Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00130

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
29,782	-	DZA65_RS00125	0.63	+0.1
29,810	+	DZA65_RS00125	0.65	+1.4
29,810	+	DZA65_RS00125	0.65	-1.3
29,811	-	DZA65_RS00125	0.65	-1.8
29,817	+	DZA65_RS00125	0.66	+0.8
29,817	+	DZA65_RS00125	0.66	-0.2
29,817	+	DZA65_RS00125	0.66	+0.1
29,818	-	DZA65_RS00125	0.66	-0.5
29,818	-	DZA65_RS00125	0.66	-0.0
29,818	-	DZA65_RS00125	0.66	-0.9
29,858	+	DZA65_RS00125	0.69	-0.9
29,859	-	DZA65_RS00125	0.69	-2.3
29,861	+	DZA65_RS00125	0.69	-1.3
29,862	-	DZA65_RS00125	0.69	-1.1
29,862	-	DZA65_RS00125	0.69	-1.4
29,873	+	DZA65_RS00125	0.70	-0.6
29,873	+	DZA65_RS00125	0.70	+0.3
29,875	+	DZA65_RS00125	0.70	-0.3
29,876	-	DZA65_RS00125	0.70	-1.1
29,876	-	DZA65_RS00125	0.70	+0.5
29,903	+	DZA65_RS00125	0.72	-1.1
29,927	+	DZA65_RS00125	0.74	-0.8
29,928	-	DZA65_RS00125	0.74	+0.3
29,928	-	DZA65_RS00125	0.74	+0.8
29,928	-	DZA65_RS00125	0.74	+1.3
29,928	-	DZA65_RS00125	0.74	-0.2
29,928	-	DZA65_RS00125	0.74	+1.2
29,930	-	DZA65_RS00125	0.74	-0.7
30,263	+			-1.0
30,336	-			-0.5
30,450	-			-0.3
30,450	-			+0.8
30,676	+			-0.6
30,679	+			-0.8
30,747	-			+0.0
30,772	+			-0.1
30,773	-			+0.8
30,773	-			-0.1
30,773	-			-1.3
30,895	+	DZA65_RS00130	0.17	+0.5
30,896	-	DZA65_RS00130	0.17	+0.2
30,968	-	DZA65_RS00130	0.25	-0.1
30,968	-	DZA65_RS00130	0.25	-1.0
30,995	+	DZA65_RS00130	0.28	-0.3
30,995	+	DZA65_RS00130	0.28	+0.5
30,996	-	DZA65_RS00130	0.28	-0.1
30,996	-	DZA65_RS00130	0.28	+0.1
31,104	+	DZA65_RS00130	0.40	+0.8
31,123	+	DZA65_RS00130	0.43	+0.1
31,138	+	DZA65_RS00130	0.44	-0.1
31,138	+	DZA65_RS00130	0.44	-0.5
31,139	-	DZA65_RS00130	0.44	+0.1
31,162	+	DZA65_RS00130	0.47	-1.2
31,221	+	DZA65_RS00130	0.54	-1.1
31,221	+	DZA65_RS00130	0.54	+0.5
31,222	-	DZA65_RS00130	0.54	+0.2
31,235	+	DZA65_RS00130	0.55	+0.3
31,235	+	DZA65_RS00130	0.55	-0.7
31,235	+	DZA65_RS00130	0.55	+0.1
31,235	+	DZA65_RS00130	0.55	-0.3
31,235	+	DZA65_RS00130	0.55	+0.3
31,236	-	DZA65_RS00130	0.55	+1.1
31,236	-	DZA65_RS00130	0.55	+0.2
31,236	-	DZA65_RS00130	0.55	+0.4
31,236	-	DZA65_RS00130	0.55	+0.7
31,236	-	DZA65_RS00130	0.55	-0.0
31,236	-	DZA65_RS00130	0.55	-0.1
31,236	-	DZA65_RS00130	0.55	-0.4
31,236	-	DZA65_RS00130	0.55	+0.1
31,259	-	DZA65_RS00130	0.58	+0.1
31,312	+	DZA65_RS00130	0.64	+0.4
31,312	+	DZA65_RS00130	0.64	+0.0
31,312	+	DZA65_RS00130	0.64	-2.6
31,312	+	DZA65_RS00130	0.64	-0.1
31,312	+	DZA65_RS00130	0.64	+1.4
31,313	-	DZA65_RS00130	0.64	+1.2
31,313	-	DZA65_RS00130	0.64	+0.7
31,341	+	DZA65_RS00130	0.67	+0.9
31,341	+	DZA65_RS00130	0.67	+0.7
31,341	+	DZA65_RS00130	0.67	+1.1
31,341	+	DZA65_RS00130	0.67	-1.7
31,341	+	DZA65_RS00130	0.67	-0.1
31,341	+	DZA65_RS00130	0.67	-0.4
31,342	-	DZA65_RS00130	0.67	-0.3
31,378	+	DZA65_RS00130	0.71	-0.7
31,379	-	DZA65_RS00130	0.71	-0.0
31,379	-	DZA65_RS00130	0.71	+0.1
31,379	-	DZA65_RS00130	0.71	+1.8
31,379	-	DZA65_RS00130	0.71	-1.7
31,435	+	DZA65_RS00130	0.77	-0.2
31,435	+	DZA65_RS00130	0.77	+0.5
31,435	+	DZA65_RS00130	0.77	+0.1
31,435	+	DZA65_RS00130	0.77	+0.9
31,435	+	DZA65_RS00130	0.77	-0.4
31,435	+			+1.7
31,435	+	DZA65_RS00130	0.77	+1.9
31,435	+	DZA65_RS00130	0.77	-0.2
31,436	-	DZA65_RS00130	0.77	-0.8
31,436	-	DZA65_RS00130	0.77	-0.7
31,436	-	DZA65_RS00130	0.77	-0.7
31,436	-	DZA65_RS00130	0.77	-0.1
31,436	-	DZA65_RS00130	0.77	-0.5
31,436	-	DZA65_RS00130	0.77	-0.4
31,436	-	DZA65_RS00130	0.77	+0.9
31,436	-	DZA65_RS00130	0.77	+0.2
31,436	-	DZA65_RS00130	0.77	+0.1
31,436	-	DZA65_RS00130	0.77	+0.7
31,436	-	DZA65_RS00130	0.77	-0.8
31,447	+	DZA65_RS00130	0.79	+0.1
31,447	+	DZA65_RS00130	0.79	+0.7
31,447	+	DZA65_RS00130	0.79	-0.4
31,448	-	DZA65_RS00130	0.79	+0.1
31,448	-	DZA65_RS00130	0.79	-0.4
31,448	-	DZA65_RS00130	0.79	-0.6
31,489	+	DZA65_RS00130	0.83	-0.7
31,490	-	DZA65_RS00130	0.84	-1.1
31,519	+	DZA65_RS00130	0.87	-0.7
31,519	+	DZA65_RS00130	0.87	+1.0
31,520	-	DZA65_RS00130	0.87	-0.7
31,520	-	DZA65_RS00130	0.87	-0.6
31,528	+	DZA65_RS00130	0.88	+0.7
31,528	+	DZA65_RS00130	0.88	+1.1
31,529	-	DZA65_RS00130	0.88	+0.1
31,529	-	DZA65_RS00130	0.88	-0.8
31,571	+			-0.0
31,571	+			-0.7
31,603	+			-0.3
31,603	+			+0.9
31,612	+			-2.1
31,612	+			+0.1
31,612	+			+0.1
31,612	+			-1.6
31,636	-			-0.9
31,652	+			+0.1
31,652	+			-1.3
31,672	+			+1.0
31,672	+			+2.0
31,672	+			-0.9
31,673	-			-0.3
31,673	-			+0.3
31,674	+			-0.3
31,674	+			+0.9
31,674	+			-0.3
31,674	+			+0.2
31,674	+			+0.1
31,674	+			-0.6
31,674	+			-1.5
31,674	+			-0.7
31,674	+			-1.0
31,674	+			+0.3
31,674	+			-0.5
31,674	+			+0.2
31,674	+			+2.4
31,674	+			+1.3
31,674	+			+1.0
31,674	+			-0.7
31,674	+			-0.2
31,674	+			-1.1
31,674	+			+0.9
31,674	+			-0.1
31,675	-			-1.1
31,675	-			-0.2
31,675	-			-0.1
31,675	-			+2.7
31,675	-			+0.7
31,675	-			-0.2
31,675	-			-0.2
31,675	-			-1.1
31,675	-			-0.9
31,675	-			+0.7
31,675	-			-0.1
31,675	-			+0.7
31,675	-			+0.2
31,678	+			+1.3
31,678	+			+0.1
31,678	+			-0.6
31,678	+			-1.3
31,678	+			+0.5
31,678	+			+0.5
31,678	+			-0.8
31,678	+			-0.7
31,679	-			+1.7
31,679	-			-2.2
31,679	-			+0.7
31,679	-			+0.4
31,722	-			+2.0
31,833	+			+0.1
31,833	+			+0.2
31,833	+			-0.1
31,834	-			+0.7
31,861	+			+0.0
31,861	+			-0.2
31,861	+			+0.2
31,861	+			+0.7
31,861	+			-0.2
31,861	+			-0.7
31,861	+			-0.1
31,862	-			-0.2
31,862	-			+0.3
31,862	-			+0.7
31,862	-			-1.0
31,862	-			+0.4
31,862	-			-1.5
31,862	-			+0.4
31,889	-			-1.1
31,967	+			+1.1
31,967	+			+0.5
31,968	-			+0.7
31,968	-			-0.4
31,968	-			+1.7
31,968	-			-1.2
31,984	+			+0.2
31,984	+			+0.1
31,984	+			+0.1
31,984	+			+0.3
31,984	+			-0.2
31,985	-			-0.1
31,985	-			-0.2
31,985	-			+0.9
31,985	-			-0.7
31,985	-			-0.1
31,985	-			-0.9
31,985	-			-1.6
31,985	-			-1.6
31,996	+			+0.4
31,996	+			+0.1
31,996	+			-0.5
31,997	-			+0.3
31,997	-			-1.1
31,997	-			+0.2
32,042	+			+1.7
32,042	+			+1.1
32,042	+			-0.3
32,042	+			-0.1
32,043	-			+0.1
32,043	-			-0.0
32,043	-			-0.5
32,043	-			+0.3
32,043	-			-0.3
32,103	-			-1.1
32,153	+	DZA65_RS00135	0.17	+0.7
32,237	+	DZA65_RS00135	0.35	-1.1
32,237	+	DZA65_RS00135	0.35	-0.5
32,237	+	DZA65_RS00135	0.35	-0.3
32,237	+	DZA65_RS00135	0.35	-0.1
32,237	+	DZA65_RS00135	0.35	-0.5
32,237	+	DZA65_RS00135	0.35	+0.1
32,237	+	DZA65_RS00135	0.35	-0.8
32,238	-	DZA65_RS00135	0.35	+0.7
32,238	-	DZA65_RS00135	0.35	+0.1
32,238	-	DZA65_RS00135	0.35	+0.3
32,238	-	DZA65_RS00135	0.35	-0.9
32,238	-	DZA65_RS00135	0.35	+0.1
32,238	-	DZA65_RS00135	0.35	-1.0
32,238	-	DZA65_RS00135	0.35	-1.3
32,238	-	DZA65_RS00135	0.35	+0.2
32,238	-	DZA65_RS00135	0.35	+1.3
32,238	-	DZA65_RS00135	0.35	-0.3
32,238	-	DZA65_RS00135	0.35	+0.1
32,238	-	DZA65_RS00135	0.35	-0.6
32,238	-	DZA65_RS00135	0.35	-0.8
32,238	-	DZA65_RS00135	0.35	+0.3
32,310	+	DZA65_RS00135	0.50	-1.0
32,310	+	DZA65_RS00135	0.50	-0.9
32,310	+	DZA65_RS00135	0.50	-1.5
32,310	+	DZA65_RS00135	0.50	+1.2
32,310	+	DZA65_RS00135	0.50	+0.3
32,310	+	DZA65_RS00135	0.50	+0.2
32,310	+	DZA65_RS00135	0.50	-2.1
32,310	+	DZA65_RS00135	0.50	+0.2
32,311	-	DZA65_RS00135	0.50	-2.3
32,311	-	DZA65_RS00135	0.50	+0.4
32,311	-			-0.3
32,311	-	DZA65_RS00135	0.50	-2.1
32,311	-	DZA65_RS00135	0.50	-0.4
32,317	-	DZA65_RS00135	0.52	-0.1
32,317	-	DZA65_RS00135	0.52	-0.2
32,317	-	DZA65_RS00135	0.52	-0.4
32,317	-	DZA65_RS00135	0.52	+0.1
32,370	+	DZA65_RS00135	0.63	-1.5
32,371	-	DZA65_RS00135	0.63	-0.2
32,419	+	DZA65_RS00135	0.74	-0.9
32,435	+	DZA65_RS00135	0.77	+0.3
32,474	+	DZA65_RS00135	0.85	+0.2
32,475	-	DZA65_RS00135	0.85	-0.2
32,504	+			-0.7
32,504	+			-0.9
32,504	+			-0.3
32,505	-			-0.8
32,505	-			-0.9
32,563	-			-0.1
32,572	+			+0.9
32,572	+			-1.1
32,593	-			-0.7

Or see this region's nucleotide sequence