Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01005

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01000 and DZA65_RS01005 are separated by 49 nucleotidesDZA65_RS01005 and DZA65_RS01010 are separated by 94 nucleotides DZA65_RS01000: DZA65_RS01000 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 227,039 to 228,526 _RS01000 DZA65_RS01005: DZA65_RS01005 - NAD(P)H-flavin reductase, at 228,576 to 229,277 _RS01005 DZA65_RS01010: DZA65_RS01010 - FAD-dependent oxidoreductase, at 229,372 to 231,045 _RS01010 Position (kb) 228 229 230Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 228.478 kb on + strandat 228.534 kb on + strandat 228.562 kb on + strandat 228.562 kb on + strandat 228.593 kb on + strandat 228.593 kb on + strandat 228.599 kb on - strandat 228.792 kb on + strand, within DZA65_RS01005at 228.924 kb on + strand, within DZA65_RS01005at 228.928 kb on + strand, within DZA65_RS01005at 228.928 kb on + strand, within DZA65_RS01005at 228.976 kb on + strand, within DZA65_RS01005at 228.976 kb on + strand, within DZA65_RS01005at 228.977 kb on - strand, within DZA65_RS01005at 229.167 kb on - strand, within DZA65_RS01005at 229.170 kb on + strand, within DZA65_RS01005at 229.171 kb on - strand, within DZA65_RS01005at 229.171 kb on - strand, within DZA65_RS01005at 229.171 kb on - strand, within DZA65_RS01005at 229.171 kb on - strand, within DZA65_RS01005at 229.251 kb on + strandat 229.272 kb on - strandat 229.272 kb on - strandat 229.328 kb on - strandat 229.330 kb on - strandat 229.360 kb on + strandat 229.361 kb on - strandat 229.373 kb on + strandat 229.373 kb on + strandat 229.374 kb on - strandat 229.374 kb on - strandat 229.374 kb on - strandat 229.402 kb on - strandat 229.539 kb on + strandat 229.539 kb on + strandat 229.540 kb on - strand, within DZA65_RS01010at 229.644 kb on + strand, within DZA65_RS01010at 229.644 kb on + strand, within DZA65_RS01010at 229.644 kb on + strand, within DZA65_RS01010at 229.644 kb on + strand, within DZA65_RS01010at 229.644 kb on + strand, within DZA65_RS01010at 229.644 kb on + strand, within DZA65_RS01010at 229.645 kb on - strand, within DZA65_RS01010at 229.745 kb on + strand, within DZA65_RS01010at 229.900 kb on + strandat 229.900 kb on + strand, within DZA65_RS01010at 229.900 kb on + strand, within DZA65_RS01010at 229.900 kb on + strand, within DZA65_RS01010at 229.900 kb on + strand, within DZA65_RS01010at 229.900 kb on + strand, within DZA65_RS01010at 229.900 kb on + strand, within DZA65_RS01010at 229.900 kb on + strand, within DZA65_RS01010at 229.901 kb on - strand, within DZA65_RS01010at 229.901 kb on - strand, within DZA65_RS01010at 229.901 kb on - strand, within DZA65_RS01010at 229.901 kb on - strand, within DZA65_RS01010at 229.901 kb on - strand, within DZA65_RS01010at 229.901 kb on - strand, within DZA65_RS01010at 229.919 kb on + strand, within DZA65_RS01010at 229.919 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.946 kb on + strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 229.947 kb on - strand, within DZA65_RS01010at 230.023 kb on + strand, within DZA65_RS01010at 230.023 kb on + strand, within DZA65_RS01010at 230.023 kb on + strand, within DZA65_RS01010at 230.023 kb on + strand, within DZA65_RS01010at 230.023 kb on + strand, within DZA65_RS01010at 230.024 kb on - strand, within DZA65_RS01010at 230.024 kb on - strand, within DZA65_RS01010at 230.024 kb on - strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.057 kb on + strand, within DZA65_RS01010at 230.058 kb on - strand, within DZA65_RS01010at 230.058 kb on - strand, within DZA65_RS01010at 230.058 kb on - strand, within DZA65_RS01010at 230.058 kb on - strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.079 kb on + strand, within DZA65_RS01010at 230.080 kb on - strand, within DZA65_RS01010at 230.080 kb on - strand, within DZA65_RS01010at 230.080 kb on - strand, within DZA65_RS01010at 230.080 kb on - strand, within DZA65_RS01010at 230.080 kb on - strand, within DZA65_RS01010at 230.186 kb on + strandat 230.186 kb on + strand, within DZA65_RS01010at 230.186 kb on + strand, within DZA65_RS01010at 230.186 kb on + strand, within DZA65_RS01010at 230.186 kb on + strand, within DZA65_RS01010at 230.186 kb on + strand, within DZA65_RS01010at 230.186 kb on + strand, within DZA65_RS01010at 230.187 kb on - strand, within DZA65_RS01010at 230.187 kb on - strand, within DZA65_RS01010at 230.187 kb on - strand, within DZA65_RS01010at 230.187 kb on - strand, within DZA65_RS01010at 230.187 kb on - strand, within DZA65_RS01010at 230.251 kb on + strand, within DZA65_RS01010at 230.252 kb on - strand, within DZA65_RS01010at 230.252 kb on - strand, within DZA65_RS01010at 230.252 kb on - strand, within DZA65_RS01010at 230.252 kb on - strand, within DZA65_RS01010

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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228,478 + +2.2
228,534 + -0.1
228,562 + +1.3
228,562 + +0.4
228,593 + -1.2
228,593 + +1.2
228,599 - -0.7
228,792 + DZA65_RS01005 0.31 -0.4
228,924 + DZA65_RS01005 0.50 -1.7
228,928 + DZA65_RS01005 0.50 -0.2
228,928 + DZA65_RS01005 0.50 -2.4
228,976 + DZA65_RS01005 0.57 -1.6
228,976 + DZA65_RS01005 0.57 -1.3
228,977 - DZA65_RS01005 0.57 -0.2
229,167 - DZA65_RS01005 0.84 -1.3
229,170 + DZA65_RS01005 0.85 -1.6
229,171 - DZA65_RS01005 0.85 -1.8
229,171 - DZA65_RS01005 0.85 -0.7
229,171 - DZA65_RS01005 0.85 -1.6
229,171 - DZA65_RS01005 0.85 -0.4
229,251 + +1.0
229,272 - -1.5
229,272 - -2.8
229,328 - +0.7
229,330 - +0.5
229,360 + -0.6
229,361 - +0.2
229,373 + +0.4
229,373 + +0.3
229,374 - -0.4
229,374 - -1.8
229,374 - -0.3
229,402 - -0.1
229,539 + -0.5
229,539 + +0.2
229,540 - DZA65_RS01010 0.10 -0.2
229,644 + DZA65_RS01010 0.16 +0.0
229,644 + DZA65_RS01010 0.16 +0.6
229,644 + DZA65_RS01010 0.16 -0.5
229,644 + DZA65_RS01010 0.16 +0.0
229,644 + DZA65_RS01010 0.16 -0.8
229,644 + DZA65_RS01010 0.16 -0.6
229,645 - DZA65_RS01010 0.16 -0.4
229,745 + DZA65_RS01010 0.22 -0.9
229,900 + +1.6
229,900 + DZA65_RS01010 0.32 -0.2
229,900 + DZA65_RS01010 0.32 +1.0
229,900 + DZA65_RS01010 0.32 -2.0
229,900 + DZA65_RS01010 0.32 +0.4
229,900 + DZA65_RS01010 0.32 -1.0
229,900 + DZA65_RS01010 0.32 -0.4
229,900 + DZA65_RS01010 0.32 +0.7
229,901 - DZA65_RS01010 0.32 +1.0
229,901 - DZA65_RS01010 0.32 -0.7
229,901 - DZA65_RS01010 0.32 -1.1
229,901 - DZA65_RS01010 0.32 +0.8
229,901 - DZA65_RS01010 0.32 +1.2
229,901 - DZA65_RS01010 0.32 +0.2
229,919 + DZA65_RS01010 0.33 -0.1
229,919 + DZA65_RS01010 0.33 -1.0
229,946 + DZA65_RS01010 0.34 -0.1
229,946 + DZA65_RS01010 0.34 -0.3
229,946 + DZA65_RS01010 0.34 -0.1
229,946 + DZA65_RS01010 0.34 -0.4
229,946 + DZA65_RS01010 0.34 +0.6
229,946 + DZA65_RS01010 0.34 -1.2
229,946 + DZA65_RS01010 0.34 +0.0
229,946 + DZA65_RS01010 0.34 -0.3
229,946 + DZA65_RS01010 0.34 -0.2
229,946 + DZA65_RS01010 0.34 -0.5
229,946 + DZA65_RS01010 0.34 -1.2
229,946 + DZA65_RS01010 0.34 +0.1
229,946 + DZA65_RS01010 0.34 -1.0
229,946 + DZA65_RS01010 0.34 +0.0
229,946 + DZA65_RS01010 0.34 -0.1
229,946 + DZA65_RS01010 0.34 +0.2
229,946 + DZA65_RS01010 0.34 -1.1
229,946 + DZA65_RS01010 0.34 -0.7
229,946 + DZA65_RS01010 0.34 -1.0
229,946 + DZA65_RS01010 0.34 +0.1
229,946 + DZA65_RS01010 0.34 -0.7
229,946 + DZA65_RS01010 0.34 +0.6
229,946 + DZA65_RS01010 0.34 -1.4
229,946 + DZA65_RS01010 0.34 -0.4
229,946 + DZA65_RS01010 0.34 +0.2
229,946 + DZA65_RS01010 0.34 -1.3
229,946 + DZA65_RS01010 0.34 +0.0
229,946 + DZA65_RS01010 0.34 +0.2
229,947 - DZA65_RS01010 0.34 -0.2
229,947 - DZA65_RS01010 0.34 -0.7
229,947 - DZA65_RS01010 0.34 -1.4
229,947 - DZA65_RS01010 0.34 +0.3
229,947 - DZA65_RS01010 0.34 +0.4
229,947 - DZA65_RS01010 0.34 -0.6
229,947 - DZA65_RS01010 0.34 -0.8
229,947 - DZA65_RS01010 0.34 -2.0
229,947 - DZA65_RS01010 0.34 -1.0
229,947 - DZA65_RS01010 0.34 -0.2
229,947 - DZA65_RS01010 0.34 +0.4
229,947 - DZA65_RS01010 0.34 -0.2
229,947 - DZA65_RS01010 0.34 +0.2
229,947 - DZA65_RS01010 0.34 +0.3
229,947 - DZA65_RS01010 0.34 -0.1
229,947 - DZA65_RS01010 0.34 -0.6
230,023 + DZA65_RS01010 0.39 +0.5
230,023 + DZA65_RS01010 0.39 +1.5
230,023 + DZA65_RS01010 0.39 +0.0
230,023 + DZA65_RS01010 0.39 +0.6
230,023 + DZA65_RS01010 0.39 -0.2
230,024 - DZA65_RS01010 0.39 -1.2
230,024 - DZA65_RS01010 0.39 -1.4
230,024 - DZA65_RS01010 0.39 +1.5
230,057 + DZA65_RS01010 0.41 -0.5
230,057 + DZA65_RS01010 0.41 -1.2
230,057 + DZA65_RS01010 0.41 -0.2
230,057 + DZA65_RS01010 0.41 +0.0
230,057 + DZA65_RS01010 0.41 -0.1
230,057 + DZA65_RS01010 0.41 -0.1
230,057 + DZA65_RS01010 0.41 -0.7
230,057 + DZA65_RS01010 0.41 +0.7
230,057 + DZA65_RS01010 0.41 -0.9
230,058 - DZA65_RS01010 0.41 -1.1
230,058 - DZA65_RS01010 0.41 +0.3
230,058 - DZA65_RS01010 0.41 +1.5
230,058 - DZA65_RS01010 0.41 +0.2
230,079 + DZA65_RS01010 0.42 -0.4
230,079 + DZA65_RS01010 0.42 -0.7
230,079 + DZA65_RS01010 0.42 -0.6
230,079 + DZA65_RS01010 0.42 -0.2
230,079 + DZA65_RS01010 0.42 -0.6
230,079 + DZA65_RS01010 0.42 -0.3
230,079 + DZA65_RS01010 0.42 +0.4
230,079 + DZA65_RS01010 0.42 -0.6
230,079 + DZA65_RS01010 0.42 +0.2
230,080 - DZA65_RS01010 0.42 -4.0
230,080 - DZA65_RS01010 0.42 +0.4
230,080 - DZA65_RS01010 0.42 +0.9
230,080 - DZA65_RS01010 0.42 +0.0
230,080 - DZA65_RS01010 0.42 -1.1
230,186 + +0.6
230,186 + DZA65_RS01010 0.49 +0.3
230,186 + DZA65_RS01010 0.49 +0.1
230,186 + DZA65_RS01010 0.49 -0.3
230,186 + DZA65_RS01010 0.49 +0.2
230,186 + DZA65_RS01010 0.49 +0.2
230,186 + DZA65_RS01010 0.49 +0.0
230,187 - DZA65_RS01010 0.49 +0.0
230,187 - DZA65_RS01010 0.49 -0.3
230,187 - DZA65_RS01010 0.49 -1.1
230,187 - DZA65_RS01010 0.49 -0.3
230,187 - DZA65_RS01010 0.49 +0.3
230,251 + DZA65_RS01010 0.53 +0.6
230,252 - DZA65_RS01010 0.53 -0.1
230,252 - DZA65_RS01010 0.53 +0.1
230,252 - DZA65_RS01010 0.53 -0.2
230,252 - DZA65_RS01010 0.53 +0.8

Or see this region's nucleotide sequence