Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00415 and DZA65_RS00420 are separated by 4 nucleotides DZA65_RS00420 and DZA65_RS00425 are separated by 204 nucleotides
DZA65_RS00415: DZA65_RS00415 - ABC transporter ATP-binding protein, at 100,066 to 100,773
_RS00415
DZA65_RS00420: DZA65_RS00420 - FtsX-like permease family protein, at 100,778 to 103,213
_RS00420
DZA65_RS00425: DZA65_RS00425 - sigma-54-dependent Fis family transcriptional regulator, at 103,418 to 104,821
_RS00425
Position (kb) 100
101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.802 kb on + strand at 99.826 kb on + strand at 99.827 kb on - strand at 99.827 kb on - strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.868 kb on + strand at 99.869 kb on - strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.942 kb on + strand at 99.943 kb on - strand at 99.943 kb on - strand at 99.943 kb on - strand at 99.943 kb on - strand at 99.958 kb on + strand at 99.959 kb on - strand at 99.959 kb on - strand at 99.987 kb on + strand at 99.987 kb on + strand at 100.011 kb on + strand at 100.011 kb on + strand at 100.011 kb on + strand at 100.011 kb on + strand at 100.012 kb on - strand at 100.012 kb on - strand at 100.012 kb on - strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.043 kb on + strand at 100.044 kb on - strand at 100.044 kb on - strand at 100.044 kb on - strand at 100.044 kb on - strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.047 kb on + strand at 100.048 kb on - strand at 100.048 kb on - strand at 100.048 kb on - strand at 100.048 kb on - strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.049 kb on + strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.089 kb on + strand at 100.089 kb on + strand at 100.090 kb on - strand at 100.099 kb on - strand at 100.138 kb on - strand, within DZA65_RS00415 at 100.145 kb on + strand, within DZA65_RS00415 at 100.146 kb on - strand, within DZA65_RS00415 at 100.146 kb on - strand, within DZA65_RS00415 at 100.146 kb on - strand, within DZA65_RS00415 at 100.155 kb on + strand at 100.155 kb on + strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.156 kb on - strand, within DZA65_RS00415 at 100.171 kb on + strand, within DZA65_RS00415 at 100.171 kb on + strand, within DZA65_RS00415 at 100.171 kb on + strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.172 kb on - strand, within DZA65_RS00415 at 100.280 kb on + strand, within DZA65_RS00415 at 100.280 kb on + strand, within DZA65_RS00415 at 100.280 kb on + strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.281 kb on - strand, within DZA65_RS00415 at 100.335 kb on + strand, within DZA65_RS00415 at 100.336 kb on - strand, within DZA65_RS00415 at 100.336 kb on - strand, within DZA65_RS00415 at 100.358 kb on + strand, within DZA65_RS00415 at 100.359 kb on - strand, within DZA65_RS00415 at 100.385 kb on + strand, within DZA65_RS00415 at 100.385 kb on + strand, within DZA65_RS00415 at 100.385 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.402 kb on + strand, within DZA65_RS00415 at 100.403 kb on - strand, within DZA65_RS00415 at 100.490 kb on - strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.623 kb on + strand, within DZA65_RS00415 at 100.624 kb on - strand, within DZA65_RS00415 at 100.624 kb on - strand, within DZA65_RS00415 at 100.786 kb on - strand at 100.887 kb on - strand at 100.887 kb on - strand at 100.893 kb on - strand at 100.893 kb on - strand at 100.893 kb on - strand at 101.018 kb on - strand at 101.108 kb on - strand, within DZA65_RS00420 at 101.112 kb on - strand at 101.138 kb on - strand, within DZA65_RS00420 at 101.138 kb on - strand, within DZA65_RS00420 at 101.138 kb on - strand, within DZA65_RS00420 at 101.148 kb on - strand, within DZA65_RS00420 at 101.212 kb on - strand, within DZA65_RS00420 at 101.269 kb on + strand, within DZA65_RS00420 at 101.275 kb on + strand, within DZA65_RS00420 at 101.310 kb on - strand, within DZA65_RS00420 at 101.310 kb on - strand, within DZA65_RS00420 at 101.310 kb on - strand, within DZA65_RS00420 at 101.430 kb on - strand, within DZA65_RS00420 at 101.430 kb on - strand, within DZA65_RS00420 at 101.430 kb on - strand, within DZA65_RS00420 at 101.881 kb on - strand, within DZA65_RS00420 at 101.885 kb on - strand, within DZA65_RS00420 at 101.885 kb on - strand, within DZA65_RS00420 at 101.989 kb on - strand, within DZA65_RS00420 at 102.086 kb on - strand, within DZA65_RS00420 at 102.089 kb on - strand, within DZA65_RS00420 at 102.161 kb on - strand, within DZA65_RS00420 at 102.427 kb on - strand, within DZA65_RS00420 at 102.427 kb on - strand, within DZA65_RS00420 at 102.482 kb on - strand, within DZA65_RS00420 at 102.507 kb on - strand, within DZA65_RS00420 at 102.531 kb on + strand, within DZA65_RS00420 at 102.576 kb on - strand, within DZA65_RS00420 at 102.603 kb on + strand, within DZA65_RS00420 at 102.604 kb on - strand, within DZA65_RS00420 at 102.604 kb on - strand, within DZA65_RS00420 at 102.647 kb on - strand, within DZA65_RS00420 at 102.647 kb on - strand, within DZA65_RS00420 at 102.647 kb on - strand, within DZA65_RS00420 at 102.679 kb on + strand, within DZA65_RS00420 at 102.689 kb on - strand, within DZA65_RS00420 at 102.698 kb on - strand, within DZA65_RS00420 at 102.698 kb on - strand, within DZA65_RS00420 at 102.749 kb on - strand, within DZA65_RS00420 at 102.749 kb on - strand, within DZA65_RS00420 at 102.933 kb on + strand, within DZA65_RS00420 at 102.934 kb on - strand, within DZA65_RS00420 at 102.972 kb on + strand at 102.972 kb on + strand at 102.979 kb on + strand at 102.979 kb on + strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 102.980 kb on - strand at 103.063 kb on - strand at 103.097 kb on - strand at 103.117 kb on - strand at 103.201 kb on - strand at 103.201 kb on - strand at 103.205 kb on + strand at 103.206 kb on - strand at 103.212 kb on - strand at 103.228 kb on + strand at 103.228 kb on + strand at 103.228 kb on + strand at 103.229 kb on - strand at 103.229 kb on - strand at 103.269 kb on - strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.308 kb on + strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.309 kb on - strand at 103.312 kb on + strand at 103.312 kb on + strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.313 kb on - strand at 103.334 kb on - strand at 103.393 kb on - strand at 103.408 kb on - strand at 103.408 kb on - strand at 103.408 kb on - strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.435 kb on + strand at 103.436 kb on - strand at 103.436 kb on - strand at 103.436 kb on - strand at 103.462 kb on + strand at 103.463 kb on - strand at 103.463 kb on - strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.485 kb on + strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.486 kb on - strand at 103.496 kb on + strand at 103.503 kb on - strand at 103.583 kb on - strand, within DZA65_RS00425 at 103.589 kb on + strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.590 kb on - strand, within DZA65_RS00425 at 103.600 kb on + strand, within DZA65_RS00425 at 103.641 kb on + strand, within DZA65_RS00425 at 103.641 kb on + strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.642 kb on - strand, within DZA65_RS00425 at 103.649 kb on + strand, within DZA65_RS00425 at 103.658 kb on + strand, within DZA65_RS00425 at 103.659 kb on - strand, within DZA65_RS00425 at 103.738 kb on + strand, within DZA65_RS00425 at 103.738 kb on + strand, within DZA65_RS00425 at 103.739 kb on - strand, within DZA65_RS00425 at 103.739 kb on - strand, within DZA65_RS00425
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 99,802 + +0.4 99,826 + -1.1 99,827 - -1.7 99,827 - -0.5 99,868 + -0.2 99,868 + +0.4 99,868 + +0.8 99,868 + +0.1 99,868 + +1.5 99,868 + -1.0 99,869 - +0.3 99,942 + -0.4 99,942 + -0.1 99,942 + -1.2 99,942 + +0.3 99,942 + -0.5 99,943 - +0.9 99,943 - +0.2 99,943 - -0.3 99,943 - +3.2 99,958 + -0.8 99,959 - +0.8 99,959 - -0.1 99,987 + -0.2 99,987 + +0.6 100,011 + -2.1 100,011 + -0.3 100,011 + +0.1 100,011 + +0.5 100,012 - -0.8 100,012 - -1.9 100,012 - -1.3 100,043 + +0.2 100,043 + -0.4 100,043 + +0.1 100,043 + -0.3 100,043 + -1.8 100,043 + +0.4 100,044 - -0.8 100,044 - -1.2 100,044 - -0.1 100,044 - -0.6 100,047 + +0.9 100,047 + +0.1 100,047 + +0.1 100,047 + +0.7 100,047 + -0.1 100,047 + +0.4 100,047 + +0.8 100,048 - -1.0 100,048 - +0.7 100,048 - -0.7 100,048 - +1.1 100,049 + -0.3 100,049 + +1.8 100,049 + +0.8 100,049 + +0.1 100,049 + -2.3 100,050 - +0.3 100,050 - -0.3 100,050 - -0.9 100,050 - +0.5 100,089 + +0.9 100,089 + +0.5 100,090 - +0.4 100,099 - -1.1 100,138 - DZA65_RS00415 0.10 +0.4 100,145 + DZA65_RS00415 0.11 +1.0 100,146 - DZA65_RS00415 0.11 +0.1 100,146 - DZA65_RS00415 0.11 +1.7 100,146 - DZA65_RS00415 0.11 -0.1 100,155 + +0.9 100,155 + DZA65_RS00415 0.13 -0.9 100,156 - DZA65_RS00415 0.13 -0.2 100,156 - DZA65_RS00415 0.13 +0.1 100,156 - DZA65_RS00415 0.13 -1.1 100,156 - DZA65_RS00415 0.13 +0.4 100,171 + DZA65_RS00415 0.15 +0.3 100,171 + DZA65_RS00415 0.15 -0.1 100,171 + DZA65_RS00415 0.15 -0.8 100,172 - DZA65_RS00415 0.15 -0.1 100,172 - DZA65_RS00415 0.15 +0.2 100,172 - DZA65_RS00415 0.15 +0.9 100,172 - DZA65_RS00415 0.15 -1.1 100,172 - DZA65_RS00415 0.15 +0.2 100,172 - DZA65_RS00415 0.15 +1.0 100,172 - DZA65_RS00415 0.15 -0.0 100,280 + DZA65_RS00415 0.30 -0.3 100,280 + DZA65_RS00415 0.30 +0.5 100,280 + DZA65_RS00415 0.30 -0.3 100,281 - DZA65_RS00415 0.30 -0.0 100,281 - DZA65_RS00415 0.30 -0.0 100,281 - DZA65_RS00415 0.30 -0.1 100,281 - DZA65_RS00415 0.30 +0.2 100,281 - DZA65_RS00415 0.30 +0.4 100,281 - DZA65_RS00415 0.30 +0.1 100,281 - DZA65_RS00415 0.30 -0.9 100,335 + DZA65_RS00415 0.38 -2.6 100,336 - DZA65_RS00415 0.38 +0.2 100,336 - DZA65_RS00415 0.38 +1.7 100,358 + DZA65_RS00415 0.41 -0.3 100,359 - DZA65_RS00415 0.41 -1.1 100,385 + DZA65_RS00415 0.45 -0.7 100,385 + DZA65_RS00415 0.45 +0.3 100,385 + DZA65_RS00415 0.45 +0.7 100,402 + DZA65_RS00415 0.47 +0.3 100,402 + DZA65_RS00415 0.47 +0.3 100,402 + DZA65_RS00415 0.47 -0.8 100,402 + DZA65_RS00415 0.47 -1.0 100,403 - DZA65_RS00415 0.48 -0.4 100,490 - DZA65_RS00415 0.60 +0.9 100,623 + DZA65_RS00415 0.79 +0.9 100,623 + DZA65_RS00415 0.79 +0.7 100,623 + DZA65_RS00415 0.79 -0.4 100,623 + DZA65_RS00415 0.79 +0.2 100,623 + DZA65_RS00415 0.79 +0.2 100,623 + DZA65_RS00415 0.79 -0.2 100,624 - DZA65_RS00415 0.79 -0.7 100,624 - DZA65_RS00415 0.79 -0.5 100,786 - -0.9 100,887 - -1.3 100,887 - -0.8 100,893 - -0.8 100,893 - -1.5 100,893 - -0.8 101,018 - -2.9 101,108 - DZA65_RS00420 0.14 +1.3 101,112 - -0.1 101,138 - DZA65_RS00420 0.15 +2.0 101,138 - DZA65_RS00420 0.15 -0.8 101,138 - DZA65_RS00420 0.15 -1.5 101,148 - DZA65_RS00420 0.15 -1.8 101,212 - DZA65_RS00420 0.18 -0.8 101,269 + DZA65_RS00420 0.20 -0.3 101,275 + DZA65_RS00420 0.20 -0.7 101,310 - DZA65_RS00420 0.22 -1.1 101,310 - DZA65_RS00420 0.22 -1.4 101,310 - DZA65_RS00420 0.22 -0.1 101,430 - DZA65_RS00420 0.27 -0.9 101,430 - DZA65_RS00420 0.27 -1.5 101,430 - DZA65_RS00420 0.27 -2.8 101,881 - DZA65_RS00420 0.45 +0.2 101,885 - DZA65_RS00420 0.45 -2.9 101,885 - DZA65_RS00420 0.45 -2.2 101,989 - DZA65_RS00420 0.50 -1.8 102,086 - DZA65_RS00420 0.54 -1.7 102,089 - DZA65_RS00420 0.54 -1.6 102,161 - DZA65_RS00420 0.57 -1.5 102,427 - DZA65_RS00420 0.68 -1.7 102,427 - DZA65_RS00420 0.68 +1.9 102,482 - DZA65_RS00420 0.70 +0.5 102,507 - DZA65_RS00420 0.71 -0.3 102,531 + DZA65_RS00420 0.72 -1.2 102,576 - DZA65_RS00420 0.74 -2.0 102,603 + DZA65_RS00420 0.75 +1.1 102,604 - DZA65_RS00420 0.75 -0.2 102,604 - DZA65_RS00420 0.75 +1.1 102,647 - DZA65_RS00420 0.77 -1.2 102,647 - DZA65_RS00420 0.77 -1.7 102,647 - DZA65_RS00420 0.77 -0.1 102,679 + DZA65_RS00420 0.78 -0.6 102,689 - DZA65_RS00420 0.78 -1.3 102,698 - DZA65_RS00420 0.79 -0.7 102,698 - DZA65_RS00420 0.79 -1.0 102,749 - DZA65_RS00420 0.81 +0.3 102,749 - DZA65_RS00420 0.81 -0.3 102,933 + DZA65_RS00420 0.88 -0.3 102,934 - DZA65_RS00420 0.89 +0.1 102,972 + -0.4 102,972 + -0.7 102,979 + +0.3 102,979 + +1.2 102,980 - -0.6 102,980 - -0.7 102,980 - +0.2 102,980 - +0.4 102,980 - -0.5 102,980 - -0.5 103,063 - +0.7 103,097 - -1.5 103,117 - -0.7 103,201 - -2.0 103,201 - -2.2 103,205 + -0.5 103,206 - +0.7 103,212 - +0.7 103,228 + -0.1 103,228 + -0.1 103,228 + +0.4 103,229 - +1.4 103,229 - -0.8 103,269 - +1.2 103,308 + +1.1 103,308 + -1.0 103,308 + -0.1 103,308 + -0.6 103,308 + -1.4 103,309 - -0.7 103,309 - -0.7 103,309 - +0.4 103,309 - +0.8 103,309 - -0.0 103,309 - -0.7 103,309 - +0.1 103,309 - +0.3 103,309 - +1.2 103,309 - +0.7 103,309 - -1.1 103,312 + -1.2 103,312 + -1.7 103,313 - +0.7 103,313 - +0.1 103,313 - +0.1 103,313 - -0.8 103,313 - +0.6 103,334 - +0.2 103,393 - -0.2 103,408 - +0.9 103,408 - +0.1 103,408 - -0.3 103,435 + -0.3 103,435 + -0.8 103,435 + -0.8 103,435 + +0.3 103,435 + -0.5 103,435 + -1.7 103,436 - +0.9 103,436 - -0.1 103,436 - -0.4 103,462 + -0.9 103,463 - +0.9 103,463 - -1.8 103,485 + -1.3 103,485 + +0.2 103,485 + -0.5 103,485 + -0.0 103,485 + +1.8 103,485 + +1.1 103,485 + -1.5 103,486 - +0.9 103,486 - +0.1 103,486 - +0.2 103,486 - -0.3 103,486 - +0.7 103,496 + +1.8 103,503 - -0.1 103,583 - DZA65_RS00425 0.12 +0.5 103,589 + DZA65_RS00425 0.12 +1.2 103,590 - DZA65_RS00425 0.12 -0.6 103,590 - DZA65_RS00425 0.12 +2.0 103,590 - DZA65_RS00425 0.12 +0.9 103,590 - DZA65_RS00425 0.12 +0.7 103,590 - DZA65_RS00425 0.12 +0.3 103,600 + DZA65_RS00425 0.13 -0.3 103,641 + DZA65_RS00425 0.16 +0.5 103,641 + DZA65_RS00425 0.16 +0.3 103,642 - DZA65_RS00425 0.16 -1.8 103,642 - DZA65_RS00425 0.16 -0.2 103,642 - DZA65_RS00425 0.16 -0.3 103,642 - DZA65_RS00425 0.16 +0.4 103,642 - DZA65_RS00425 0.16 -1.3 103,642 - DZA65_RS00425 0.16 +0.4 103,642 - DZA65_RS00425 0.16 -3.1 103,642 - DZA65_RS00425 0.16 -1.6 103,649 + DZA65_RS00425 0.16 -0.5 103,658 + DZA65_RS00425 0.17 +1.3 103,659 - DZA65_RS00425 0.17 +0.7 103,738 + DZA65_RS00425 0.23 +0.2 103,738 + DZA65_RS00425 0.23 +0.3 103,739 - DZA65_RS00425 0.23 -1.1 103,739 - DZA65_RS00425 0.23 +0.2
Or see this region's nucleotide sequence