Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00730 and DZA65_RS00735 are separated by 112 nucleotides DZA65_RS00735 and DZA65_RS00740 are separated by 48 nucleotides DZA65_RS00740 and DZA65_RS00745 are separated by 108 nucleotides DZA65_RS00745 and DZA65_RS00750 overlap by 32 nucleotides
DZA65_RS00730: DZA65_RS00730 - ribonuclease PH, at 167,772 to 168,488
_RS00730
DZA65_RS00735: DZA65_RS00735 - orotate phosphoribosyltransferase, at 168,601 to 169,242
_RS00735
DZA65_RS00740: DZA65_RS00740 - nucleoid occlusion factor SlmA, at 169,291 to 169,887
_RS00740
DZA65_RS00745: DZA65_RS00745 - dUTP diphosphatase, at 169,996 to 170,454
_RS00745
DZA65_RS00750: DZA65_RS00750 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 170,423 to 171,622
_RS00750
Position (kb) 169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.300 kb on + strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.301 kb on - strand, within DZA65_RS00730 at 168.486 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.522 kb on + strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.523 kb on - strand at 168.524 kb on + strand at 168.538 kb on + strand at 168.539 kb on - strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.543 kb on + strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.544 kb on - strand at 168.586 kb on - strand at 168.611 kb on - strand at 168.611 kb on - strand at 168.650 kb on + strand at 168.669 kb on + strand, within DZA65_RS00735 at 168.669 kb on + strand, within DZA65_RS00735 at 168.687 kb on + strand, within DZA65_RS00735 at 168.688 kb on - strand, within DZA65_RS00735 at 168.697 kb on + strand, within DZA65_RS00735 at 168.720 kb on + strand, within DZA65_RS00735 at 168.720 kb on + strand, within DZA65_RS00735 at 168.720 kb on + strand, within DZA65_RS00735 at 168.721 kb on - strand, within DZA65_RS00735 at 168.721 kb on - strand, within DZA65_RS00735 at 168.721 kb on - strand, within DZA65_RS00735 at 168.723 kb on + strand, within DZA65_RS00735 at 168.723 kb on + strand, within DZA65_RS00735 at 168.758 kb on - strand, within DZA65_RS00735 at 168.758 kb on - strand, within DZA65_RS00735 at 168.814 kb on + strand, within DZA65_RS00735 at 168.814 kb on + strand, within DZA65_RS00735 at 168.815 kb on - strand, within DZA65_RS00735 at 168.883 kb on + strand, within DZA65_RS00735 at 169.120 kb on + strand, within DZA65_RS00735 at 169.260 kb on - strand at 169.292 kb on + strand at 169.293 kb on - strand at 169.472 kb on - strand, within DZA65_RS00740 at 169.656 kb on + strand, within DZA65_RS00740 at 169.656 kb on + strand, within DZA65_RS00740 at 169.657 kb on - strand, within DZA65_RS00740 at 169.657 kb on - strand, within DZA65_RS00740 at 169.657 kb on - strand, within DZA65_RS00740 at 169.870 kb on - strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.963 kb on + strand at 169.964 kb on - strand at 169.964 kb on - strand at 169.964 kb on - strand at 169.965 kb on + strand at 169.965 kb on + strand at 169.966 kb on - strand at 169.966 kb on - strand at 169.966 kb on - strand at 169.966 kb on - strand at 169.966 kb on - strand at 169.995 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 168,300 + DZA65_RS00730 0.74 +0.4 168,300 + DZA65_RS00730 0.74 +0.9 168,300 + DZA65_RS00730 0.74 +1.6 168,300 + DZA65_RS00730 0.74 -0.9 168,300 + DZA65_RS00730 0.74 +0.2 168,300 + DZA65_RS00730 0.74 -1.4 168,301 - DZA65_RS00730 0.74 -0.5 168,301 - DZA65_RS00730 0.74 -1.1 168,486 + +1.6 168,522 + -0.4 168,522 + -2.4 168,522 + +0.3 168,522 + +0.1 168,523 - -0.4 168,523 - -0.7 168,523 - -0.3 168,524 + -0.4 168,538 + -0.2 168,539 - +0.8 168,543 + -1.7 168,543 + -0.2 168,543 + +0.0 168,543 + +0.1 168,543 + -0.0 168,543 + -0.2 168,543 + +3.0 168,543 + +0.6 168,543 + +0.1 168,543 + +1.2 168,543 + -0.5 168,543 + -0.3 168,543 + +1.2 168,543 + -0.2 168,543 + +1.6 168,543 + -0.4 168,543 + -0.1 168,543 + -0.6 168,543 + +0.3 168,543 + +0.3 168,543 + -0.0 168,543 + -1.1 168,543 + +1.3 168,543 + -0.2 168,543 + +0.8 168,544 - +0.6 168,544 - +0.0 168,544 - +0.5 168,544 - -0.5 168,544 - +0.6 168,544 - -0.0 168,544 - +0.9 168,544 - -0.7 168,544 - -1.9 168,544 - -0.1 168,544 - -0.6 168,544 - +0.5 168,544 - -0.7 168,544 - +0.6 168,544 - -1.0 168,544 - +0.5 168,544 - +0.8 168,544 - +1.6 168,544 - -1.0 168,544 - +0.9 168,544 - +0.1 168,544 - +1.1 168,544 - -0.7 168,544 - -0.5 168,544 - -0.8 168,544 - +0.1 168,544 - -1.4 168,544 - -0.2 168,544 - +0.3 168,544 - +0.6 168,586 - -1.0 168,611 - -0.7 168,611 - -0.8 168,650 + +0.2 168,669 + DZA65_RS00735 0.11 -0.4 168,669 + DZA65_RS00735 0.11 -0.9 168,687 + DZA65_RS00735 0.13 +0.6 168,688 - DZA65_RS00735 0.14 -0.4 168,697 + DZA65_RS00735 0.15 -0.1 168,720 + DZA65_RS00735 0.19 +0.3 168,720 + DZA65_RS00735 0.19 -1.5 168,720 + DZA65_RS00735 0.19 +0.3 168,721 - DZA65_RS00735 0.19 +0.8 168,721 - DZA65_RS00735 0.19 +0.5 168,721 - DZA65_RS00735 0.19 -0.8 168,723 + DZA65_RS00735 0.19 -0.4 168,723 + DZA65_RS00735 0.19 -0.8 168,758 - DZA65_RS00735 0.24 -0.2 168,758 - DZA65_RS00735 0.24 +0.6 168,814 + DZA65_RS00735 0.33 -0.4 168,814 + DZA65_RS00735 0.33 -2.2 168,815 - DZA65_RS00735 0.33 -1.1 168,883 + DZA65_RS00735 0.44 -0.4 169,120 + DZA65_RS00735 0.81 +0.3 169,260 - -0.2 169,292 + -0.7 169,293 - +1.1 169,472 - DZA65_RS00740 0.30 -0.4 169,656 + DZA65_RS00740 0.61 -0.9 169,656 + DZA65_RS00740 0.61 +0.1 169,657 - DZA65_RS00740 0.61 +1.1 169,657 - DZA65_RS00740 0.61 -1.2 169,657 - DZA65_RS00740 0.61 -0.7 169,870 - +0.4 169,963 + +0.0 169,963 + +0.6 169,963 + +0.1 169,963 + -0.4 169,963 + -0.8 169,963 + +0.3 169,964 - +0.3 169,964 - +0.2 169,964 - +1.1 169,965 + -0.2 169,965 + +1.1 169,966 - -1.4 169,966 - +0.0 169,966 - -0.0 169,966 - -1.4 169,966 - -0.2 169,995 - +0.9
Or see this region's nucleotide sequence