Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS21535 and DZA65_RS21540 are separated by 109 nucleotides DZA65_RS21540 and DZA65_RS21545 are separated by 13 nucleotides DZA65_RS21545 and DZA65_RS21550 are separated by 148 nucleotides DZA65_RS21550 and DZA65_RS21555 are separated by 141 nucleotides
DZA65_RS21535: DZA65_RS21535 - class II fructose-bisphosphatase, at 4,658,403 to 4,659,413
_RS21535
DZA65_RS21540: DZA65_RS21540 - ferredoxin--NADP(+) reductase, at 4,659,523 to 4,660,269
_RS21540
DZA65_RS21545: DZA65_RS21545 - DUF805 domain-containing protein, at 4,660,283 to 4,660,708
_RS21545
DZA65_RS21550: DZA65_RS21550 - YiiQ family protein, at 4,660,857 to 4,661,450
_RS21550
DZA65_RS21555: DZA65_RS21555 - triose-phosphate isomerase, at 4,661,592 to 4,662,362
_RS21555
Position (kb) 4660
4661 Strain fitness (log2 ratio) -2
-1
0
1 at 4659.362 kb on + strand at 4659.362 kb on + strand at 4659.363 kb on - strand at 4659.363 kb on - strand at 4659.412 kb on - strand at 4659.446 kb on + strand at 4659.447 kb on - strand at 4659.464 kb on - strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.516 kb on + strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.517 kb on - strand at 4659.578 kb on + strand at 4659.578 kb on + strand at 4659.579 kb on - strand at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.676 kb on + strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.677 kb on - strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.682 kb on + strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.683 kb on - strand, within DZA65_RS21540 at 4659.719 kb on - strand, within DZA65_RS21540 at 4659.883 kb on + strand, within DZA65_RS21540 at 4659.941 kb on + strand, within DZA65_RS21540 at 4659.942 kb on - strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.006 kb on + strand, within DZA65_RS21540 at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.245 kb on + strand at 4660.246 kb on - strand at 4660.246 kb on - strand at 4660.261 kb on + strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.262 kb on - strand at 4660.267 kb on + strand at 4660.268 kb on - strand at 4660.277 kb on + strand at 4660.331 kb on + strand, within DZA65_RS21545 at 4660.332 kb on - strand, within DZA65_RS21545 at 4660.343 kb on - strand, within DZA65_RS21545 at 4660.382 kb on - strand, within DZA65_RS21545 at 4660.646 kb on + strand, within DZA65_RS21545 at 4660.700 kb on + strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.701 kb on - strand at 4660.734 kb on + strand at 4660.734 kb on + strand at 4660.735 kb on - strand at 4660.748 kb on + strand at 4660.748 kb on + strand at 4660.749 kb on - strand at 4660.749 kb on - strand at 4660.749 kb on - strand at 4660.753 kb on + strand at 4660.753 kb on + strand at 4660.753 kb on + strand at 4660.753 kb on + strand at 4660.754 kb on - strand at 4660.754 kb on - strand at 4660.754 kb on - strand at 4660.754 kb on - strand at 4660.809 kb on + strand at 4660.810 kb on - strand at 4660.810 kb on - strand at 4660.831 kb on + strand at 4660.831 kb on + strand at 4660.832 kb on - strand at 4660.832 kb on - strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.841 kb on + strand at 4660.842 kb on - strand at 4660.844 kb on + strand at 4660.845 kb on - strand at 4660.845 kb on - strand at 4660.845 kb on - strand at 4660.845 kb on - strand at 4660.847 kb on + strand at 4660.848 kb on - strand at 4660.848 kb on - strand at 4660.900 kb on + strand at 4660.900 kb on + strand at 4660.900 kb on + strand at 4660.965 kb on + strand, within DZA65_RS21550 at 4660.965 kb on + strand, within DZA65_RS21550 at 4660.965 kb on + strand, within DZA65_RS21550 at 4661.022 kb on + strand, within DZA65_RS21550 at 4661.022 kb on + strand, within DZA65_RS21550 at 4661.023 kb on - strand, within DZA65_RS21550 at 4661.023 kb on - strand, within DZA65_RS21550 at 4661.023 kb on - strand, within DZA65_RS21550 at 4661.024 kb on + strand, within DZA65_RS21550 at 4661.025 kb on - strand, within DZA65_RS21550 at 4661.058 kb on + strand, within DZA65_RS21550 at 4661.130 kb on + strand, within DZA65_RS21550 at 4661.130 kb on + strand, within DZA65_RS21550 at 4661.131 kb on - strand, within DZA65_RS21550 at 4661.131 kb on - strand, within DZA65_RS21550 at 4661.131 kb on - strand, within DZA65_RS21550 at 4661.183 kb on + strand, within DZA65_RS21550 at 4661.184 kb on - strand, within DZA65_RS21550 at 4661.244 kb on + strand, within DZA65_RS21550 at 4661.264 kb on + strand, within DZA65_RS21550 at 4661.265 kb on - strand, within DZA65_RS21550 at 4661.270 kb on + strand, within DZA65_RS21550 at 4661.270 kb on + strand, within DZA65_RS21550 at 4661.271 kb on - strand, within DZA65_RS21550 at 4661.271 kb on - strand, within DZA65_RS21550 at 4661.374 kb on - strand, within DZA65_RS21550 at 4661.465 kb on - strand at 4661.465 kb on - strand at 4661.502 kb on + strand at 4661.502 kb on + strand at 4661.502 kb on + strand at 4661.502 kb on + strand at 4661.502 kb on + strand at 4661.503 kb on - strand at 4661.503 kb on - strand at 4661.503 kb on - strand at 4661.503 kb on - strand at 4661.503 kb on - strand at 4661.504 kb on + strand at 4661.504 kb on + strand at 4661.504 kb on + strand at 4661.504 kb on + strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.505 kb on - strand at 4661.507 kb on + strand at 4661.507 kb on + strand at 4661.508 kb on - strand at 4661.508 kb on - strand at 4661.508 kb on - strand at 4661.508 kb on - strand at 4661.508 kb on - strand at 4661.508 kb on - strand at 4661.556 kb on + strand at 4661.556 kb on + strand at 4661.556 kb on + strand at 4661.556 kb on + strand at 4661.557 kb on - strand at 4661.557 kb on - strand at 4661.563 kb on + strand at 4661.563 kb on + strand at 4661.563 kb on + strand at 4661.563 kb on + strand at 4661.564 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,659,362 + -0.9 4,659,362 + -0.3 4,659,363 - +0.4 4,659,363 - -0.8 4,659,412 - -0.3 4,659,446 + -0.2 4,659,447 - +1.0 4,659,464 - +0.7 4,659,516 + -2.3 4,659,516 + +1.4 4,659,516 + -0.4 4,659,516 + +1.0 4,659,516 + +0.9 4,659,516 + -1.0 4,659,517 - +0.4 4,659,517 - -2.1 4,659,517 - +0.4 4,659,517 - -1.0 4,659,517 - +0.8 4,659,517 - -1.0 4,659,578 + -0.2 4,659,578 + -0.4 4,659,579 - -0.6 4,659,676 + DZA65_RS21540 0.20 -2.0 4,659,676 + DZA65_RS21540 0.20 -0.0 4,659,677 - DZA65_RS21540 0.21 -0.6 4,659,677 - DZA65_RS21540 0.21 -0.1 4,659,677 - DZA65_RS21540 0.21 +1.1 4,659,682 + DZA65_RS21540 0.21 -0.6 4,659,682 + DZA65_RS21540 0.21 -0.0 4,659,682 + DZA65_RS21540 0.21 -1.0 4,659,682 + DZA65_RS21540 0.21 -1.2 4,659,683 - DZA65_RS21540 0.21 +0.4 4,659,683 - -0.2 4,659,683 - DZA65_RS21540 0.21 +0.6 4,659,683 - DZA65_RS21540 0.21 -1.9 4,659,683 - DZA65_RS21540 0.21 -0.2 4,659,683 - DZA65_RS21540 0.21 +0.2 4,659,683 - DZA65_RS21540 0.21 -1.1 4,659,719 - DZA65_RS21540 0.26 -0.2 4,659,883 + DZA65_RS21540 0.48 +1.0 4,659,941 + DZA65_RS21540 0.56 +0.1 4,659,942 - DZA65_RS21540 0.56 -1.4 4,660,006 + DZA65_RS21540 0.65 -0.9 4,660,006 + DZA65_RS21540 0.65 +1.2 4,660,006 + DZA65_RS21540 0.65 -0.0 4,660,245 + -0.6 4,660,245 + +0.4 4,660,245 + -0.9 4,660,246 - -0.4 4,660,246 - +0.4 4,660,261 + -0.5 4,660,262 - -0.6 4,660,262 - -0.2 4,660,262 - -0.1 4,660,262 - -0.6 4,660,267 + -1.1 4,660,268 - +1.6 4,660,277 + -1.1 4,660,331 + DZA65_RS21545 0.11 +0.8 4,660,332 - DZA65_RS21545 0.12 +1.2 4,660,343 - DZA65_RS21545 0.14 -0.0 4,660,382 - DZA65_RS21545 0.23 -1.4 4,660,646 + DZA65_RS21545 0.85 +0.6 4,660,700 + -0.0 4,660,701 - +0.6 4,660,701 - +0.4 4,660,701 - -2.2 4,660,701 - +0.4 4,660,701 - +1.2 4,660,701 - -0.9 4,660,701 - +0.2 4,660,734 + +0.4 4,660,734 + +0.4 4,660,735 - +1.7 4,660,748 + -0.4 4,660,748 + +0.2 4,660,749 - -0.3 4,660,749 - +0.1 4,660,749 - -0.0 4,660,753 + -0.8 4,660,753 + +0.3 4,660,753 + -1.0 4,660,753 + +0.0 4,660,754 - -0.8 4,660,754 - +0.4 4,660,754 - -0.4 4,660,754 - +0.3 4,660,809 + -0.3 4,660,810 - +1.4 4,660,810 - +0.8 4,660,831 + -0.7 4,660,831 + -0.9 4,660,832 - -0.6 4,660,832 - +1.2 4,660,841 + +0.2 4,660,841 + -0.6 4,660,841 + -1.4 4,660,841 + +0.1 4,660,841 + +1.0 4,660,842 - +0.3 4,660,844 + +0.6 4,660,845 - +0.6 4,660,845 - -0.9 4,660,845 - -0.2 4,660,845 - +0.3 4,660,847 + -1.2 4,660,848 - -0.4 4,660,848 - +0.1 4,660,900 + -1.8 4,660,900 + +0.3 4,660,900 + -1.3 4,660,965 + DZA65_RS21550 0.18 +0.7 4,660,965 + DZA65_RS21550 0.18 -0.7 4,660,965 + DZA65_RS21550 0.18 -1.8 4,661,022 + DZA65_RS21550 0.28 -0.9 4,661,022 + DZA65_RS21550 0.28 -0.6 4,661,023 - DZA65_RS21550 0.28 -0.5 4,661,023 - DZA65_RS21550 0.28 -0.6 4,661,023 - DZA65_RS21550 0.28 +0.3 4,661,024 + DZA65_RS21550 0.28 -1.6 4,661,025 - DZA65_RS21550 0.28 +0.6 4,661,058 + DZA65_RS21550 0.34 +0.2 4,661,130 + DZA65_RS21550 0.46 +0.9 4,661,130 + DZA65_RS21550 0.46 -2.0 4,661,131 - DZA65_RS21550 0.46 -0.3 4,661,131 - DZA65_RS21550 0.46 -0.8 4,661,131 - DZA65_RS21550 0.46 +0.4 4,661,183 + DZA65_RS21550 0.55 -0.4 4,661,184 - DZA65_RS21550 0.55 +1.1 4,661,244 + DZA65_RS21550 0.65 -0.5 4,661,264 + DZA65_RS21550 0.69 +0.4 4,661,265 - DZA65_RS21550 0.69 +0.0 4,661,270 + DZA65_RS21550 0.70 -1.2 4,661,270 + DZA65_RS21550 0.70 -0.8 4,661,271 - DZA65_RS21550 0.70 -0.1 4,661,271 - DZA65_RS21550 0.70 +0.0 4,661,374 - DZA65_RS21550 0.87 -0.2 4,661,465 - -0.2 4,661,465 - +0.0 4,661,502 + -0.7 4,661,502 + -1.3 4,661,502 + -0.7 4,661,502 + +0.7 4,661,502 + +0.0 4,661,503 - +1.2 4,661,503 - -0.2 4,661,503 - +1.0 4,661,503 - +1.3 4,661,503 - -0.1 4,661,504 + -0.2 4,661,504 + -0.6 4,661,504 + +0.6 4,661,504 + -0.3 4,661,505 - -0.7 4,661,505 - -0.8 4,661,505 - -0.6 4,661,505 - +0.1 4,661,505 - -0.5 4,661,505 - +0.8 4,661,505 - -0.6 4,661,507 + +0.2 4,661,507 + +0.4 4,661,508 - +0.1 4,661,508 - +0.7 4,661,508 - +0.8 4,661,508 - -1.1 4,661,508 - -0.9 4,661,508 - -1.9 4,661,556 + -0.9 4,661,556 + +0.2 4,661,556 + -0.7 4,661,556 + +0.7 4,661,557 - -0.5 4,661,557 - +0.7 4,661,563 + +0.7 4,661,563 + -0.8 4,661,563 + +0.7 4,661,563 + -0.5 4,661,564 - -0.7
Or see this region's nucleotide sequence