Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00965 and DZA65_RS00970 are separated by 80 nucleotides DZA65_RS00970 and DZA65_RS00975 are separated by 3 nucleotides DZA65_RS00975 and DZA65_RS00980 are separated by 3 nucleotides
DZA65_RS00965: DZA65_RS00965 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 221,054 to 222,691
_RS00965
DZA65_RS00970: DZA65_RS00970 - twin-arginine translocase subunit TatA, at 222,772 to 223,026
_RS00970
DZA65_RS00975: DZA65_RS00975 - Sec-independent protein translocase subunit TatB, at 223,030 to 223,602
_RS00975
DZA65_RS00980: DZA65_RS00980 - Sec-independent protein translocase subunit TatC, at 223,606 to 224,373
_RS00980
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.702 kb on + strand at 222.702 kb on + strand at 222.703 kb on - strand at 222.755 kb on - strand at 222.762 kb on + strand at 222.762 kb on + strand at 222.762 kb on + strand at 222.762 kb on + strand at 222.762 kb on + strand at 222.763 kb on - strand at 222.772 kb on - strand at 222.780 kb on + strand at 222.781 kb on - strand at 222.783 kb on + strand at 222.783 kb on + strand at 222.783 kb on + strand at 222.783 kb on + strand at 222.783 kb on + strand at 222.783 kb on + strand at 222.784 kb on - strand at 222.784 kb on - strand at 222.784 kb on - strand at 222.784 kb on - strand at 222.786 kb on + strand at 222.786 kb on + strand at 222.786 kb on + strand at 222.787 kb on - strand at 222.818 kb on + strand, within DZA65_RS00970 at 222.818 kb on + strand, within DZA65_RS00970 at 222.819 kb on - strand, within DZA65_RS00970 at 222.819 kb on - strand, within DZA65_RS00970 at 222.819 kb on - strand, within DZA65_RS00970 at 222.821 kb on + strand, within DZA65_RS00970 at 222.821 kb on + strand at 222.822 kb on - strand, within DZA65_RS00970 at 222.822 kb on - strand, within DZA65_RS00970 at 222.935 kb on + strand, within DZA65_RS00970 at 222.936 kb on - strand, within DZA65_RS00970 at 222.936 kb on - strand, within DZA65_RS00970 at 223.011 kb on + strand at 223.012 kb on - strand at 223.024 kb on + strand at 223.025 kb on - strand at 223.025 kb on - strand at 223.025 kb on - strand at 223.025 kb on - strand at 223.473 kb on + strand, within DZA65_RS00975 at 223.473 kb on + strand, within DZA65_RS00975 at 223.474 kb on - strand, within DZA65_RS00975 at 223.568 kb on + strand at 223.568 kb on + strand at 223.569 kb on - strand at 223.569 kb on - strand at 223.569 kb on - strand at 223.600 kb on + strand at 223.600 kb on + strand at 223.605 kb on + strand at 223.605 kb on + strand at 223.605 kb on + strand at 223.605 kb on + strand at 223.605 kb on + strand at 223.606 kb on - strand at 223.606 kb on - strand at 223.671 kb on + strand at 223.671 kb on + strand at 223.671 kb on + strand at 223.672 kb on - strand at 223.672 kb on - strand at 223.677 kb on + strand at 223.677 kb on + strand at 223.677 kb on + strand at 223.678 kb on - strand at 223.711 kb on + strand, within DZA65_RS00980 at 223.712 kb on - strand, within DZA65_RS00980 at 223.729 kb on + strand, within DZA65_RS00980 at 223.729 kb on + strand at 223.729 kb on + strand, within DZA65_RS00980 at 223.780 kb on - strand, within DZA65_RS00980 at 223.870 kb on + strand, within DZA65_RS00980 at 223.870 kb on + strand, within DZA65_RS00980 at 223.871 kb on - strand, within DZA65_RS00980 at 223.871 kb on - strand, within DZA65_RS00980 at 223.871 kb on - strand, within DZA65_RS00980 at 223.871 kb on - strand, within DZA65_RS00980 at 223.871 kb on - strand, within DZA65_RS00980 at 223.903 kb on + strand, within DZA65_RS00980 at 223.903 kb on + strand, within DZA65_RS00980 at 223.903 kb on + strand, within DZA65_RS00980 at 223.903 kb on + strand, within DZA65_RS00980 at 223.904 kb on - strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.960 kb on + strand, within DZA65_RS00980 at 223.961 kb on - strand, within DZA65_RS00980 at 223.961 kb on - strand, within DZA65_RS00980 at 223.961 kb on - strand, within DZA65_RS00980 at 223.961 kb on - strand, within DZA65_RS00980 at 223.961 kb on - strand, within DZA65_RS00980 at 223.961 kb on - strand, within DZA65_RS00980 at 223.962 kb on + strand, within DZA65_RS00980 at 223.981 kb on + strand, within DZA65_RS00980 at 224.007 kb on + strand, within DZA65_RS00980
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 222,702 + -2.0 222,702 + -1.0 222,703 - +0.9 222,755 - -1.4 222,762 + -0.8 222,762 + +0.0 222,762 + -0.1 222,762 + +0.3 222,762 + -0.9 222,763 - +0.0 222,772 - -0.5 222,780 + -0.5 222,781 - -0.9 222,783 + -0.4 222,783 + -0.4 222,783 + -0.9 222,783 + -1.1 222,783 + +0.4 222,783 + -1.3 222,784 - -0.4 222,784 - -0.6 222,784 - -0.4 222,784 - -0.4 222,786 + -0.8 222,786 + -0.5 222,786 + -1.2 222,787 - +0.2 222,818 + DZA65_RS00970 0.18 -0.4 222,818 + DZA65_RS00970 0.18 -0.8 222,819 - DZA65_RS00970 0.18 -0.8 222,819 - DZA65_RS00970 0.18 -1.2 222,819 - DZA65_RS00970 0.18 +0.0 222,821 + DZA65_RS00970 0.19 +0.5 222,821 + +0.0 222,822 - DZA65_RS00970 0.20 -1.1 222,822 - DZA65_RS00970 0.20 -0.9 222,935 + DZA65_RS00970 0.64 +0.4 222,936 - DZA65_RS00970 0.64 -0.9 222,936 - DZA65_RS00970 0.64 -1.4 223,011 + +0.0 223,012 - +1.4 223,024 + +0.0 223,025 - -2.0 223,025 - +0.3 223,025 - -0.7 223,025 - -1.2 223,473 + DZA65_RS00975 0.77 -0.7 223,473 + DZA65_RS00975 0.77 -0.1 223,474 - DZA65_RS00975 0.77 +0.5 223,568 + +0.3 223,568 + -0.5 223,569 - -1.8 223,569 - +0.8 223,569 - +0.0 223,600 + +0.0 223,600 + +1.0 223,605 + +0.1 223,605 + -1.7 223,605 + -1.4 223,605 + +1.0 223,605 + -0.9 223,606 - -1.9 223,606 - -0.3 223,671 + +0.6 223,671 + -0.8 223,671 + +0.5 223,672 - -0.8 223,672 - -0.4 223,677 + -0.7 223,677 + +0.2 223,677 + +2.0 223,678 - -1.2 223,711 + DZA65_RS00980 0.14 -0.3 223,712 - DZA65_RS00980 0.14 -0.5 223,729 + DZA65_RS00980 0.16 -0.7 223,729 + -1.0 223,729 + DZA65_RS00980 0.16 -1.5 223,780 - DZA65_RS00980 0.23 +0.3 223,870 + DZA65_RS00980 0.34 +0.2 223,870 + DZA65_RS00980 0.34 -0.7 223,871 - DZA65_RS00980 0.35 +1.5 223,871 - DZA65_RS00980 0.35 -0.3 223,871 - DZA65_RS00980 0.35 -1.3 223,871 - DZA65_RS00980 0.35 -0.1 223,871 - DZA65_RS00980 0.35 +0.0 223,903 + DZA65_RS00980 0.39 -0.1 223,903 + DZA65_RS00980 0.39 -0.7 223,903 + DZA65_RS00980 0.39 +0.5 223,903 + DZA65_RS00980 0.39 -0.4 223,904 - DZA65_RS00980 0.39 -0.6 223,960 + DZA65_RS00980 0.46 +1.8 223,960 + DZA65_RS00980 0.46 -0.2 223,960 + DZA65_RS00980 0.46 -0.7 223,960 + DZA65_RS00980 0.46 -0.6 223,960 + DZA65_RS00980 0.46 +0.4 223,960 + DZA65_RS00980 0.46 -0.6 223,960 + DZA65_RS00980 0.46 +0.0 223,960 + DZA65_RS00980 0.46 +0.0 223,960 + DZA65_RS00980 0.46 -1.4 223,960 + DZA65_RS00980 0.46 -0.3 223,960 + DZA65_RS00980 0.46 -0.5 223,960 + DZA65_RS00980 0.46 +0.2 223,960 + DZA65_RS00980 0.46 -0.0 223,961 - DZA65_RS00980 0.46 -0.0 223,961 - DZA65_RS00980 0.46 -0.5 223,961 - DZA65_RS00980 0.46 -0.4 223,961 - DZA65_RS00980 0.46 +0.0 223,961 - DZA65_RS00980 0.46 -1.3 223,961 - DZA65_RS00980 0.46 +0.0 223,962 + DZA65_RS00980 0.46 +0.3 223,981 + DZA65_RS00980 0.49 -0.7 224,007 + DZA65_RS00980 0.52 +0.1
Or see this region's nucleotide sequence