Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00435

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
105,099	-	DZA65_RS00430	0.22	+0.5
105,117	-	DZA65_RS00430	0.23	+1.9
105,168	+	DZA65_RS00430	0.27	-1.5
105,168	+	DZA65_RS00430	0.27	+0.5
105,168	+	DZA65_RS00430	0.27	+0.5
105,168	+	DZA65_RS00430	0.27	-0.8
105,168	+			+3.0
105,168	+	DZA65_RS00430	0.27	+1.7
105,168	+	DZA65_RS00430	0.27	-0.3
105,168	+	DZA65_RS00430	0.27	+0.5
105,168	+	DZA65_RS00430	0.27	+0.1
105,168	+	DZA65_RS00430	0.27	-1.3
105,168	+	DZA65_RS00430	0.27	-0.2
105,168	+	DZA65_RS00430	0.27	-0.1
105,168	+	DZA65_RS00430	0.27	-1.8
105,168	+	DZA65_RS00430	0.27	-0.0
105,169	-	DZA65_RS00430	0.27	-1.3
105,169	-	DZA65_RS00430	0.27	-0.9
105,169	-	DZA65_RS00430	0.27	+0.4
105,169	-	DZA65_RS00430	0.27	+0.5
105,169	-	DZA65_RS00430	0.27	-0.2
105,169	-	DZA65_RS00430	0.27	+0.2
105,169	-	DZA65_RS00430	0.27	-0.6
105,169	-	DZA65_RS00430	0.27	-1.0
105,169	-	DZA65_RS00430	0.27	+1.0
105,169	-	DZA65_RS00430	0.27	-0.0
105,169	-	DZA65_RS00430	0.27	+1.2
105,169	-	DZA65_RS00430	0.27	+0.7
105,169	-	DZA65_RS00430	0.27	-1.6
105,169	-	DZA65_RS00430	0.27	+0.5
105,169	-	DZA65_RS00430	0.27	-0.8
105,169	-	DZA65_RS00430	0.27	-1.0
105,169	-	DZA65_RS00430	0.27	-0.8
105,169	-	DZA65_RS00430	0.27	+0.3
105,169	-	DZA65_RS00430	0.27	-0.1
105,171	+	DZA65_RS00430	0.27	+0.1
105,171	+	DZA65_RS00430	0.27	-0.4
105,171	+	DZA65_RS00430	0.27	+1.3
105,171	+	DZA65_RS00430	0.27	+0.9
105,171	+	DZA65_RS00430	0.27	-0.6
105,171	+	DZA65_RS00430	0.27	-1.0
105,171	+	DZA65_RS00430	0.27	-0.0
105,171	+	DZA65_RS00430	0.27	+0.9
105,171	+	DZA65_RS00430	0.27	+0.7
105,171	+	DZA65_RS00430	0.27	+0.1
105,171	+	DZA65_RS00430	0.27	+0.9
105,171	+	DZA65_RS00430	0.27	+0.1
105,171	+	DZA65_RS00430	0.27	+1.3
105,171	+	DZA65_RS00430	0.27	+0.2
105,171	+	DZA65_RS00430	0.27	-0.8
105,171	+	DZA65_RS00430	0.27	-1.9
105,171	+	DZA65_RS00430	0.27	+0.2
105,171	+	DZA65_RS00430	0.27	+0.2
105,171	+	DZA65_RS00430	0.27	-1.1
105,171	+	DZA65_RS00430	0.27	+0.7
105,172	-	DZA65_RS00430	0.27	-1.3
105,172	-	DZA65_RS00430	0.27	-0.5
105,172	-	DZA65_RS00430	0.27	+1.5
105,172	-	DZA65_RS00430	0.27	+0.2
105,172	-	DZA65_RS00430	0.27	+0.2
105,172	-	DZA65_RS00430	0.27	+0.1
105,172	-	DZA65_RS00430	0.27	+0.9
105,172	-	DZA65_RS00430	0.27	-1.5
105,172	-	DZA65_RS00430	0.27	-0.2
105,172	-	DZA65_RS00430	0.27	+0.2
105,172	-	DZA65_RS00430	0.27	-0.5
105,172	-	DZA65_RS00430	0.27	-1.1
105,172	-	DZA65_RS00430	0.27	-0.2
105,172	-	DZA65_RS00430	0.27	-0.3
105,204	-	DZA65_RS00430	0.30	-0.9
105,204	-	DZA65_RS00430	0.30	+0.5
105,445	+	DZA65_RS00430	0.48	+0.3
105,445	+	DZA65_RS00430	0.48	-0.7
105,445	+	DZA65_RS00430	0.48	+0.1
105,516	-	DZA65_RS00430	0.53	+0.1
105,593	+	DZA65_RS00430	0.59	-0.3
105,594	-	DZA65_RS00430	0.59	-1.3
105,594	-	DZA65_RS00430	0.59	+1.3
105,677	+	DZA65_RS00430	0.65	-0.5
105,678	-	DZA65_RS00430	0.65	-0.3
105,678	-	DZA65_RS00430	0.65	+0.7
105,678	-	DZA65_RS00430	0.65	+0.1
105,681	+	DZA65_RS00430	0.66	-1.7
105,681	+	DZA65_RS00430	0.66	-0.1
105,681	+	DZA65_RS00430	0.66	-0.9
105,682	-	DZA65_RS00430	0.66	-0.3
105,838	+	DZA65_RS00430	0.78	+0.8
105,838	+	DZA65_RS00430	0.78	+0.1
105,838	+	DZA65_RS00430	0.78	-1.2
105,838	+	DZA65_RS00430	0.78	-0.0
105,838	+	DZA65_RS00430	0.78	-0.7
105,838	+	DZA65_RS00430	0.78	-0.3
105,839	-	DZA65_RS00430	0.78	-0.5
105,839	-	DZA65_RS00430	0.78	+0.3
105,839	-	DZA65_RS00430	0.78	-0.7
105,839	-	DZA65_RS00430	0.78	+0.3
105,839	-	DZA65_RS00430	0.78	-0.8
105,839	-	DZA65_RS00430	0.78	-1.3
105,932	+	DZA65_RS00430	0.85	+1.1
105,942	-	DZA65_RS00430	0.85	-0.2
105,993	+	DZA65_RS00430	0.89	-0.9
105,993	+	DZA65_RS00430	0.89	-1.1
105,994	-	DZA65_RS00430	0.89	+0.4
105,994	-	DZA65_RS00430	0.89	-2.1
105,994	-	DZA65_RS00430	0.89	-1.7
105,994	-	DZA65_RS00430	0.89	+0.7
105,994	-	DZA65_RS00430	0.89	-0.8
105,995	+	DZA65_RS00430	0.89	+0.1
105,995	+	DZA65_RS00430	0.89	-0.7
105,995	+	DZA65_RS00430	0.89	-0.2
105,996	-	DZA65_RS00430	0.90	+0.8
105,996	-	DZA65_RS00430	0.90	+0.2
105,996	-	DZA65_RS00430	0.90	-0.5
105,996	-	DZA65_RS00430	0.90	-0.3
105,996	-	DZA65_RS00430	0.90	-0.3
105,996	-	DZA65_RS00430	0.90	-1.2
106,112	+			-0.3
106,112	+			+0.1
106,112	+			+0.6
106,112	+			-0.8
106,329	-	DZA65_RS00435	0.31	-1.2
106,329	-	DZA65_RS00435	0.31	-0.3
106,329	-	DZA65_RS00435	0.31	-0.6
106,365	-	DZA65_RS00435	0.36	-1.1
106,402	-	DZA65_RS00435	0.40	-0.4
106,445	+	DZA65_RS00435	0.46	-0.7
106,485	+	DZA65_RS00435	0.51	-0.5
106,485	+	DZA65_RS00435	0.51	-0.3
106,486	-	DZA65_RS00435	0.51	-0.5
106,535	+	DZA65_RS00435	0.58	+1.0
106,535	+	DZA65_RS00435	0.58	+0.7
106,600	+	DZA65_RS00435	0.66	-0.3
106,600	+	DZA65_RS00435	0.66	+2.4
106,600	+	DZA65_RS00435	0.66	-0.2
106,600	+	DZA65_RS00435	0.66	+0.2
106,600	+	DZA65_RS00435	0.66	+1.1
106,600	+	DZA65_RS00435	0.66	+0.9
106,600	+	DZA65_RS00435	0.66	+1.0
106,600	+	DZA65_RS00435	0.66	-0.1
106,600	+	DZA65_RS00435	0.66	+0.3
106,600	+	DZA65_RS00435	0.66	+0.1
106,600	+	DZA65_RS00435	0.66	-0.5
106,600	+	DZA65_RS00435	0.66	-0.7
106,600	+	DZA65_RS00435	0.66	+0.1
106,600	+	DZA65_RS00435	0.66	-0.1
106,600	+	DZA65_RS00435	0.66	+0.5
106,601	-	DZA65_RS00435	0.66	+0.3
106,601	-			-0.7
106,601	-	DZA65_RS00435	0.66	+0.5
106,601	-	DZA65_RS00435	0.66	-0.3
106,601	-	DZA65_RS00435	0.66	-0.3
106,601	-	DZA65_RS00435	0.66	-0.1
106,601	-	DZA65_RS00435	0.66	+0.4
106,601	-	DZA65_RS00435	0.66	-0.7
106,601	-	DZA65_RS00435	0.66	-1.9
106,601	-	DZA65_RS00435	0.66	-0.7
106,601	-	DZA65_RS00435	0.66	-1.0
106,601	-	DZA65_RS00435	0.66	-0.1
106,601	-	DZA65_RS00435	0.66	-0.7
106,601	-	DZA65_RS00435	0.66	-0.8
106,601	-	DZA65_RS00435	0.66	+1.7
106,601	-	DZA65_RS00435	0.66	-0.5
106,601	-	DZA65_RS00435	0.66	-1.1
106,601	-	DZA65_RS00435	0.66	-0.7
106,601	-	DZA65_RS00435	0.66	-0.3
106,601	-	DZA65_RS00435	0.66	+0.1
106,602	+	DZA65_RS00435	0.66	-1.0
106,602	+	DZA65_RS00435	0.66	+0.7
106,602	+	DZA65_RS00435	0.66	-1.1
106,602	+	DZA65_RS00435	0.66	-0.4
106,602	+	DZA65_RS00435	0.66	-0.2
106,602	+	DZA65_RS00435	0.66	-2.7
106,603	-	DZA65_RS00435	0.67	-0.5
106,731	+	DZA65_RS00435	0.83	-0.6
106,759	+	DZA65_RS00435	0.87	-0.2
106,760	-	DZA65_RS00435	0.87	-0.1
106,760	-	DZA65_RS00435	0.87	-0.9
106,760	-	DZA65_RS00435	0.87	-0.7
106,760	-	DZA65_RS00435	0.87	+0.0
106,812	-			+0.4
106,862	+			-1.3
106,862	+			+0.3
106,862	+			-0.2
106,862	+			-0.1
106,862	+			+1.7
106,862	+			-0.9
106,863	-			+0.1
106,863	-			-0.2
106,863	-			+0.1
106,863	-			+0.2
106,863	-			+0.2
106,863	-			+0.5
106,863	-			+0.3
106,863	-			+0.2
106,863	-			+0.1
106,863	-			+0.8
106,863	-			-0.4
106,863	-			+1.3
106,866	+			-0.2
106,866	+			+0.1
106,866	+			-0.7
106,866	+			-0.2
106,866	+			-2.4
106,866	+			-0.0
106,867	-			-0.4
106,867	-			-0.6
106,867	-			-0.3
106,879	-			-0.8
106,879	-			+0.1
106,893	-			+0.3
106,968	+	DZA65_RS00440	0.19	-0.3
106,981	-	DZA65_RS00440	0.21	-0.6
107,192	+	DZA65_RS00440	0.53	+0.4
107,193	-	DZA65_RS00440	0.53	-1.3
107,193	-	DZA65_RS00440	0.53	-0.7
107,195	+	DZA65_RS00440	0.54	+0.3
107,195	+	DZA65_RS00440	0.54	-0.2
107,196	-	DZA65_RS00440	0.54	-0.3
107,210	+	DZA65_RS00440	0.56	+0.2
107,274	+	DZA65_RS00440	0.66	+0.7
107,309	+	DZA65_RS00440	0.71	+0.7
107,309	+	DZA65_RS00440	0.71	-1.0
107,310	-	DZA65_RS00440	0.71	+0.2
107,403	-	DZA65_RS00440	0.86	+2.1
107,403	-	DZA65_RS00440	0.86	+0.1
107,546	+			+0.7
107,546	+			+1.1
107,547	-			+0.3
107,573	+			+1.5
107,574	-			+0.2
107,636	+			-0.6
107,636	+			-0.2
107,636	+			-1.5
107,637	-			-0.9
107,637	-			-0.9
107,637	-			+0.1
107,637	-			-0.9
107,637	-			+0.5
107,637	-			-0.1
107,637	-			+0.4
107,637	-			+1.9
107,637	-			+0.0
107,637	-			-0.1
107,688	+			+0.7
107,688	+			+0.1
107,688	+			-0.6
107,689	-			-1.8
107,689	-			+0.2
107,689	-			-0.3
107,689	-			-0.8
107,689	-			+0.7
107,689	-			+0.7
107,689	-			-0.1
107,689	-			+0.3
107,691	+			-1.6
107,691	+			-2.6
107,691	+			-0.5
107,691	+			-0.7
107,691	+			+1.0
107,691	+			+0.3
107,691	+			-0.4
107,691	+			-0.7
107,691	+			-0.6
107,691	+			-0.2
107,691	+			-0.1
107,691	+			-0.0
107,691	+			+0.1
107,691	+			-0.1
107,691	+			-0.1
107,692	-			-1.4
107,692	-			-1.7
107,692	-			+0.2
107,692	-			+0.6
107,692	-			-0.4
107,692	-			-0.3
107,692	-			-0.5
107,692	-			+0.9
107,692	-			-0.4
107,692	-			+0.3
107,692	-			-0.8
107,692	-			-0.9
107,692	-			-1.2
107,697	+			-1.5
107,697	+			+0.9
107,698	-			+3.7
107,698	-			-0.6
107,702	+			-0.6
107,702	+			-0.1
107,702	+			+1.1
107,702	+			+0.1
107,702	+			+0.3
107,702	+			+0.8
107,702	+			-1.4
107,702	+			-1.3
107,702	+			+1.7
107,702	+			+1.7
107,703	-			+1.0
107,703	-			+0.4
107,703	-			+0.1
107,703	-			-1.0
107,703	-			+0.8
107,703	-			-0.1
107,703	-			-1.9
107,703	-			+0.1
107,703	-			-0.8
107,703	-			+0.6
107,703	-			+1.9
107,703	-			-0.3
107,703	-			+1.2
107,703	-			-0.1
107,703	-			-0.1
107,706	+			-0.8
107,742	-			-0.5
107,752	-			-0.7
107,755	+			-0.3
107,755	+			-0.3
107,755	+			-0.2
107,755	+			-0.1
107,755	+			-0.5
107,755	+			-0.5
107,756	-			-0.2
107,756	-			+0.0

Or see this region's nucleotide sequence