883 - +1.0 264,896 + +0.0 264,896 + -0.5 264,896 + -0.2 264,897 - -1.0 264,897 - +0.3 265,039 - -0.6 265,039 - -0.3 265,057 + +0.0 265,074 + +1.6 265,074 + -0.5 265,075 - -0.4 265,075 - -1.2 265,075 - -0.6 265,075 - +1.0 265,143 - -1.1 265,143 - -0.7 265,143 - +0.7 265,151 + +1.6 265,151 + +0.2 265,152 - +0.9 265,152 - +1.6 265,154 + +0.5 265,208 + -0.3 265,297 + DZA65_RS01175 0.34 -0.4 265,297 + DZA65_RS01175 0.34 -1.4 265,297 + DZA65_RS01175 0.34 +0.0 265,297 + DZA65_RS01175 0.34 -0.2 265,297 + DZA65_RS01175 0.34 +0.0 265,298 - DZA65_RS01175 0.35 +1.6 265,298 - DZA65_RS01175 0.35 +0.8 265,301 + DZA65_RS01175 0.37 +0.9 265,301 + DZA65_RS01175 0.37 -0.2 265,301 + DZA65_RS01175 0.37 +0.3 265,302 - DZA65_RS01175 0.37 -0.1 265,302 - DZA65_RS01175 0.37 +0.0 265,302 - DZA65_RS01175 0.37 -0.1 265,302 - DZA65_RS01175 0.37 -0.6 265,344 + DZA65_RS01175 0.61 -0.2 265,344 + DZA65_RS01175 0.61 -0.3 265,401 + +0.5 265,401 + +1.0 265,421 - +0.7 265,439 + -1.1 265,440 - -0.2 265,440 - -1.0 265,442 + +0.1 265,442 + -0.8 265,442 + -0.7 265,442 + -1.6 265,443 - +1.3 265,443 - -1.9 265,443 - -0.2 265,443 - +0.0 265,472 + -1.9 265,472 + -0.2 265,502 + -0.7 265,503 - -0.9 265,518 + -1.1 265,519 - -1.6 265,632 - +0.2 265,650 + +0.7 265,650 + -0.2 265,651 - +0.8 265,651 - +0.0 265,718 + DZA65_RS01180 0.23 -0.7 265,745 + DZA65_RS01180 0.37 -0.6 265,854 + -1.6 265,854 + -0.4 265,854 + +0.3 265,854 + -1.1 265,854 + +2.2 265,854 + +0.7 265,854 + -0.3 265,854 + -0.5 265,854 + -0.3 265,854 + -0.8 265,854 + +0.2 265,854 + -0.3 265,854 + -0.4 265,855 - +0.9 265,855 - -0.3 265,855 - -1.4 265,855 - +0.6 265,855 - -0.8 265,857 + -0.1 265,857 + +0.4 265,857 + +1.0 265,857 + -1.9 265,858 - -0.6 265,858 - -0.3 265,858 - +0.3 265,858 - -2.2 265,858 - +0.1 265,858 - -0.1 265,858 - -0.1 265,858 - -1.0 265,893 + -1.2 265,893 + +2.6 265,893 + -1.0 265,893 + -1.5 265,893 + -0.1 265,893 + +0.5 265,893 + -0.8 265,894 - -0.3 265,894 - -0.7 265,894 - +0.2 265,894 - +0.3 265,894 - -0.2 265,894 - -0.9 265,894 - -0.9 265,894 - +0.2 265,894 - +0.4 265,894 - +0.3 265,894 - -1.6 265,916 + DZA65_RS22770 0.18 -1.3 265,963 + DZA65_RS22770 0.51 +0.6 265,963 + DZA65_RS22770 0.51 +1.0 265,963 + DZA65_RS22770 0.51 +0.2 265,964 - DZA65_RS22770 0.51 -1.5 265,964 - DZA65_RS22770 0.51 +0.2 265,964 - DZA65_RS22770 0.51 +0.0 266,001 + DZA65_RS22770 0.77 -1.0 266,023 + -0.3 266,023 + +0.5 266,023 + -0.3 266,024 - -1.2 266,024 - +0.0 266,029 + -0.0 266,029 + -1.3 266,030 - -0.1 266,030 - +0.0 266,030 - +0.7 266,058 + -0.4 266,087 + -0.4 266,087 + +0.1 266,087 + -1.6 266,088 - -0.2 266,115 + +0.9 266,116 - -0.7 266,124 + -0.2 266,124 + -0.6 266,124 + -0.2 266,146 + +1.2 266,146 + -0.2 266,168 + +1.1 266,169 - -1.1 266,169 - -0.1 266,169 - +1.1 266,169 - +0.2 266,169 - -1.6 266,227 + DZA65_RS01185 0.14 +0.2 266,400 + DZA65_RS01185 0.26 +2.4 266,410 + DZA65_RS01185 0.27 -0.8 266,411 - DZA65_RS01185 0.27 -0.5 266,472 + DZA65_RS01185 0.31 -0.9 266,472 + DZA65_RS01185 0.31 -0.5 266,560 + DZA65_RS01185 0.37 -0.1 266,560 + DZA65_RS01185 0.37 -0.5 266,596 + DZA65_RS01185 0.40 -1.0 266,596 + DZA65_RS01185 0.40 +1.0 266,596 + DZA65_RS01185 0.40 -2.1 266,597 - DZA65_RS01185 0.40 +0.2 266,597 - DZA65_RS01185 0.40 +0.3 266,597 - DZA65_RS01185 0.40 -0.7 266,653 - DZA65_RS01185 0.44 -0.4 266,653 - DZA65_RS01185 0.44 -0.1 266,653 - DZA65_RS01185 0.44 +0.1
Or see this region's nucleotide sequence