Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00990 and DZA65_RS00995 are separated by 31 nucleotides DZA65_RS00995 and DZA65_RS01000 are separated by 212 nucleotides DZA65_RS01000 and DZA65_RS01005 are separated by 49 nucleotides DZA65_RS01005 and DZA65_RS01010 are separated by 94 nucleotides
DZA65_RS00990: DZA65_RS00990 - porphobilinogen synthase, at 225,284 to 226,306
_RS00990
DZA65_RS00995: DZA65_RS00995 - transcription/translation regulatory transformer protein RfaH, at 226,338 to 226,826
_RS00995
DZA65_RS01000: DZA65_RS01000 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 227,039 to 228,526
_RS01000
DZA65_RS01005: DZA65_RS01005 - NAD(P)H-flavin reductase, at 228,576 to 229,277
_RS01005
DZA65_RS01010: DZA65_RS01010 - FAD-dependent oxidoreductase, at 229,372 to 231,045
_RS01010
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 226.310 kb on + strand at 226.310 kb on + strand at 226.310 kb on + strand at 226.311 kb on - strand at 226.311 kb on - strand at 226.311 kb on - strand at 226.311 kb on - strand at 226.311 kb on - strand at 226.311 kb on - strand at 226.311 kb on - strand at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.438 kb on + strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.439 kb on - strand, within DZA65_RS00995 at 226.442 kb on + strand, within DZA65_RS00995 at 226.442 kb on + strand, within DZA65_RS00995 at 226.443 kb on - strand, within DZA65_RS00995 at 226.479 kb on + strand, within DZA65_RS00995 at 226.480 kb on - strand, within DZA65_RS00995 at 226.514 kb on + strand, within DZA65_RS00995 at 226.514 kb on + strand, within DZA65_RS00995 at 226.515 kb on - strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.635 kb on + strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.636 kb on - strand, within DZA65_RS00995 at 226.666 kb on + strand, within DZA65_RS00995 at 226.666 kb on + strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.667 kb on - strand, within DZA65_RS00995 at 226.711 kb on - strand, within DZA65_RS00995 at 226.783 kb on - strand at 226.804 kb on + strand at 226.804 kb on + strand at 226.804 kb on + strand at 226.805 kb on - strand at 226.809 kb on + strand at 226.809 kb on + strand at 226.809 kb on + strand at 226.809 kb on + strand at 226.809 kb on + strand at 226.809 kb on + strand at 226.810 kb on - strand at 226.810 kb on - strand at 226.810 kb on - strand at 226.810 kb on - strand at 226.810 kb on - strand at 226.810 kb on - strand at 226.813 kb on + strand at 226.814 kb on - strand at 226.826 kb on + strand at 226.827 kb on - strand at 226.827 kb on - strand at 226.876 kb on + strand at 226.877 kb on - strand at 226.877 kb on - strand at 226.963 kb on + strand at 226.963 kb on + strand at 226.964 kb on - strand at 226.964 kb on - strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.001 kb on + strand at 227.002 kb on - strand at 227.002 kb on - strand at 227.003 kb on + strand at 227.003 kb on + strand at 227.003 kb on + strand at 227.003 kb on + strand at 227.003 kb on + strand at 227.003 kb on + strand at 228.478 kb on + strand at 228.534 kb on + strand at 228.562 kb on + strand at 228.562 kb on + strand at 228.593 kb on + strand at 228.593 kb on + strand at 228.599 kb on - strand at 228.792 kb on + strand, within DZA65_RS01005 at 228.924 kb on + strand, within DZA65_RS01005 at 228.928 kb on + strand, within DZA65_RS01005 at 228.928 kb on + strand, within DZA65_RS01005 at 228.976 kb on + strand, within DZA65_RS01005 at 228.976 kb on + strand, within DZA65_RS01005 at 228.977 kb on - strand, within DZA65_RS01005 at 229.167 kb on - strand, within DZA65_RS01005 at 229.170 kb on + strand, within DZA65_RS01005 at 229.171 kb on - strand, within DZA65_RS01005 at 229.171 kb on - strand, within DZA65_RS01005 at 229.171 kb on - strand, within DZA65_RS01005 at 229.171 kb on - strand, within DZA65_RS01005 at 229.251 kb on + strand at 229.272 kb on - strand at 229.272 kb on - strand at 229.328 kb on - strand at 229.330 kb on - strand at 229.360 kb on + strand at 229.361 kb on - strand at 229.373 kb on + strand at 229.373 kb on + strand at 229.374 kb on - strand at 229.374 kb on - strand at 229.374 kb on - strand at 229.402 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 226,310 + -0.2 226,310 + -0.6 226,310 + -0.6 226,311 - -0.6 226,311 - -0.3 226,311 - +0.0 226,311 - +0.0 226,311 - +0.8 226,311 - +0.1 226,311 - -1.1 226,438 + DZA65_RS00995 0.20 -1.6 226,438 + DZA65_RS00995 0.20 -1.0 226,438 + DZA65_RS00995 0.20 +1.0 226,438 + DZA65_RS00995 0.20 +0.6 226,438 + DZA65_RS00995 0.20 -0.1 226,438 + DZA65_RS00995 0.20 +0.6 226,438 + DZA65_RS00995 0.20 -0.0 226,438 + DZA65_RS00995 0.20 -0.4 226,438 + DZA65_RS00995 0.20 -0.8 226,438 + DZA65_RS00995 0.20 -1.4 226,438 + DZA65_RS00995 0.20 +0.1 226,438 + DZA65_RS00995 0.20 +0.0 226,438 + DZA65_RS00995 0.20 -0.6 226,438 + DZA65_RS00995 0.20 +0.1 226,438 + DZA65_RS00995 0.20 +1.2 226,438 + DZA65_RS00995 0.20 -0.5 226,438 + DZA65_RS00995 0.20 +0.0 226,438 + DZA65_RS00995 0.20 -0.3 226,439 - DZA65_RS00995 0.21 +0.1 226,439 - DZA65_RS00995 0.21 -1.4 226,439 - DZA65_RS00995 0.21 -1.0 226,439 - DZA65_RS00995 0.21 +0.2 226,439 - DZA65_RS00995 0.21 -1.4 226,439 - DZA65_RS00995 0.21 -1.0 226,439 - DZA65_RS00995 0.21 +2.4 226,439 - DZA65_RS00995 0.21 -0.4 226,439 - DZA65_RS00995 0.21 -0.6 226,439 - DZA65_RS00995 0.21 -0.1 226,439 - DZA65_RS00995 0.21 +0.0 226,442 + DZA65_RS00995 0.21 +1.0 226,442 + DZA65_RS00995 0.21 -0.1 226,443 - DZA65_RS00995 0.21 +2.0 226,479 + DZA65_RS00995 0.29 +0.0 226,480 - DZA65_RS00995 0.29 -0.0 226,514 + DZA65_RS00995 0.36 -0.0 226,514 + DZA65_RS00995 0.36 -0.4 226,515 - DZA65_RS00995 0.36 +0.5 226,635 + DZA65_RS00995 0.61 -0.2 226,635 + DZA65_RS00995 0.61 -0.5 226,635 + DZA65_RS00995 0.61 +0.9 226,635 + DZA65_RS00995 0.61 -0.4 226,635 + DZA65_RS00995 0.61 +1.2 226,635 + DZA65_RS00995 0.61 +0.6 226,635 + DZA65_RS00995 0.61 -0.1 226,635 + DZA65_RS00995 0.61 -0.3 226,635 + DZA65_RS00995 0.61 +0.2 226,635 + DZA65_RS00995 0.61 -0.4 226,635 + DZA65_RS00995 0.61 +1.1 226,635 + DZA65_RS00995 0.61 -0.4 226,635 + DZA65_RS00995 0.61 -0.1 226,636 - DZA65_RS00995 0.61 +1.0 226,636 - DZA65_RS00995 0.61 +0.9 226,636 - DZA65_RS00995 0.61 -0.1 226,636 - DZA65_RS00995 0.61 -0.5 226,636 - DZA65_RS00995 0.61 -0.9 226,636 - DZA65_RS00995 0.61 +0.0 226,636 - DZA65_RS00995 0.61 +0.6 226,636 - DZA65_RS00995 0.61 -0.2 226,636 - DZA65_RS00995 0.61 -0.3 226,636 - DZA65_RS00995 0.61 -0.2 226,636 - DZA65_RS00995 0.61 +0.3 226,636 - DZA65_RS00995 0.61 -0.4 226,636 - DZA65_RS00995 0.61 +1.6 226,636 - DZA65_RS00995 0.61 +0.0 226,636 - DZA65_RS00995 0.61 +0.8 226,666 + DZA65_RS00995 0.67 -0.2 226,666 + DZA65_RS00995 0.67 -1.0 226,667 - DZA65_RS00995 0.67 +0.0 226,667 - DZA65_RS00995 0.67 +0.6 226,667 - DZA65_RS00995 0.67 +0.2 226,667 - DZA65_RS00995 0.67 -1.5 226,667 - DZA65_RS00995 0.67 -0.6 226,667 - DZA65_RS00995 0.67 -0.3 226,667 - DZA65_RS00995 0.67 +0.9 226,667 - DZA65_RS00995 0.67 -0.4 226,711 - DZA65_RS00995 0.76 +0.4 226,783 - -0.3 226,804 + -1.4 226,804 + +0.4 226,804 + -0.2 226,805 - -0.8 226,809 + +0.6 226,809 + -0.1 226,809 + +0.5 226,809 + +0.4 226,809 + +1.5 226,809 + +1.0 226,810 - +0.0 226,810 - +0.5 226,810 - +0.3 226,810 - -0.4 226,810 - +1.6 226,810 - -0.4 226,813 + -0.6 226,814 - +1.2 226,826 + +0.9 226,827 - -0.1 226,827 - -0.5 226,876 + -0.8 226,877 - +0.1 226,877 - -0.5 226,963 + +0.8 226,963 + -0.9 226,964 - +1.4 226,964 - -0.4 227,001 + -0.7 227,001 + -0.6 227,001 + +0.3 227,001 + +0.1 227,001 + -0.4 227,001 + +1.4 227,001 + -1.4 227,001 + +0.1 227,001 + -0.7 227,002 - +0.0 227,002 - +0.3 227,003 + +2.2 227,003 + +0.5 227,003 + +1.4 227,003 + +0.6 227,003 + -1.0 227,003 + -1.3 228,478 + +2.2 228,534 + -0.1 228,562 + +1.3 228,562 + +0.4 228,593 + -1.2 228,593 + +1.2 228,599 - -0.7 228,792 + DZA65_RS01005 0.31 -0.4 228,924 + DZA65_RS01005 0.50 -1.7 228,928 + DZA65_RS01005 0.50 -0.2 228,928 + DZA65_RS01005 0.50 -2.4 228,976 + DZA65_RS01005 0.57 -1.6 228,976 + DZA65_RS01005 0.57 -1.3 228,977 - DZA65_RS01005 0.57 -0.2 229,167 - DZA65_RS01005 0.84 -1.3 229,170 + DZA65_RS01005 0.85 -1.6 229,171 - DZA65_RS01005 0.85 -1.8 229,171 - DZA65_RS01005 0.85 -0.7 229,171 - DZA65_RS01005 0.85 -1.6 229,171 - DZA65_RS01005 0.85 -0.4 229,251 + +1.0 229,272 - -1.5 229,272 - -2.8 229,328 - +0.7 229,330 - +0.5 229,360 + -0.6 229,361 - +0.2 229,373 + +0.4 229,373 + +0.3 229,374 - -0.4 229,374 - -1.8 229,374 - -0.3 229,402 - -0.1
Or see this region's nucleotide sequence