Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00880 and DZA65_RS00885 are separated by 289 nucleotides DZA65_RS00885 and DZA65_RS00890 are separated by 260 nucleotides
DZA65_RS00880: DZA65_RS00880 - dienelactone hydrolase family protein, at 197,142 to 197,969
_RS00880
DZA65_RS00885: DZA65_RS00885 - uridine phosphorylase, at 198,259 to 199,020
_RS00885
DZA65_RS00890: DZA65_RS00890 - tyrosine-protein phosphatase, at 199,281 to 200,063
_RS00890
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.482 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.647 kb on + strand, within DZA65_RS00880 at 197.648 kb on - strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.675 kb on - strand, within DZA65_RS00880 at 197.691 kb on - strand, within DZA65_RS00880 at 197.698 kb on + strand, within DZA65_RS00880 at 197.699 kb on - strand, within DZA65_RS00880 at 197.708 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.764 kb on - strand, within DZA65_RS00880 at 197.814 kb on - strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.953 kb on - strand at 197.982 kb on - strand at 197.982 kb on - strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.047 kb on - strand at 198.051 kb on + strand at 198.052 kb on - strand at 198.052 kb on - strand at 198.106 kb on + strand at 198.117 kb on + strand at 198.118 kb on - strand at 198.154 kb on + strand at 198.158 kb on + strand at 198.158 kb on + strand at 198.169 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.219 kb on - strand at 198.231 kb on + strand at 198.231 kb on + strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.269 kb on + strand at 198.269 kb on + strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.439 kb on - strand, within DZA65_RS00885 at 198.471 kb on + strand, within DZA65_RS00885 at 198.472 kb on - strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.732 kb on + strand, within DZA65_RS00885 at 198.758 kb on - strand, within DZA65_RS00885 at 198.758 kb on - strand at 198.766 kb on + strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.802 kb on - strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.943 kb on - strand, within DZA65_RS00885 at 198.948 kb on + strand at 198.948 kb on + strand at 198.949 kb on - strand at 199.008 kb on - strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.088 kb on - strand at 199.137 kb on + strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.143 kb on + strand at 199.143 kb on + strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.164 kb on + strand at 199.165 kb on - strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.218 kb on + strand at 199.219 kb on - strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.237 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.264 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.269 kb on + strand at 199.269 kb on - strand at 199.269 kb on - strand at 199.280 kb on + strand at 199.280 kb on + strand at 199.281 kb on - strand at 199.298 kb on - strand at 199.298 kb on - strand at 199.349 kb on - strand at 199.349 kb on - strand at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.537 kb on - strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.657 kb on + strand, within DZA65_RS00890 at 199.677 kb on + strand, within DZA65_RS00890 at 199.754 kb on + strand, within DZA65_RS00890 at 199.821 kb on + strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.992 kb on - strand at 200.010 kb on + strand at 200.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 197,482 + DZA65_RS00880 0.41 +0.1 197,589 + DZA65_RS00880 0.54 -0.6 197,589 + DZA65_RS00880 0.54 -0.3 197,589 + DZA65_RS00880 0.54 +1.0 197,589 + DZA65_RS00880 0.54 -0.3 197,590 - DZA65_RS00880 0.54 -0.2 197,590 - DZA65_RS00880 0.54 -0.6 197,590 - DZA65_RS00880 0.54 -0.8 197,590 - DZA65_RS00880 0.54 +0.9 197,647 + DZA65_RS00880 0.61 -1.0 197,648 - DZA65_RS00880 0.61 -0.7 197,674 + DZA65_RS00880 0.64 -0.3 197,674 + DZA65_RS00880 0.64 +0.8 197,674 + DZA65_RS00880 0.64 -0.4 197,674 + DZA65_RS00880 0.64 -0.3 197,674 + DZA65_RS00880 0.64 +0.0 197,675 - DZA65_RS00880 0.64 +0.2 197,691 - DZA65_RS00880 0.66 -0.3 197,698 + DZA65_RS00880 0.67 -1.0 197,699 - DZA65_RS00880 0.67 +0.8 197,708 + DZA65_RS00880 0.68 -2.1 197,745 + DZA65_RS00880 0.73 +0.1 197,745 + DZA65_RS00880 0.73 +0.6 197,746 - DZA65_RS00880 0.73 -0.6 197,746 - DZA65_RS00880 0.73 +0.1 197,746 - DZA65_RS00880 0.73 +0.3 197,746 - DZA65_RS00880 0.73 -0.7 197,746 - DZA65_RS00880 0.73 +0.6 197,746 - DZA65_RS00880 0.73 +0.2 197,746 - DZA65_RS00880 0.73 -0.9 197,763 + DZA65_RS00880 0.75 -0.5 197,763 + DZA65_RS00880 0.75 +0.2 197,764 - DZA65_RS00880 0.75 +0.2 197,814 - DZA65_RS00880 0.81 -1.0 197,815 + DZA65_RS00880 0.81 -1.0 197,815 + DZA65_RS00880 0.81 -0.0 197,815 + DZA65_RS00880 0.81 -2.2 197,815 + DZA65_RS00880 0.81 +1.6 197,815 + DZA65_RS00880 0.81 -0.4 197,815 + DZA65_RS00880 0.81 -0.2 197,815 + DZA65_RS00880 0.81 -0.5 197,815 + DZA65_RS00880 0.81 -0.8 197,816 - DZA65_RS00880 0.81 +0.7 197,816 - DZA65_RS00880 0.81 -0.5 197,816 - DZA65_RS00880 0.81 -0.1 197,816 - DZA65_RS00880 0.81 -0.8 197,816 - DZA65_RS00880 0.81 +1.3 197,816 - DZA65_RS00880 0.81 -0.2 197,816 - DZA65_RS00880 0.81 -0.5 197,816 - DZA65_RS00880 0.81 -0.2 197,816 - DZA65_RS00880 0.81 -0.2 197,953 - +0.8 197,982 - -2.1 197,982 - +0.2 198,046 + -0.4 198,046 + -0.1 198,046 + -2.0 198,047 - -0.2 198,051 + +0.8 198,052 - +0.5 198,052 - +0.4 198,106 + -1.4 198,117 + +0.7 198,118 - -0.6 198,154 + -0.5 198,158 + -0.8 198,158 + -0.5 198,169 + +1.3 198,218 + -1.7 198,218 + +1.0 198,218 + +0.6 198,219 - -0.7 198,231 + -0.4 198,231 + +0.0 198,232 - -1.7 198,232 - -0.8 198,232 - -0.5 198,258 + +0.4 198,259 - +0.0 198,269 + -1.1 198,269 + +1.1 198,270 - +0.5 198,270 - +0.1 198,270 - -1.2 198,270 - +0.4 198,270 - -0.7 198,270 - -0.7 198,439 - DZA65_RS00885 0.24 -0.4 198,471 + DZA65_RS00885 0.28 -0.8 198,472 - DZA65_RS00885 0.28 -0.7 198,485 + DZA65_RS00885 0.30 -2.3 198,485 + DZA65_RS00885 0.30 -2.1 198,514 - DZA65_RS00885 0.33 +0.2 198,514 - DZA65_RS00885 0.33 +0.8 198,514 - DZA65_RS00885 0.33 -1.0 198,660 + DZA65_RS00885 0.53 -1.2 198,660 + DZA65_RS00885 0.53 -0.4 198,661 - DZA65_RS00885 0.53 -0.2 198,661 - DZA65_RS00885 0.53 +0.3 198,732 + DZA65_RS00885 0.62 -0.3 198,758 - DZA65_RS00885 0.65 -1.5 198,758 - -0.4 198,766 + DZA65_RS00885 0.67 -0.4 198,767 - DZA65_RS00885 0.67 +1.0 198,767 - DZA65_RS00885 0.67 -0.8 198,801 + DZA65_RS00885 0.71 -0.4 198,801 + DZA65_RS00885 0.71 +0.6 198,802 - DZA65_RS00885 0.71 +0.9 198,835 + DZA65_RS00885 0.76 -0.8 198,835 + DZA65_RS00885 0.76 -0.4 198,835 + DZA65_RS00885 0.76 -1.2 198,836 - DZA65_RS00885 0.76 -1.4 198,836 - DZA65_RS00885 0.76 -1.0 198,836 - DZA65_RS00885 0.76 +0.6 198,921 + DZA65_RS00885 0.87 -0.7 198,921 + DZA65_RS00885 0.87 -0.2 198,943 - DZA65_RS00885 0.90 +0.6 198,948 + +1.6 198,948 + -0.9 198,949 - -0.2 199,008 - +0.8 199,087 + +0.4 199,087 + +0.8 199,088 - +1.0 199,088 - -2.8 199,137 + +0.0 199,138 - -1.0 199,138 - +0.4 199,138 - -0.1 199,143 + +1.0 199,143 + +0.6 199,144 - -0.2 199,144 - +0.0 199,144 - -0.1 199,144 - +0.3 199,144 - +0.6 199,164 + -0.2 199,165 - +0.6 199,167 + -1.4 199,167 + -1.4 199,167 + -1.0 199,167 + +0.3 199,167 + -1.7 199,168 - -0.4 199,168 - +0.8 199,168 - -0.7 199,168 - +0.4 199,168 - -0.7 199,168 - -2.1 199,168 - -1.4 199,168 - +1.0 199,168 - -0.4 199,199 + +0.4 199,199 + -0.5 199,199 + -1.0 199,199 + -0.0 199,200 - +0.6 199,200 - +0.6 199,200 - -0.3 199,200 - -1.0 199,218 + -1.0 199,219 - +0.3 199,222 + -1.2 199,222 + -0.3 199,222 + +0.9 199,222 + +2.2 199,222 + -0.1 199,222 + +0.5 199,222 + +0.9 199,222 + +0.2 199,223 - +0.8 199,223 - -1.0 199,223 - +0.6 199,223 - -0.4 199,223 - -0.3 199,223 - -0.3 199,223 - -0.7 199,223 - -0.9 199,223 - +0.1 199,223 - +0.0 199,223 - +0.2 199,237 - +0.9 199,251 - -0.4 199,251 - +0.0 199,251 - -1.4 199,264 + -2.1 199,268 + -2.1 199,268 + -2.2 199,268 + +0.0 199,268 + +1.6 199,269 + +0.2 199,269 - -1.4 199,269 - +0.5 199,280 + +0.3 199,280 + -0.1 199,281 - +0.2 199,298 - -0.4 199,298 - -0.8 199,349 - +0.8 199,349 - +0.3 199,423 + DZA65_RS00890 0.18 -0.3 199,423 + DZA65_RS00890 0.18 +0.3 199,423 + DZA65_RS00890 0.18 -0.4 199,423 + DZA65_RS00890 0.18 -1.2 199,423 + DZA65_RS00890 0.18 -0.5 199,423 + DZA65_RS00890 0.18 -0.5 199,424 - DZA65_RS00890 0.18 +2.2 199,424 - DZA65_RS00890 0.18 -0.1 199,424 - DZA65_RS00890 0.18 +0.2 199,424 - DZA65_RS00890 0.18 +0.0 199,454 + DZA65_RS00890 0.22 -0.3 199,454 + DZA65_RS00890 0.22 -0.3 199,537 - DZA65_RS00890 0.33 +0.2 199,634 + DZA65_RS00890 0.45 -0.5 199,634 + DZA65_RS00890 0.45 -1.1 199,634 + DZA65_RS00890 0.45 -0.3 199,634 + DZA65_RS00890 0.45 -1.2 199,635 - DZA65_RS00890 0.45 -2.0 199,635 - DZA65_RS00890 0.45 -0.5 199,635 - DZA65_RS00890 0.45 +0.0 199,635 - DZA65_RS00890 0.45 +0.3 199,635 - DZA65_RS00890 0.45 +0.7 199,657 + DZA65_RS00890 0.48 +0.6 199,677 + DZA65_RS00890 0.51 -0.7 199,754 + DZA65_RS00890 0.60 -1.0 199,821 + DZA65_RS00890 0.69 +0.5 199,822 - DZA65_RS00890 0.69 +0.5 199,822 - DZA65_RS00890 0.69 -0.8 199,992 - -0.3 200,010 + -0.3 200,011 - -1.9
Or see this region's nucleotide sequence