Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00285 and DZA65_RS00290 are separated by 273 nucleotides DZA65_RS00290 and DZA65_RS00295 are separated by 335 nucleotides
DZA65_RS00285: DZA65_RS00285 - superoxide dismutase [Mn], at 69,441 to 70,067
_RS00285
DZA65_RS00290: DZA65_RS00290 - formate dehydrogenase accessory sulfurtransferase FdhD, at 70,341 to 71,195
_RS00290
DZA65_RS00295: DZA65_RS00295 - aldehyde dehydrogenase, at 71,531 to 73,066
_RS00295
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1
2 at 69.359 kb on + strand at 69.360 kb on - strand at 69.376 kb on - strand at 69.386 kb on - strand at 69.417 kb on + strand at 69.438 kb on + strand at 69.438 kb on + strand at 69.486 kb on + strand at 69.541 kb on + strand, within DZA65_RS00285 at 69.957 kb on - strand, within DZA65_RS00285 at 70.112 kb on + strand at 70.112 kb on + strand at 70.181 kb on + strand at 70.182 kb on - strand at 70.188 kb on + strand at 70.189 kb on - strand at 70.189 kb on - strand at 70.199 kb on + strand at 70.200 kb on - strand at 70.200 kb on - strand at 70.200 kb on - strand at 70.200 kb on - strand at 70.203 kb on + strand at 70.203 kb on + strand at 70.203 kb on + strand at 70.203 kb on + strand at 70.204 kb on - strand at 70.204 kb on - strand at 70.207 kb on + strand at 70.227 kb on + strand at 70.269 kb on + strand at 70.273 kb on - strand at 70.273 kb on - strand at 70.303 kb on - strand at 70.308 kb on + strand at 70.308 kb on + strand at 70.308 kb on + strand at 70.308 kb on + strand at 70.309 kb on - strand at 70.309 kb on - strand at 70.312 kb on + strand at 70.312 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.318 kb on + strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.319 kb on - strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.323 kb on + strand at 70.324 kb on - strand at 70.324 kb on - strand at 70.324 kb on - strand at 70.324 kb on - strand at 70.368 kb on - strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.369 kb on + strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.370 kb on - strand at 70.511 kb on - strand, within DZA65_RS00290 at 70.511 kb on - strand, within DZA65_RS00290 at 70.869 kb on + strand, within DZA65_RS00290 at 70.870 kb on - strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.895 kb on + strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.896 kb on - strand, within DZA65_RS00290 at 70.899 kb on + strand, within DZA65_RS00290 at 70.899 kb on + strand, within DZA65_RS00290 at 70.900 kb on - strand, within DZA65_RS00290 at 70.900 kb on - strand, within DZA65_RS00290 at 70.900 kb on - strand, within DZA65_RS00290 at 70.910 kb on + strand, within DZA65_RS00290 at 70.911 kb on - strand, within DZA65_RS00290 at 70.921 kb on + strand, within DZA65_RS00290 at 70.921 kb on + strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 70.922 kb on - strand, within DZA65_RS00290 at 71.010 kb on + strand at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.010 kb on + strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.011 kb on - strand, within DZA65_RS00290 at 71.021 kb on + strand, within DZA65_RS00290 at 71.022 kb on - strand, within DZA65_RS00290 at 71.022 kb on - strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.029 kb on + strand, within DZA65_RS00290 at 71.030 kb on - strand, within DZA65_RS00290 at 71.030 kb on - strand, within DZA65_RS00290 at 71.030 kb on - strand, within DZA65_RS00290 at 71.183 kb on + strand at 71.183 kb on + strand at 71.183 kb on + strand at 71.184 kb on - strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.204 kb on + strand at 71.205 kb on - strand at 71.205 kb on - strand at 71.269 kb on + strand at 71.275 kb on + strand at 71.275 kb on + strand at 71.288 kb on - strand at 71.339 kb on - strand at 71.339 kb on - strand at 71.350 kb on - strand at 71.367 kb on + strand at 71.367 kb on + strand at 71.367 kb on + strand at 71.367 kb on + strand at 71.377 kb on - strand at 71.383 kb on + strand at 71.384 kb on - strand at 71.400 kb on + strand at 71.400 kb on + strand at 71.400 kb on + strand at 71.412 kb on - strand at 71.412 kb on - strand at 71.412 kb on - strand at 71.419 kb on + strand at 71.488 kb on + strand at 71.488 kb on + strand at 71.489 kb on - strand at 71.489 kb on - strand at 71.489 kb on - strand at 71.543 kb on - strand at 71.556 kb on + strand at 71.556 kb on + strand at 71.556 kb on + strand at 71.557 kb on - strand at 71.571 kb on - strand at 71.571 kb on - strand at 71.585 kb on - strand at 71.648 kb on + strand at 71.648 kb on + strand at 71.648 kb on + strand at 71.648 kb on + strand at 71.649 kb on - strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.651 kb on + strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.652 kb on - strand at 71.707 kb on + strand, within DZA65_RS00295 at 71.773 kb on + strand, within DZA65_RS00295 at 71.774 kb on - strand, within DZA65_RS00295 at 71.774 kb on - strand, within DZA65_RS00295 at 71.774 kb on - strand, within DZA65_RS00295 at 71.805 kb on + strand, within DZA65_RS00295 at 71.806 kb on - strand, within DZA65_RS00295 at 71.990 kb on + strand, within DZA65_RS00295 at 71.990 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.165 kb on + strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295 at 72.166 kb on - strand, within DZA65_RS00295
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 69,359 + -1.3 69,360 - +0.4 69,376 - -1.8 69,386 - +1.2 69,417 + -0.8 69,438 + -0.2 69,438 + -0.8 69,486 + -0.9 69,541 + DZA65_RS00285 0.16 -1.7 69,957 - DZA65_RS00285 0.82 -1.3 70,112 + -0.3 70,112 + -1.3 70,181 + +0.2 70,182 - +0.1 70,188 + +1.7 70,189 - +0.3 70,189 - +0.1 70,199 + -0.7 70,200 - +0.1 70,200 - +0.2 70,200 - -0.5 70,200 - -0.1 70,203 + -0.1 70,203 + +0.4 70,203 + -1.9 70,203 + -0.7 70,204 - -0.1 70,204 - -0.7 70,207 + +0.1 70,227 + +0.7 70,269 + -0.0 70,273 - -0.7 70,273 - -1.1 70,303 - -0.4 70,308 + -0.8 70,308 + -0.3 70,308 + -1.7 70,308 + +1.0 70,309 - +0.4 70,309 - -0.7 70,312 + +1.3 70,312 + +0.2 70,318 + -0.0 70,318 + -1.0 70,318 + +1.4 70,318 + -0.8 70,318 + -0.3 70,318 + +0.4 70,318 + +0.2 70,318 + -0.6 70,318 + -1.9 70,318 + -0.7 70,319 - -0.6 70,319 - -0.7 70,319 - +0.9 70,319 - +0.5 70,319 - +0.4 70,319 - -0.5 70,319 - -0.4 70,319 - -1.1 70,323 + -0.1 70,323 + -0.1 70,323 + +0.3 70,323 + -1.3 70,323 + -0.2 70,323 + +0.9 70,323 + -1.9 70,323 + -0.2 70,324 - -0.5 70,324 - -0.6 70,324 - +0.2 70,324 - +0.4 70,368 - +1.1 70,369 + +0.8 70,369 + +2.2 70,369 + -0.2 70,369 + -0.2 70,369 + +0.2 70,369 + -0.9 70,369 + +1.1 70,369 + -0.7 70,369 + -1.8 70,369 + -2.1 70,369 + +1.1 70,369 + -0.0 70,369 + +0.3 70,369 + +0.1 70,369 + -1.3 70,369 + +1.9 70,369 + -0.7 70,369 + -0.3 70,369 + -0.9 70,369 + -0.3 70,369 + -0.7 70,369 + +0.3 70,369 + -1.1 70,369 + -0.3 70,370 - +0.1 70,370 - +0.5 70,370 - -0.2 70,370 - +0.3 70,370 - +0.1 70,370 - -0.1 70,370 - -1.8 70,370 - +1.7 70,370 - -0.1 70,370 - +0.2 70,370 - -0.3 70,370 - +0.4 70,370 - -1.3 70,370 - +1.0 70,370 - +1.1 70,370 - -0.1 70,370 - -0.3 70,370 - -0.9 70,370 - +0.1 70,370 - -0.9 70,370 - -1.7 70,511 - DZA65_RS00290 0.20 +0.5 70,511 - DZA65_RS00290 0.20 -0.5 70,869 + DZA65_RS00290 0.62 -0.8 70,870 - DZA65_RS00290 0.62 +0.1 70,895 + DZA65_RS00290 0.65 +0.8 70,895 + DZA65_RS00290 0.65 -1.5 70,895 + DZA65_RS00290 0.65 -0.4 70,895 + DZA65_RS00290 0.65 +0.4 70,895 + DZA65_RS00290 0.65 -1.9 70,895 + DZA65_RS00290 0.65 -0.8 70,896 - DZA65_RS00290 0.65 +0.4 70,896 - DZA65_RS00290 0.65 -1.5 70,896 - DZA65_RS00290 0.65 +0.5 70,896 - DZA65_RS00290 0.65 -0.2 70,896 - DZA65_RS00290 0.65 -0.3 70,899 + DZA65_RS00290 0.65 -0.1 70,899 + DZA65_RS00290 0.65 -0.3 70,900 - DZA65_RS00290 0.65 +0.2 70,900 - DZA65_RS00290 0.65 +0.2 70,900 - DZA65_RS00290 0.65 -0.9 70,910 + DZA65_RS00290 0.67 -0.6 70,911 - DZA65_RS00290 0.67 -0.5 70,921 + DZA65_RS00290 0.68 +1.4 70,921 + DZA65_RS00290 0.68 +0.2 70,922 - DZA65_RS00290 0.68 -1.5 70,922 - DZA65_RS00290 0.68 -0.3 70,922 - DZA65_RS00290 0.68 -0.7 70,922 - DZA65_RS00290 0.68 +0.1 71,010 + -0.9 71,010 + DZA65_RS00290 0.78 +0.0 71,010 + DZA65_RS00290 0.78 -0.5 71,010 + DZA65_RS00290 0.78 -0.3 71,010 + DZA65_RS00290 0.78 -0.3 71,010 + DZA65_RS00290 0.78 -0.8 71,010 + DZA65_RS00290 0.78 +0.4 71,010 + DZA65_RS00290 0.78 -0.1 71,010 + DZA65_RS00290 0.78 -1.0 71,010 + DZA65_RS00290 0.78 +0.1 71,010 + DZA65_RS00290 0.78 +0.2 71,010 + DZA65_RS00290 0.78 -0.7 71,010 + DZA65_RS00290 0.78 -0.1 71,011 - DZA65_RS00290 0.78 -1.0 71,011 - DZA65_RS00290 0.78 -0.0 71,011 - DZA65_RS00290 0.78 -0.5 71,011 - DZA65_RS00290 0.78 -0.9 71,011 - DZA65_RS00290 0.78 +0.7 71,011 - DZA65_RS00290 0.78 -0.3 71,021 + DZA65_RS00290 0.80 +0.8 71,022 - DZA65_RS00290 0.80 -0.3 71,022 - DZA65_RS00290 0.80 -0.3 71,029 + DZA65_RS00290 0.80 +0.9 71,029 + DZA65_RS00290 0.80 +0.2 71,029 + DZA65_RS00290 0.80 +0.2 71,029 + DZA65_RS00290 0.80 +1.4 71,029 + DZA65_RS00290 0.80 +0.3 71,029 + DZA65_RS00290 0.80 -1.1 71,029 + DZA65_RS00290 0.80 +0.1 71,030 - DZA65_RS00290 0.81 -1.3 71,030 - DZA65_RS00290 0.81 -0.0 71,030 - DZA65_RS00290 0.81 -0.5 71,183 + +1.7 71,183 + +0.1 71,183 + -0.7 71,184 - -0.9 71,204 + +1.3 71,204 + +0.7 71,204 + -0.3 71,204 + -0.3 71,204 + +0.5 71,204 + +0.2 71,204 + +1.1 71,205 - -1.3 71,205 - +0.4 71,269 + -0.7 71,275 + +1.2 71,275 + -0.6 71,288 - +0.1 71,339 - -0.2 71,339 - -0.2 71,350 - -0.7 71,367 + -1.1 71,367 + -0.1 71,367 + +0.1 71,367 + -1.5 71,377 - -2.7 71,383 + -0.3 71,384 - -0.5 71,400 + +0.1 71,400 + -1.3 71,400 + -1.1 71,412 - -0.3 71,412 - +0.1 71,412 - +0.8 71,419 + -0.2 71,488 + -0.2 71,488 + -1.9 71,489 - -0.3 71,489 - -0.8 71,489 - +0.2 71,543 - +0.9 71,556 + -0.4 71,556 + -0.5 71,556 + -1.8 71,557 - +1.7 71,571 - +0.6 71,571 - -0.8 71,585 - +1.3 71,648 + -0.3 71,648 + +0.1 71,648 + -0.9 71,648 + +0.2 71,649 - -0.3 71,651 + -0.1 71,651 + -1.5 71,651 + +0.0 71,651 + +0.1 71,651 + +0.8 71,652 - +0.2 71,652 - +1.4 71,652 - -0.8 71,652 - -0.1 71,652 - -0.1 71,652 - -0.9 71,652 - +0.4 71,652 - +0.1 71,652 - +0.1 71,707 + DZA65_RS00295 0.11 -0.1 71,773 + DZA65_RS00295 0.16 -0.1 71,774 - DZA65_RS00295 0.16 +0.0 71,774 - DZA65_RS00295 0.16 -0.8 71,774 - DZA65_RS00295 0.16 -0.6 71,805 + DZA65_RS00295 0.18 -1.4 71,806 - DZA65_RS00295 0.18 +0.2 71,990 + DZA65_RS00295 0.30 +0.8 71,990 + DZA65_RS00295 0.30 +1.0 72,165 + DZA65_RS00295 0.41 -1.9 72,165 + DZA65_RS00295 0.41 -0.9 72,165 + DZA65_RS00295 0.41 +1.1 72,165 + DZA65_RS00295 0.41 +0.6 72,165 + DZA65_RS00295 0.41 -0.7 72,165 + DZA65_RS00295 0.41 -0.7 72,165 + DZA65_RS00295 0.41 -0.0 72,165 + DZA65_RS00295 0.41 -0.1 72,166 - DZA65_RS00295 0.41 -0.1 72,166 - DZA65_RS00295 0.41 -0.3 72,166 - +0.1 72,166 - DZA65_RS00295 0.41 +0.1 72,166 - DZA65_RS00295 0.41 -1.7 72,166 - DZA65_RS00295 0.41 +0.6 72,166 - DZA65_RS00295 0.41 -0.3 72,166 - DZA65_RS00295 0.41 -0.5 72,166 - DZA65_RS00295 0.41 -1.9 72,166 - DZA65_RS00295 0.41 -0.7 72,166 - DZA65_RS00295 0.41 -0.5 72,166 - DZA65_RS00295 0.41 +0.9
Or see this region's nucleotide sequence