Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21635

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS21625 and DZA65_RS21630 are separated by 39 nucleotidesDZA65_RS21630 and DZA65_RS21635 are separated by 190 nucleotidesDZA65_RS21635 and DZA65_RS21640 are separated by 50 nucleotides DZA65_RS21625: DZA65_RS21625 - DUF3142 domain-containing protein, at 4,676,400 to 4,677,173 _RS21625 DZA65_RS21630: DZA65_RS21630 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 4,677,213 to 4,677,677 _RS21630 DZA65_RS21635: DZA65_RS21635 - DUF2756 domain-containing protein, at 4,677,868 to 4,678,128 _RS21635 DZA65_RS21640: DZA65_RS21640 - AEC family transporter, at 4,678,179 to 4,679,135 _RS21640 Position (kb) 4677 4678 4679Strain fitness (log2 ratio) -2 -1 0 1 2at 4676.950 kb on + strand, within DZA65_RS21625at 4676.950 kb on + strand, within DZA65_RS21625at 4676.961 kb on + strand, within DZA65_RS21625at 4676.962 kb on - strand, within DZA65_RS21625at 4676.997 kb on + strand, within DZA65_RS21625at 4676.998 kb on - strand, within DZA65_RS21625at 4677.046 kb on + strand, within DZA65_RS21625at 4677.046 kb on + strand, within DZA65_RS21625at 4677.046 kb on + strand, within DZA65_RS21625at 4677.046 kb on + strand, within DZA65_RS21625at 4677.046 kb on + strand, within DZA65_RS21625at 4677.046 kb on + strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.047 kb on - strand, within DZA65_RS21625at 4677.102 kb on + strandat 4677.253 kb on + strandat 4677.253 kb on + strandat 4677.254 kb on - strandat 4677.254 kb on - strandat 4677.299 kb on + strand, within DZA65_RS21630at 4677.299 kb on + strand, within DZA65_RS21630at 4677.299 kb on + strand, within DZA65_RS21630at 4677.300 kb on - strand, within DZA65_RS21630at 4677.300 kb on - strand, within DZA65_RS21630at 4677.300 kb on - strand, within DZA65_RS21630at 4677.407 kb on - strand, within DZA65_RS21630at 4677.490 kb on + strand, within DZA65_RS21630at 4677.490 kb on + strand, within DZA65_RS21630at 4677.491 kb on - strand, within DZA65_RS21630at 4677.491 kb on - strand, within DZA65_RS21630at 4677.491 kb on - strand, within DZA65_RS21630at 4677.491 kb on - strand, within DZA65_RS21630at 4677.491 kb on - strand, within DZA65_RS21630at 4677.526 kb on + strand, within DZA65_RS21630at 4677.623 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.626 kb on + strand, within DZA65_RS21630at 4677.627 kb on - strand, within DZA65_RS21630at 4677.627 kb on - strand, within DZA65_RS21630at 4677.627 kb on - strand, within DZA65_RS21630at 4677.658 kb on + strandat 4677.659 kb on - strandat 4677.659 kb on - strandat 4677.668 kb on + strandat 4677.668 kb on + strandat 4677.680 kb on + strandat 4677.680 kb on + strandat 4677.681 kb on - strandat 4677.681 kb on - strandat 4677.681 kb on - strandat 4677.681 kb on - strandat 4677.681 kb on - strandat 4677.691 kb on - strandat 4677.712 kb on - strandat 4677.712 kb on - strandat 4677.712 kb on - strandat 4677.713 kb on + strandat 4677.750 kb on - strandat 4677.798 kb on + strandat 4677.810 kb on + strandat 4677.810 kb on + strandat 4677.811 kb on - strandat 4677.811 kb on - strandat 4677.811 kb on - strandat 4677.854 kb on + strandat 4677.855 kb on - strandat 4677.857 kb on + strandat 4677.857 kb on + strandat 4677.858 kb on - strandat 4677.858 kb on - strandat 4677.858 kb on - strandat 4677.918 kb on - strand, within DZA65_RS21635at 4677.951 kb on + strand, within DZA65_RS21635at 4677.951 kb on + strand, within DZA65_RS21635at 4677.951 kb on + strand, within DZA65_RS21635at 4677.951 kb on + strand, within DZA65_RS21635at 4677.951 kb on + strand, within DZA65_RS21635at 4677.951 kb on + strand, within DZA65_RS21635at 4677.952 kb on - strand, within DZA65_RS21635at 4677.955 kb on - strand, within DZA65_RS21635at 4677.978 kb on + strand, within DZA65_RS21635at 4677.978 kb on + strand, within DZA65_RS21635at 4677.978 kb on + strand, within DZA65_RS21635at 4677.978 kb on + strand, within DZA65_RS21635at 4677.979 kb on - strand, within DZA65_RS21635at 4678.018 kb on - strand, within DZA65_RS21635at 4678.051 kb on + strand, within DZA65_RS21635at 4678.051 kb on + strand, within DZA65_RS21635at 4678.052 kb on - strand, within DZA65_RS21635at 4678.052 kb on - strand, within DZA65_RS21635at 4678.113 kb on + strandat 4678.114 kb on - strandat 4678.180 kb on + strandat 4678.181 kb on - strandat 4678.181 kb on - strandat 4678.221 kb on - strandat 4678.280 kb on + strand, within DZA65_RS21640at 4678.280 kb on + strand, within DZA65_RS21640at 4678.281 kb on - strand, within DZA65_RS21640at 4678.281 kb on - strand, within DZA65_RS21640at 4678.281 kb on - strand, within DZA65_RS21640at 4678.300 kb on + strand, within DZA65_RS21640at 4678.300 kb on + strand, within DZA65_RS21640at 4678.300 kb on + strand, within DZA65_RS21640at 4678.300 kb on + strand, within DZA65_RS21640at 4678.300 kb on + strand, within DZA65_RS21640at 4678.301 kb on - strand, within DZA65_RS21640at 4678.301 kb on - strand, within DZA65_RS21640at 4678.301 kb on - strand, within DZA65_RS21640at 4678.304 kb on + strand, within DZA65_RS21640at 4678.304 kb on + strand, within DZA65_RS21640at 4678.304 kb on + strand, within DZA65_RS21640at 4678.304 kb on + strand, within DZA65_RS21640at 4678.304 kb on + strand, within DZA65_RS21640at 4678.305 kb on - strand, within DZA65_RS21640at 4678.305 kb on - strand, within DZA65_RS21640at 4678.305 kb on - strand, within DZA65_RS21640at 4678.404 kb on + strand, within DZA65_RS21640at 4678.427 kb on + strand, within DZA65_RS21640at 4678.427 kb on + strand, within DZA65_RS21640at 4678.428 kb on - strand, within DZA65_RS21640at 4678.428 kb on - strand, within DZA65_RS21640at 4678.428 kb on - strand, within DZA65_RS21640at 4678.428 kb on - strand, within DZA65_RS21640at 4678.463 kb on - strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.509 kb on + strand, within DZA65_RS21640at 4678.510 kb on - strand, within DZA65_RS21640at 4678.510 kb on - strand, within DZA65_RS21640at 4678.510 kb on - strand, within DZA65_RS21640at 4678.510 kb on - strand, within DZA65_RS21640at 4678.510 kb on - strand, within DZA65_RS21640at 4678.510 kb on - strand, within DZA65_RS21640at 4678.524 kb on - strand, within DZA65_RS21640at 4678.535 kb on + strand, within DZA65_RS21640at 4678.535 kb on + strand, within DZA65_RS21640at 4678.535 kb on + strand, within DZA65_RS21640at 4678.536 kb on - strand, within DZA65_RS21640at 4678.536 kb on - strand, within DZA65_RS21640at 4678.536 kb on - strand, within DZA65_RS21640at 4678.536 kb on - strand, within DZA65_RS21640at 4678.536 kb on - strand, within DZA65_RS21640at 4678.573 kb on + strand, within DZA65_RS21640at 4678.573 kb on + strand, within DZA65_RS21640at 4678.808 kb on + strand, within DZA65_RS21640at 4678.809 kb on - strand, within DZA65_RS21640at 4678.809 kb on - strand, within DZA65_RS21640at 4678.854 kb on + strand, within DZA65_RS21640at 4679.060 kb on - strandat 4679.060 kb on - strandat 4679.123 kb on + strandat 4679.124 kb on - strandat 4679.124 kb on - strandat 4679.124 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,676,950 + DZA65_RS21625 0.71 +1.4
4,676,950 + DZA65_RS21625 0.71 -1.5
4,676,961 + DZA65_RS21625 0.72 +0.3
4,676,962 - DZA65_RS21625 0.73 -1.4
4,676,997 + DZA65_RS21625 0.77 +0.2
4,676,998 - DZA65_RS21625 0.77 -0.2
4,677,046 + DZA65_RS21625 0.83 -0.2
4,677,046 + DZA65_RS21625 0.83 +0.1
4,677,046 + DZA65_RS21625 0.83 -0.7
4,677,046 + DZA65_RS21625 0.83 +1.1
4,677,046 + DZA65_RS21625 0.83 -0.2
4,677,046 + DZA65_RS21625 0.83 -0.8
4,677,047 - DZA65_RS21625 0.84 +1.2
4,677,047 - DZA65_RS21625 0.84 -1.0
4,677,047 - DZA65_RS21625 0.84 +0.3
4,677,047 - DZA65_RS21625 0.84 +0.3
4,677,047 - DZA65_RS21625 0.84 -1.0
4,677,047 - DZA65_RS21625 0.84 -0.7
4,677,047 - DZA65_RS21625 0.84 +2.0
4,677,047 - DZA65_RS21625 0.84 +0.1
4,677,047 - DZA65_RS21625 0.84 -0.2
4,677,102 + -0.2
4,677,253 + -0.4
4,677,253 + -0.9
4,677,254 - +0.1
4,677,254 - -0.5
4,677,299 + DZA65_RS21630 0.18 +0.5
4,677,299 + DZA65_RS21630 0.18 -1.9
4,677,299 + DZA65_RS21630 0.18 -0.3
4,677,300 - DZA65_RS21630 0.19 -0.7
4,677,300 - DZA65_RS21630 0.19 -0.3
4,677,300 - DZA65_RS21630 0.19 -0.5
4,677,407 - DZA65_RS21630 0.42 +0.1
4,677,490 + DZA65_RS21630 0.60 +1.4
4,677,490 + DZA65_RS21630 0.60 -1.4
4,677,491 - DZA65_RS21630 0.60 -0.1
4,677,491 - DZA65_RS21630 0.60 +0.4
4,677,491 - DZA65_RS21630 0.60 +0.0
4,677,491 - DZA65_RS21630 0.60 -0.8
4,677,491 - DZA65_RS21630 0.60 +0.7
4,677,526 + DZA65_RS21630 0.67 -0.7
4,677,623 + DZA65_RS21630 0.88 -0.7
4,677,626 + DZA65_RS21630 0.89 -0.5
4,677,626 + DZA65_RS21630 0.89 +1.7
4,677,626 + DZA65_RS21630 0.89 -1.0
4,677,626 + DZA65_RS21630 0.89 -0.1
4,677,626 + DZA65_RS21630 0.89 -0.2
4,677,626 + DZA65_RS21630 0.89 -0.6
4,677,626 + DZA65_RS21630 0.89 +0.1
4,677,626 + DZA65_RS21630 0.89 -0.0
4,677,626 + DZA65_RS21630 0.89 +0.0
4,677,627 - DZA65_RS21630 0.89 -0.9
4,677,627 - DZA65_RS21630 0.89 -0.4
4,677,627 - DZA65_RS21630 0.89 -0.2
4,677,658 + +0.1
4,677,659 - -0.0
4,677,659 - -0.1
4,677,668 + +0.8
4,677,668 + -0.2
4,677,680 + -0.9
4,677,680 + +1.1
4,677,681 - -0.2
4,677,681 - +0.1
4,677,681 - -0.5
4,677,681 - -0.6
4,677,681 - -0.6
4,677,691 - -0.3
4,677,712 - -0.1
4,677,712 - +1.1
4,677,712 - +0.4
4,677,713 + -0.9
4,677,750 - +2.1
4,677,798 + +0.4
4,677,810 + +0.0
4,677,810 + +0.3
4,677,811 - +0.1
4,677,811 - +0.4
4,677,811 - -1.2
4,677,854 + +1.1
4,677,855 - +2.1
4,677,857 + +1.4
4,677,857 + +0.3
4,677,858 - +0.2
4,677,858 - +0.0
4,677,858 - +0.3
4,677,918 - DZA65_RS21635 0.19 -0.2
4,677,951 + DZA65_RS21635 0.32 -1.2
4,677,951 + DZA65_RS21635 0.32 +1.0
4,677,951 + DZA65_RS21635 0.32 +0.1
4,677,951 + DZA65_RS21635 0.32 -1.0
4,677,951 + DZA65_RS21635 0.32 +0.5
4,677,951 + DZA65_RS21635 0.32 +0.9
4,677,952 - DZA65_RS21635 0.32 -0.3
4,677,955 - DZA65_RS21635 0.33 +0.2
4,677,978 + DZA65_RS21635 0.42 +1.7
4,677,978 + DZA65_RS21635 0.42 +0.1
4,677,978 + DZA65_RS21635 0.42 -0.5
4,677,978 + DZA65_RS21635 0.42 +1.8
4,677,979 - DZA65_RS21635 0.43 +0.0
4,678,018 - DZA65_RS21635 0.57 -0.2
4,678,051 + DZA65_RS21635 0.70 +1.0
4,678,051 + DZA65_RS21635 0.70 +0.7
4,678,052 - DZA65_RS21635 0.70 +1.4
4,678,052 - DZA65_RS21635 0.70 -0.7
4,678,113 + -0.2
4,678,114 - -0.1
4,678,180 + -0.7
4,678,181 - +0.7
4,678,181 - +0.4
4,678,221 - +0.4
4,678,280 + DZA65_RS21640 0.11 -1.2
4,678,280 + DZA65_RS21640 0.11 -0.1
4,678,281 - DZA65_RS21640 0.11 -0.6
4,678,281 - DZA65_RS21640 0.11 +0.1
4,678,281 - DZA65_RS21640 0.11 -0.2
4,678,300 + DZA65_RS21640 0.13 -0.8
4,678,300 + DZA65_RS21640 0.13 -1.9
4,678,300 + DZA65_RS21640 0.13 -0.0
4,678,300 + DZA65_RS21640 0.13 +0.5
4,678,300 + DZA65_RS21640 0.13 -0.7
4,678,301 - DZA65_RS21640 0.13 +0.0
4,678,301 - DZA65_RS21640 0.13 +0.6
4,678,301 - DZA65_RS21640 0.13 -0.2
4,678,304 + DZA65_RS21640 0.13 -0.6
4,678,304 + DZA65_RS21640 0.13 -1.9
4,678,304 + DZA65_RS21640 0.13 +0.1
4,678,304 + DZA65_RS21640 0.13 +1.4
4,678,304 + DZA65_RS21640 0.13 +0.6
4,678,305 - DZA65_RS21640 0.13 -0.5
4,678,305 - DZA65_RS21640 0.13 -0.2
4,678,305 - DZA65_RS21640 0.13 -0.2
4,678,404 + DZA65_RS21640 0.24 +0.3
4,678,427 + DZA65_RS21640 0.26 -0.2
4,678,427 + DZA65_RS21640 0.26 +1.4
4,678,428 - DZA65_RS21640 0.26 -1.2
4,678,428 - DZA65_RS21640 0.26 +0.2
4,678,428 - DZA65_RS21640 0.26 -0.4
4,678,428 - DZA65_RS21640 0.26 +0.1
4,678,463 - DZA65_RS21640 0.30 -1.6
4,678,509 + DZA65_RS21640 0.34 -0.4
4,678,509 + DZA65_RS21640 0.34 +0.3
4,678,509 + DZA65_RS21640 0.34 -1.4
4,678,509 + DZA65_RS21640 0.34 -1.3
4,678,509 + DZA65_RS21640 0.34 +0.2
4,678,509 + DZA65_RS21640 0.34 -0.4
4,678,509 + DZA65_RS21640 0.34 +2.1
4,678,509 + DZA65_RS21640 0.34 -0.0
4,678,509 + DZA65_RS21640 0.34 +0.8
4,678,509 + DZA65_RS21640 0.34 +0.6
4,678,510 - DZA65_RS21640 0.35 +0.3
4,678,510 - DZA65_RS21640 0.35 -0.1
4,678,510 - DZA65_RS21640 0.35 -0.3
4,678,510 - DZA65_RS21640 0.35 -0.3
4,678,510 - DZA65_RS21640 0.35 +0.3
4,678,510 - DZA65_RS21640 0.35 -0.5
4,678,524 - DZA65_RS21640 0.36 -0.2
4,678,535 + DZA65_RS21640 0.37 +0.3
4,678,535 + DZA65_RS21640 0.37 +0.7
4,678,535 + DZA65_RS21640 0.37 -2.5
4,678,536 - DZA65_RS21640 0.37 -1.6
4,678,536 - DZA65_RS21640 0.37 -2.3
4,678,536 - DZA65_RS21640 0.37 +0.6
4,678,536 - DZA65_RS21640 0.37 -0.1
4,678,536 - DZA65_RS21640 0.37 +0.3
4,678,573 + DZA65_RS21640 0.41 -0.9
4,678,573 + DZA65_RS21640 0.41 +2.0
4,678,808 + DZA65_RS21640 0.66 +0.0
4,678,809 - DZA65_RS21640 0.66 -0.5
4,678,809 - DZA65_RS21640 0.66 -0.9
4,678,854 + DZA65_RS21640 0.71 -1.2
4,679,060 - -1.0
4,679,060 - +1.1
4,679,123 + +1.5
4,679,124 - -0.2
4,679,124 - -0.3
4,679,124 - -0.5

Or see this region's nucleotide sequence