Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00585 and DZA65_RS00590 are separated by 199 nucleotides DZA65_RS00590 and DZA65_RS00595 overlap by 1 nucleotides
DZA65_RS00585: DZA65_RS00585 - membrane dipeptidase, at 135,425 to 136,507
_RS00585
DZA65_RS00590: DZA65_RS00590 - ABC transporter substrate-binding protein, at 136,707 to 138,302
_RS00590
DZA65_RS00595: DZA65_RS00595 - ABC transporter permease, at 138,302 to 139,312
_RS00595
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 135.988 kb on + strand, within DZA65_RS00585 at 135.989 kb on - strand, within DZA65_RS00585 at 136.042 kb on + strand, within DZA65_RS00585 at 136.043 kb on - strand, within DZA65_RS00585 at 136.151 kb on + strand, within DZA65_RS00585 at 136.302 kb on + strand, within DZA65_RS00585 at 136.302 kb on + strand, within DZA65_RS00585 at 136.302 kb on + strand, within DZA65_RS00585 at 136.302 kb on + strand, within DZA65_RS00585 at 136.302 kb on + strand, within DZA65_RS00585 at 136.303 kb on - strand, within DZA65_RS00585 at 136.303 kb on - strand, within DZA65_RS00585 at 136.303 kb on - strand, within DZA65_RS00585 at 136.622 kb on + strand at 136.773 kb on - strand at 136.830 kb on - strand at 136.896 kb on + strand, within DZA65_RS00590 at 136.897 kb on - strand, within DZA65_RS00590 at 136.897 kb on - strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.168 kb on + strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.169 kb on - strand, within DZA65_RS00590 at 137.179 kb on + strand, within DZA65_RS00590 at 137.179 kb on + strand, within DZA65_RS00590 at 137.179 kb on + strand, within DZA65_RS00590 at 137.179 kb on + strand, within DZA65_RS00590 at 137.180 kb on - strand, within DZA65_RS00590 at 137.217 kb on + strand, within DZA65_RS00590 at 137.218 kb on - strand, within DZA65_RS00590 at 137.344 kb on + strand, within DZA65_RS00590 at 137.344 kb on + strand, within DZA65_RS00590 at 137.411 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.479 kb on + strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.480 kb on - strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.538 kb on + strand, within DZA65_RS00590 at 137.539 kb on - strand, within DZA65_RS00590 at 137.539 kb on - strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.630 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.826 kb on + strand, within DZA65_RS00590 at 137.827 kb on - strand, within DZA65_RS00590 at 137.827 kb on - strand, within DZA65_RS00590 at 137.985 kb on + strand, within DZA65_RS00590 at 137.986 kb on - strand, within DZA65_RS00590 at 138.153 kb on + strand at 138.153 kb on + strand at 138.154 kb on - strand at 138.154 kb on - strand at 138.262 kb on + strand at 138.262 kb on + strand at 138.279 kb on + strand at 138.279 kb on + strand at 138.309 kb on + strand at 138.310 kb on - strand at 138.328 kb on + strand at 138.329 kb on - strand at 138.501 kb on - strand, within DZA65_RS00595 at 138.501 kb on - strand, within DZA65_RS00595 at 138.509 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.587 kb on + strand, within DZA65_RS00595 at 138.588 kb on - strand, within DZA65_RS00595 at 138.588 kb on - strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.709 kb on + strand, within DZA65_RS00595 at 138.710 kb on - strand, within DZA65_RS00595 at 138.884 kb on + strand, within DZA65_RS00595 at 138.884 kb on + strand, within DZA65_RS00595 at 138.885 kb on - strand, within DZA65_RS00595 at 138.936 kb on + strand, within DZA65_RS00595 at 138.937 kb on - strand, within DZA65_RS00595 at 138.937 kb on - strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.941 kb on + strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.942 kb on - strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.956 kb on + strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.957 kb on - strand, within DZA65_RS00595 at 138.976 kb on + strand, within DZA65_RS00595 at 139.112 kb on + strand, within DZA65_RS00595 at 139.113 kb on - strand, within DZA65_RS00595 at 139.178 kb on + strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.179 kb on - strand, within DZA65_RS00595 at 139.187 kb on - strand, within DZA65_RS00595 at 139.228 kb on + strand at 139.228 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.250 kb on + strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.251 kb on - strand at 139.283 kb on + strand at 139.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 135,988 + DZA65_RS00585 0.52 +0.7 135,989 - DZA65_RS00585 0.52 +0.1 136,042 + DZA65_RS00585 0.57 -0.8 136,043 - DZA65_RS00585 0.57 -0.8 136,151 + DZA65_RS00585 0.67 -0.3 136,302 + DZA65_RS00585 0.81 +0.7 136,302 + DZA65_RS00585 0.81 -0.1 136,302 + DZA65_RS00585 0.81 -1.0 136,302 + DZA65_RS00585 0.81 -1.6 136,302 + DZA65_RS00585 0.81 -0.3 136,303 - DZA65_RS00585 0.81 +0.7 136,303 - DZA65_RS00585 0.81 +1.3 136,303 - DZA65_RS00585 0.81 +0.3 136,622 + +0.6 136,773 - +0.1 136,830 - -1.2 136,896 + DZA65_RS00590 0.12 +0.3 136,897 - DZA65_RS00590 0.12 -1.1 136,897 - DZA65_RS00590 0.12 +0.2 137,168 + DZA65_RS00590 0.29 -1.1 137,168 + DZA65_RS00590 0.29 +1.1 137,168 + DZA65_RS00590 0.29 -0.5 137,168 + DZA65_RS00590 0.29 -0.2 137,168 + DZA65_RS00590 0.29 -0.9 137,168 + DZA65_RS00590 0.29 -1.5 137,168 + DZA65_RS00590 0.29 -2.2 137,168 + DZA65_RS00590 0.29 -2.4 137,168 + DZA65_RS00590 0.29 -0.5 137,168 + DZA65_RS00590 0.29 -0.3 137,168 + DZA65_RS00590 0.29 -1.5 137,168 + DZA65_RS00590 0.29 -0.3 137,168 + DZA65_RS00590 0.29 -1.3 137,169 - DZA65_RS00590 0.29 -2.3 137,169 - DZA65_RS00590 0.29 +0.1 137,169 - DZA65_RS00590 0.29 -0.8 137,169 - DZA65_RS00590 0.29 -0.4 137,169 - +0.1 137,169 - DZA65_RS00590 0.29 -0.4 137,169 - DZA65_RS00590 0.29 -0.1 137,169 - DZA65_RS00590 0.29 +0.5 137,169 - DZA65_RS00590 0.29 -2.7 137,169 - DZA65_RS00590 0.29 +0.8 137,169 - DZA65_RS00590 0.29 +0.9 137,169 - DZA65_RS00590 0.29 -0.2 137,169 - DZA65_RS00590 0.29 +0.9 137,169 - DZA65_RS00590 0.29 +0.3 137,169 - DZA65_RS00590 0.29 -0.0 137,169 - DZA65_RS00590 0.29 -1.7 137,179 + DZA65_RS00590 0.30 -1.0 137,179 + DZA65_RS00590 0.30 +0.8 137,179 + DZA65_RS00590 0.30 -1.9 137,179 + DZA65_RS00590 0.30 -0.1 137,180 - DZA65_RS00590 0.30 -0.1 137,217 + DZA65_RS00590 0.32 +0.8 137,218 - DZA65_RS00590 0.32 -0.8 137,344 + DZA65_RS00590 0.40 -0.7 137,344 + DZA65_RS00590 0.40 -1.1 137,411 + DZA65_RS00590 0.44 +1.7 137,479 + DZA65_RS00590 0.48 -2.3 137,479 + DZA65_RS00590 0.48 -0.1 137,479 + DZA65_RS00590 0.48 -1.2 137,479 + DZA65_RS00590 0.48 -1.0 137,479 + DZA65_RS00590 0.48 -0.1 137,479 + DZA65_RS00590 0.48 -1.3 137,479 + +2.7 137,479 + DZA65_RS00590 0.48 -0.2 137,479 + DZA65_RS00590 0.48 -2.1 137,479 + DZA65_RS00590 0.48 -0.6 137,479 + DZA65_RS00590 0.48 -1.2 137,479 + DZA65_RS00590 0.48 +0.5 137,479 + DZA65_RS00590 0.48 +2.2 137,479 + DZA65_RS00590 0.48 +0.1 137,479 + DZA65_RS00590 0.48 +0.2 137,479 + DZA65_RS00590 0.48 -1.1 137,479 + DZA65_RS00590 0.48 +0.7 137,479 + DZA65_RS00590 0.48 -0.5 137,479 + DZA65_RS00590 0.48 +0.2 137,479 + DZA65_RS00590 0.48 -0.8 137,479 + DZA65_RS00590 0.48 -0.8 137,479 + DZA65_RS00590 0.48 -0.8 137,479 + DZA65_RS00590 0.48 -0.4 137,480 - DZA65_RS00590 0.48 -1.2 137,480 - DZA65_RS00590 0.48 -0.7 137,480 - DZA65_RS00590 0.48 -1.3 137,480 - DZA65_RS00590 0.48 -1.1 137,480 - DZA65_RS00590 0.48 -1.3 137,480 - DZA65_RS00590 0.48 -0.4 137,480 - DZA65_RS00590 0.48 +0.7 137,480 - DZA65_RS00590 0.48 -0.2 137,480 - DZA65_RS00590 0.48 +0.2 137,480 - DZA65_RS00590 0.48 -1.0 137,480 - DZA65_RS00590 0.48 -0.1 137,480 - DZA65_RS00590 0.48 -0.6 137,480 - DZA65_RS00590 0.48 -0.1 137,480 - DZA65_RS00590 0.48 -0.7 137,480 - DZA65_RS00590 0.48 -0.5 137,480 - DZA65_RS00590 0.48 -0.2 137,480 - DZA65_RS00590 0.48 -0.2 137,480 - DZA65_RS00590 0.48 +0.1 137,480 - DZA65_RS00590 0.48 -0.2 137,480 - DZA65_RS00590 0.48 -1.2 137,538 + DZA65_RS00590 0.52 -0.8 137,538 + DZA65_RS00590 0.52 +1.2 137,538 + DZA65_RS00590 0.52 -0.5 137,538 + DZA65_RS00590 0.52 +0.2 137,539 - DZA65_RS00590 0.52 +1.1 137,539 - DZA65_RS00590 0.52 -0.7 137,630 + DZA65_RS00590 0.58 +1.1 137,630 + DZA65_RS00590 0.58 -3.1 137,630 + DZA65_RS00590 0.58 -0.6 137,826 + DZA65_RS00590 0.70 +0.1 137,826 + DZA65_RS00590 0.70 +0.4 137,826 + DZA65_RS00590 0.70 +1.7 137,827 - DZA65_RS00590 0.70 +1.0 137,827 - DZA65_RS00590 0.70 -1.8 137,985 + DZA65_RS00590 0.80 -1.0 137,986 - DZA65_RS00590 0.80 -0.1 138,153 + +0.4 138,153 + +0.2 138,154 - +0.9 138,154 - -0.3 138,262 + +0.7 138,262 + +1.1 138,279 + +1.0 138,279 + -2.0 138,309 + +0.5 138,310 - +0.5 138,328 + +1.1 138,329 - -1.1 138,501 - DZA65_RS00595 0.20 +0.4 138,501 - DZA65_RS00595 0.20 +0.8 138,509 + DZA65_RS00595 0.20 -0.1 138,587 + DZA65_RS00595 0.28 -0.3 138,587 + DZA65_RS00595 0.28 +0.9 138,587 + DZA65_RS00595 0.28 -0.3 138,588 - DZA65_RS00595 0.28 -0.8 138,588 - DZA65_RS00595 0.28 -0.8 138,709 + DZA65_RS00595 0.40 +0.9 138,709 + DZA65_RS00595 0.40 -1.1 138,709 + DZA65_RS00595 0.40 -0.2 138,710 - DZA65_RS00595 0.40 +0.1 138,884 + DZA65_RS00595 0.58 -0.8 138,884 + DZA65_RS00595 0.58 +0.3 138,885 - DZA65_RS00595 0.58 -0.7 138,936 + DZA65_RS00595 0.63 +0.3 138,937 - DZA65_RS00595 0.63 -0.0 138,937 - DZA65_RS00595 0.63 -1.8 138,941 + DZA65_RS00595 0.63 +1.5 138,941 + DZA65_RS00595 0.63 -0.7 138,941 + DZA65_RS00595 0.63 +0.1 138,941 + DZA65_RS00595 0.63 -0.8 138,941 + DZA65_RS00595 0.63 -1.3 138,942 - DZA65_RS00595 0.63 -0.6 138,942 - DZA65_RS00595 0.63 -1.3 138,942 - DZA65_RS00595 0.63 +0.1 138,956 + DZA65_RS00595 0.65 -0.4 138,956 + DZA65_RS00595 0.65 -1.2 138,956 + DZA65_RS00595 0.65 -0.1 138,956 + DZA65_RS00595 0.65 -0.0 138,956 + DZA65_RS00595 0.65 -0.3 138,956 + DZA65_RS00595 0.65 +0.5 138,956 + DZA65_RS00595 0.65 +1.1 138,956 + DZA65_RS00595 0.65 +1.2 138,956 + DZA65_RS00595 0.65 -1.0 138,956 + DZA65_RS00595 0.65 -0.7 138,957 - DZA65_RS00595 0.65 +0.4 138,957 - DZA65_RS00595 0.65 -0.7 138,957 - DZA65_RS00595 0.65 +0.7 138,957 - DZA65_RS00595 0.65 -0.3 138,957 - DZA65_RS00595 0.65 -0.1 138,957 - DZA65_RS00595 0.65 -0.0 138,957 - DZA65_RS00595 0.65 -1.6 138,957 - DZA65_RS00595 0.65 -1.8 138,976 + DZA65_RS00595 0.67 +2.1 139,112 + DZA65_RS00595 0.80 -1.9 139,113 - DZA65_RS00595 0.80 -0.1 139,178 + DZA65_RS00595 0.87 +0.4 139,179 - DZA65_RS00595 0.87 -0.4 139,179 - DZA65_RS00595 0.87 +0.4 139,179 - DZA65_RS00595 0.87 -0.7 139,187 - DZA65_RS00595 0.88 -1.2 139,228 + +0.9 139,228 + +0.1 139,250 + +0.7 139,250 + -1.3 139,250 + -0.0 139,250 + -0.2 139,250 + +0.3 139,250 + -2.4 139,250 + +0.7 139,251 - +0.5 139,251 - -0.3 139,251 - -0.9 139,251 - -0.2 139,251 - +1.1 139,251 - -0.5 139,251 - -0.2 139,251 - +1.1 139,251 - +0.1 139,283 + +0.5 139,283 + +0.0
Or see this region's nucleotide sequence