Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00235 and DZA65_RS00240 are separated by 2 nucleotides DZA65_RS00240 and DZA65_RS00245 are separated by 28 nucleotides DZA65_RS00245 and DZA65_RS00250 are separated by 27 nucleotides DZA65_RS00250 and DZA65_RS00255 are separated by 16 nucleotides
DZA65_RS00235: DZA65_RS00235 - urea carboxylase-associated family protein, at 57,368 to 58,003
_RS00235
DZA65_RS00240: DZA65_RS00240 - urea carboxylase-associated family protein, at 58,006 to 58,725
_RS00240
DZA65_RS00245: DZA65_RS00245 - ABC transporter ATP-binding protein, at 58,754 to 59,530
_RS00245
DZA65_RS00250: DZA65_RS00250 - ABC transporter permease subunit, at 59,558 to 60,370
_RS00250
DZA65_RS00255: DZA65_RS00255 - ABC transporter substrate-binding protein, at 60,387 to 61,442
_RS00255
Position (kb) 58
59
60 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.855 kb on + strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.856 kb on - strand, within DZA65_RS00235 at 57.880 kb on + strand, within DZA65_RS00235 at 57.881 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 57.899 kb on - strand, within DZA65_RS00235 at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.034 kb on + strand at 58.035 kb on - strand at 58.037 kb on + strand at 58.037 kb on + strand at 58.037 kb on + strand at 58.037 kb on + strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.038 kb on - strand at 58.203 kb on + strand, within DZA65_RS00240 at 58.204 kb on - strand, within DZA65_RS00240 at 58.332 kb on - strand, within DZA65_RS00240 at 58.332 kb on - strand, within DZA65_RS00240 at 58.397 kb on + strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.398 kb on - strand, within DZA65_RS00240 at 58.497 kb on + strand, within DZA65_RS00240 at 58.497 kb on + strand, within DZA65_RS00240 at 58.498 kb on - strand, within DZA65_RS00240 at 58.498 kb on - strand, within DZA65_RS00240 at 58.498 kb on - strand, within DZA65_RS00240 at 58.515 kb on - strand, within DZA65_RS00240 at 58.515 kb on - strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.577 kb on + strand, within DZA65_RS00240 at 58.578 kb on - strand, within DZA65_RS00240 at 58.602 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.604 kb on + strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.605 kb on - strand, within DZA65_RS00240 at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.712 kb on + strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.713 kb on - strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.737 kb on + strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.738 kb on - strand at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.833 kb on + strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.834 kb on - strand, within DZA65_RS00245 at 58.973 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.121 kb on + strand, within DZA65_RS00245 at 59.122 kb on - strand, within DZA65_RS00245 at 59.122 kb on - strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.125 kb on + strand, within DZA65_RS00245 at 59.126 kb on - strand, within DZA65_RS00245 at 59.126 kb on - strand, within DZA65_RS00245 at 59.286 kb on + strand, within DZA65_RS00245 at 59.493 kb on + strand at 59.494 kb on - strand at 59.513 kb on - strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.530 kb on + strand at 59.531 kb on - strand at 59.531 kb on - strand at 59.571 kb on + strand at 59.571 kb on + strand at 59.571 kb on + strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.572 kb on - strand at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.649 kb on + strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.650 kb on - strand, within DZA65_RS00250 at 59.676 kb on + strand, within DZA65_RS00250 at 59.812 kb on + strand, within DZA65_RS00250 at 59.812 kb on + strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.813 kb on - strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.892 kb on + strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.893 kb on - strand, within DZA65_RS00250 at 59.954 kb on + strand, within DZA65_RS00250 at 59.954 kb on + strand, within DZA65_RS00250 at 59.955 kb on - strand, within DZA65_RS00250 at 60.105 kb on - strand, within DZA65_RS00250 at 60.285 kb on + strand, within DZA65_RS00250 at 60.286 kb on - strand, within DZA65_RS00250 at 60.286 kb on - strand, within DZA65_RS00250 at 60.305 kb on + strand at 60.351 kb on + strand at 60.351 kb on + strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.352 kb on - strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.388 kb on + strand at 60.389 kb on - strand at 60.389 kb on - strand at 60.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 57,855 + DZA65_RS00235 0.77 -0.7 57,855 + DZA65_RS00235 0.77 -0.8 57,855 + DZA65_RS00235 0.77 +1.5 57,855 + DZA65_RS00235 0.77 -0.4 57,855 + DZA65_RS00235 0.77 +0.4 57,856 - DZA65_RS00235 0.77 -0.2 57,856 - DZA65_RS00235 0.77 -0.2 57,856 - DZA65_RS00235 0.77 +1.1 57,856 - DZA65_RS00235 0.77 -2.6 57,856 - DZA65_RS00235 0.77 +0.7 57,856 - DZA65_RS00235 0.77 -0.8 57,856 - DZA65_RS00235 0.77 +0.5 57,880 + DZA65_RS00235 0.81 +0.2 57,881 - DZA65_RS00235 0.81 +0.7 57,899 - DZA65_RS00235 0.83 -0.8 57,899 - DZA65_RS00235 0.83 -0.3 57,899 - DZA65_RS00235 0.83 -0.7 57,899 - DZA65_RS00235 0.83 -0.4 57,899 - DZA65_RS00235 0.83 +0.1 58,034 + +0.2 58,034 + -1.2 58,034 + +0.7 58,034 + +0.0 58,034 + +0.2 58,034 + -1.0 58,035 - -2.9 58,037 + -0.7 58,037 + -0.7 58,037 + -0.5 58,037 + -1.1 58,038 - -0.9 58,038 - -0.5 58,038 - -0.5 58,038 - -0.3 58,038 - -0.3 58,038 - +0.5 58,203 + DZA65_RS00240 0.27 -2.9 58,204 - DZA65_RS00240 0.28 +0.2 58,332 - DZA65_RS00240 0.45 -0.4 58,332 - DZA65_RS00240 0.45 +1.0 58,397 + DZA65_RS00240 0.54 -1.8 58,398 - DZA65_RS00240 0.54 +0.4 58,398 - DZA65_RS00240 0.54 +0.1 58,398 - DZA65_RS00240 0.54 -0.2 58,398 - DZA65_RS00240 0.54 +0.4 58,497 + DZA65_RS00240 0.68 -0.2 58,497 + DZA65_RS00240 0.68 -1.2 58,498 - DZA65_RS00240 0.68 +0.1 58,498 - DZA65_RS00240 0.68 -1.9 58,498 - DZA65_RS00240 0.68 +0.1 58,515 - DZA65_RS00240 0.71 -0.9 58,515 - DZA65_RS00240 0.71 -1.7 58,577 + DZA65_RS00240 0.79 -0.5 58,577 + DZA65_RS00240 0.79 +0.7 58,577 + DZA65_RS00240 0.79 -0.2 58,578 - DZA65_RS00240 0.79 -1.5 58,602 + DZA65_RS00240 0.83 +1.1 58,604 + DZA65_RS00240 0.83 -0.3 58,604 + DZA65_RS00240 0.83 -0.8 58,604 + DZA65_RS00240 0.83 -1.9 58,604 + DZA65_RS00240 0.83 -0.8 58,604 + DZA65_RS00240 0.83 +0.5 58,604 + DZA65_RS00240 0.83 +0.5 58,604 + DZA65_RS00240 0.83 +0.3 58,604 + DZA65_RS00240 0.83 +0.3 58,605 - DZA65_RS00240 0.83 +0.7 58,605 - DZA65_RS00240 0.83 +0.3 58,605 - DZA65_RS00240 0.83 +0.1 58,605 - DZA65_RS00240 0.83 -0.4 58,605 - DZA65_RS00240 0.83 +1.4 58,605 - DZA65_RS00240 0.83 +0.9 58,605 - DZA65_RS00240 0.83 +0.1 58,712 + -0.6 58,712 + +1.1 58,712 + +1.7 58,712 + -1.0 58,713 - +0.3 58,713 - +0.6 58,713 - +0.4 58,737 + -1.3 58,737 + +1.0 58,737 + -0.0 58,737 + -2.0 58,737 + -0.2 58,737 + -1.2 58,737 + -2.3 58,738 - +0.8 58,738 - -0.5 58,738 - +0.0 58,738 - +0.2 58,738 - -1.7 58,738 - -1.0 58,738 - -0.9 58,738 - -0.3 58,738 - -1.1 58,738 - -0.9 58,738 - +1.1 58,738 - +0.1 58,738 - -0.7 58,833 + DZA65_RS00245 0.10 +0.1 58,833 + DZA65_RS00245 0.10 +0.7 58,833 + DZA65_RS00245 0.10 -0.1 58,834 - DZA65_RS00245 0.10 -0.1 58,834 - DZA65_RS00245 0.10 +0.5 58,834 - DZA65_RS00245 0.10 -1.2 58,834 - DZA65_RS00245 0.10 -1.5 58,834 - DZA65_RS00245 0.10 -0.2 58,973 + DZA65_RS00245 0.28 +0.2 59,121 + DZA65_RS00245 0.47 +0.2 59,121 + DZA65_RS00245 0.47 -0.3 59,121 + DZA65_RS00245 0.47 -1.2 59,122 - DZA65_RS00245 0.47 +0.5 59,122 - DZA65_RS00245 0.47 -0.2 59,125 + DZA65_RS00245 0.48 +1.7 59,125 + DZA65_RS00245 0.48 +0.4 59,125 + DZA65_RS00245 0.48 +0.4 59,125 + DZA65_RS00245 0.48 +0.9 59,126 - DZA65_RS00245 0.48 +1.7 59,126 - DZA65_RS00245 0.48 -0.7 59,286 + DZA65_RS00245 0.68 +1.2 59,493 + -0.0 59,494 - -0.3 59,513 - -0.6 59,530 + +0.7 59,530 + -0.4 59,530 + -0.5 59,531 - -0.7 59,531 - -0.7 59,571 + -0.3 59,571 + -0.3 59,571 + -0.2 59,572 - -0.4 59,572 - +0.1 59,572 - -0.4 59,572 - -0.5 59,572 - -0.3 59,649 + DZA65_RS00250 0.11 -2.2 59,649 + DZA65_RS00250 0.11 -0.3 59,649 + DZA65_RS00250 0.11 +0.1 59,649 + DZA65_RS00250 0.11 -1.7 59,649 + DZA65_RS00250 0.11 +0.1 59,649 + DZA65_RS00250 0.11 +0.3 59,649 + DZA65_RS00250 0.11 -0.1 59,650 - DZA65_RS00250 0.11 -2.0 59,650 - DZA65_RS00250 0.11 +0.0 59,650 - DZA65_RS00250 0.11 -0.1 59,650 - DZA65_RS00250 0.11 -1.2 59,676 + DZA65_RS00250 0.15 +0.5 59,812 + DZA65_RS00250 0.31 -1.8 59,812 + DZA65_RS00250 0.31 -0.2 59,813 - DZA65_RS00250 0.31 -1.2 59,813 - DZA65_RS00250 0.31 +0.3 59,813 - DZA65_RS00250 0.31 -0.2 59,892 + DZA65_RS00250 0.41 -0.5 59,892 + DZA65_RS00250 0.41 -1.1 59,892 + DZA65_RS00250 0.41 -0.3 59,892 + DZA65_RS00250 0.41 -0.7 59,892 + DZA65_RS00250 0.41 -1.8 59,892 + DZA65_RS00250 0.41 +0.2 59,892 + DZA65_RS00250 0.41 +2.2 59,893 - DZA65_RS00250 0.41 +1.9 59,893 - DZA65_RS00250 0.41 +1.4 59,893 - DZA65_RS00250 0.41 +0.7 59,893 - DZA65_RS00250 0.41 -0.8 59,893 - DZA65_RS00250 0.41 -0.1 59,893 - DZA65_RS00250 0.41 -0.1 59,893 - DZA65_RS00250 0.41 +0.3 59,893 - DZA65_RS00250 0.41 -0.9 59,893 - DZA65_RS00250 0.41 +0.2 59,893 - DZA65_RS00250 0.41 -0.8 59,893 - DZA65_RS00250 0.41 -0.5 59,893 - DZA65_RS00250 0.41 +0.4 59,893 - DZA65_RS00250 0.41 +0.9 59,893 - DZA65_RS00250 0.41 +0.5 59,893 - DZA65_RS00250 0.41 +0.8 59,893 - DZA65_RS00250 0.41 -0.7 59,954 + DZA65_RS00250 0.49 -0.3 59,954 + DZA65_RS00250 0.49 +1.2 59,955 - DZA65_RS00250 0.49 +1.1 60,105 - DZA65_RS00250 0.67 -1.5 60,285 + DZA65_RS00250 0.89 +0.7 60,286 - DZA65_RS00250 0.90 -1.1 60,286 - DZA65_RS00250 0.90 -0.1 60,305 + -0.1 60,351 + +0.7 60,351 + +1.1 60,352 - +0.1 60,352 - +0.2 60,352 - +0.2 60,388 + -0.5 60,388 + -0.3 60,388 + -0.2 60,388 + -0.9 60,388 + +0.5 60,388 + +0.3 60,388 + +1.1 60,389 - +0.1 60,389 - -0.2 60,389 - +1.2
Or see this region's nucleotide sequence