Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00605

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
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139,228	+			+0.9
139,228	+			+0.1
139,250	+			+0.7
139,250	+			-1.3
139,250	+			-0.0
139,250	+			-0.2
139,250	+			+0.3
139,250	+			-2.4
139,250	+			+0.7
139,251	-			+0.5
139,251	-			-0.3
139,251	-			-0.9
139,251	-			-0.2
139,251	-			+1.1
139,251	-			-0.5
139,251	-			-0.2
139,251	-			+1.1
139,251	-			+0.1
139,283	+			+0.5
139,283	+			+0.0
139,318	+			-0.9
139,318	+			+0.5
139,318	+			+0.9
139,318	+			-0.9
139,318	+			+1.2
139,318	+			-1.2
139,318	+			-0.8
139,318	+			-1.2
139,318	+			-0.3
139,319	-			+0.3
139,319	-			-0.1
139,319	-			-0.6
139,319	-			-2.5
139,319	-			-1.5
139,319	-			+0.2
139,319	-			-0.0
139,319	-			-0.1
139,319	-			-0.7
139,319	-			-0.7
139,493	-	DZA65_RS00600	0.20	-1.5
139,608	+	DZA65_RS00600	0.33	-0.8
139,608	+	DZA65_RS00600	0.33	+1.5
139,608	+	DZA65_RS00600	0.33	+0.7
139,608	+	DZA65_RS00600	0.33	+0.3
139,609	-	DZA65_RS00600	0.33	+1.0
139,609	-	DZA65_RS00600	0.33	+0.5
139,609	-	DZA65_RS00600	0.33	-1.6
139,611	+	DZA65_RS00600	0.33	-0.5
139,612	-	DZA65_RS00600	0.34	-0.8
139,612	-	DZA65_RS00600	0.34	-1.5
139,612	-	DZA65_RS00600	0.34	-0.1
139,612	-	DZA65_RS00600	0.34	-0.2
139,612	-	DZA65_RS00600	0.34	-0.1
139,612	-	DZA65_RS00600	0.34	+0.1
139,612	-	DZA65_RS00600	0.34	-0.4
139,612	-	DZA65_RS00600	0.34	+0.7
139,612	-	DZA65_RS00600	0.34	-0.5
139,612	-	DZA65_RS00600	0.34	-0.3
139,705	-	DZA65_RS00600	0.44	+2.4
139,705	-	DZA65_RS00600	0.44	-2.0
139,887	+	DZA65_RS00600	0.64	+1.1
140,209	+			-0.4
140,209	+			-1.4
140,210	-			-0.8
140,210	-			+0.3
140,485	-	DZA65_RS00605	0.33	-2.2
140,618	+	DZA65_RS00605	0.49	-0.7
140,618	+	DZA65_RS00605	0.49	+0.2
140,619	-	DZA65_RS00605	0.49	+0.1
140,619	-	DZA65_RS00605	0.49	-1.0
140,619	-	DZA65_RS00605	0.49	+0.5
140,654	-	DZA65_RS00605	0.53	+0.1
140,887	+	DZA65_RS00605	0.82	+0.1
140,887	+	DZA65_RS00605	0.82	-0.9
140,888	-	DZA65_RS00605	0.82	+0.3
140,888	-	DZA65_RS00605	0.82	-0.7
140,888	-	DZA65_RS00605	0.82	-2.5
140,888	-	DZA65_RS00605	0.82	-1.8
140,888	-	DZA65_RS00605	0.82	-2.2
140,930	+	DZA65_RS00605	0.87	-2.1
140,931	-	DZA65_RS00605	0.87	-0.3
140,931	-	DZA65_RS00605	0.87	-0.5
140,931	-	DZA65_RS00605	0.87	-0.3
140,931	-	DZA65_RS00605	0.87	-0.9
140,931	-	DZA65_RS00605	0.87	-0.7
140,931	-	DZA65_RS00605	0.87	+0.3
140,931	-	DZA65_RS00605	0.87	-0.3
140,947	+	DZA65_RS00605	0.89	+0.9
140,947	+	DZA65_RS00605	0.89	+0.7
140,947	+	DZA65_RS00605	0.89	-1.7
140,947	+	DZA65_RS00605	0.89	-0.9
140,948	-	DZA65_RS00605	0.89	-0.1
140,949	+	DZA65_RS00605	0.89	+0.1
140,950	-	DZA65_RS00605	0.89	-1.0
140,950	-	DZA65_RS00605	0.89	-0.9
140,997	+			+0.1
141,045	-			-1.8
141,045	-			+0.2
141,164	+	DZA65_RS00610	0.17	+0.3
141,191	+	DZA65_RS00610	0.21	+1.0
141,191	+	DZA65_RS00610	0.21	-0.7
141,292	-	DZA65_RS00610	0.34	+0.5
141,292	-	DZA65_RS00610	0.34	+0.4
141,292	-	DZA65_RS00610	0.34	-0.4
141,326	+	DZA65_RS00610	0.39	-0.4
141,326	+	DZA65_RS00610	0.39	-0.1
141,326	+	DZA65_RS00610	0.39	+0.0
141,326	+	DZA65_RS00610	0.39	+1.4
141,326	+	DZA65_RS00610	0.39	-0.1
141,326	+	DZA65_RS00610	0.39	+0.6
141,327	-	DZA65_RS00610	0.39	+0.9
141,381	-	DZA65_RS00610	0.46	+1.0
141,502	+	DZA65_RS00610	0.62	+0.5
141,502	+	DZA65_RS00610	0.62	-1.7
141,502	+			-0.3
141,502	+	DZA65_RS00610	0.62	-0.3
141,503	-	DZA65_RS00610	0.63	-1.0
141,503	-	DZA65_RS00610	0.63	-1.0
141,503	-	DZA65_RS00610	0.63	-0.7
141,590	+	DZA65_RS00610	0.74	+0.9
141,600	+	DZA65_RS00610	0.76	-0.0
141,600	+	DZA65_RS00610	0.76	+0.8
141,600	+	DZA65_RS00610	0.76	-0.7
141,600	+	DZA65_RS00610	0.76	-0.3
141,600	+	DZA65_RS00610	0.76	-0.5
141,600	+	DZA65_RS00610	0.76	+0.6
141,600	+			+0.1
141,600	+	DZA65_RS00610	0.76	-0.2
141,600	+	DZA65_RS00610	0.76	+0.4
141,600	+	DZA65_RS00610	0.76	+0.2
141,600	+	DZA65_RS00610	0.76	+0.7
141,600	+	DZA65_RS00610	0.76	-0.6
141,600	+	DZA65_RS00610	0.76	+0.2
141,600	+	DZA65_RS00610	0.76	-1.9
141,600	+	DZA65_RS00610	0.76	+1.2
141,600	+	DZA65_RS00610	0.76	+0.5
141,600	+	DZA65_RS00610	0.76	-1.7
141,600	+	DZA65_RS00610	0.76	-0.9
141,600	+	DZA65_RS00610	0.76	-0.2
141,600	+	DZA65_RS00610	0.76	-0.8
141,600	+	DZA65_RS00610	0.76	-0.5
141,600	+	DZA65_RS00610	0.76	-0.8
141,600	+	DZA65_RS00610	0.76	-0.0
141,600	+	DZA65_RS00610	0.76	-0.7
141,600	+	DZA65_RS00610	0.76	+0.7
141,600	+	DZA65_RS00610	0.76	-1.1
141,600	+	DZA65_RS00610	0.76	-0.7
141,600	+	DZA65_RS00610	0.76	-0.5
141,600	+	DZA65_RS00610	0.76	+0.0
141,600	+	DZA65_RS00610	0.76	-1.4
141,600	+	DZA65_RS00610	0.76	-1.7
141,601	-	DZA65_RS00610	0.76	+1.3
141,601	-	DZA65_RS00610	0.76	+0.7
141,601	-	DZA65_RS00610	0.76	-0.8
141,601	-	DZA65_RS00610	0.76	-1.7
141,601	-	DZA65_RS00610	0.76	+0.1
141,601	-	DZA65_RS00610	0.76	-0.9
141,601	-			+2.7
141,601	-	DZA65_RS00610	0.76	-0.2
141,601	-	DZA65_RS00610	0.76	-0.8
141,601	-	DZA65_RS00610	0.76	+1.1
141,601	-	DZA65_RS00610	0.76	-1.1
141,601	-	DZA65_RS00610	0.76	-0.8
141,601	-	DZA65_RS00610	0.76	-1.7
141,601	-	DZA65_RS00610	0.76	-0.1
141,601	-	DZA65_RS00610	0.76	-1.9
141,601	-	DZA65_RS00610	0.76	+1.0
141,601	-	DZA65_RS00610	0.76	+0.1
141,601	-	DZA65_RS00610	0.76	-2.0
141,601	-	DZA65_RS00610	0.76	-0.6
141,601	-	DZA65_RS00610	0.76	-0.7
141,601	-	DZA65_RS00610	0.76	+0.9
141,601	-	DZA65_RS00610	0.76	+0.1
141,601	-	DZA65_RS00610	0.76	-0.3
141,602	+	DZA65_RS00610	0.76	-0.8
141,602	+	DZA65_RS00610	0.76	+0.7
141,602	+	DZA65_RS00610	0.76	-1.7
141,602	+	DZA65_RS00610	0.76	-0.7
141,602	+	DZA65_RS00610	0.76	-0.9
141,602	+	DZA65_RS00610	0.76	-1.0
141,602	+	DZA65_RS00610	0.76	+0.4
141,602	+	DZA65_RS00610	0.76	+0.1
141,602	+	DZA65_RS00610	0.76	-1.8
141,602	+	DZA65_RS00610	0.76	-0.6
141,603	-	DZA65_RS00610	0.76	-0.5
141,603	-	DZA65_RS00610	0.76	-0.7
141,603	-			-0.3
141,603	-	DZA65_RS00610	0.76	+0.1
141,603	-	DZA65_RS00610	0.76	-1.7
141,603	-	DZA65_RS00610	0.76	+0.7
141,603	-	DZA65_RS00610	0.76	-0.0
141,603	-	DZA65_RS00610	0.76	-0.3
141,605	+	DZA65_RS00610	0.76	-0.5
141,605	+	DZA65_RS00610	0.76	-1.5
141,605	+	DZA65_RS00610	0.76	-1.2
141,605	+	DZA65_RS00610	0.76	+1.0
141,605	+	DZA65_RS00610	0.76	+0.0
141,605	+	DZA65_RS00610	0.76	-0.5
141,606	-	DZA65_RS00610	0.77	-0.5
141,606	-	DZA65_RS00610	0.77	+1.3
141,606	-	DZA65_RS00610	0.77	+2.1
141,606	-	DZA65_RS00610	0.77	-0.2
141,618	-	DZA65_RS00610	0.78	-1.8
141,618	-	DZA65_RS00610	0.78	-0.8
141,618	-	DZA65_RS00610	0.78	-1.3
141,618	-	DZA65_RS00610	0.78	-0.4
141,745	-			-0.7
141,745	-			+0.1
141,751	+			-1.1
141,751	+			-2.3
141,751	+			-0.8
141,751	+			-0.9
141,752	-			+0.7
141,752	-			+0.1
141,752	-			-0.7
141,783	+			+0.7
141,783	+			-1.8
141,783	+			-0.6
141,783	+			-0.0
141,783	+			-0.1
141,783	+			-0.3
141,783	+			-1.0
141,783	+			-0.4
141,783	+			+0.8
141,783	+			-0.1
141,783	+			+0.9
141,783	+			+0.1
141,783	+			-0.8
141,784	-			-0.6
141,784	-			-1.7
141,784	-			-1.5
141,784	-			-0.7
141,784	-			+0.7
141,784	-			+0.1
141,784	-			-1.2
141,784	-			-0.7

Or see this region's nucleotide sequence