Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS17240 and DZA65_RS17245 are separated by 52 nucleotides DZA65_RS17245 and DZA65_RS17250 are separated by 118 nucleotides DZA65_RS17250 and DZA65_RS17255 overlap by 47 nucleotides DZA65_RS17255 and DZA65_RS17260 are separated by 35 nucleotides DZA65_RS17260 and DZA65_RS17265 are separated by 46 nucleotides
DZA65_RS17240: DZA65_RS17240 - class 1b ribonucleoside-diphosphate reductase subunit beta, at 3,719,926 to 3,720,888
_RS17240
DZA65_RS17245: DZA65_RS17245 - tRNA-Asp, at 3,720,941 to 3,721,017
_RS17245
DZA65_RS17250: DZA65_RS17250 - DNA polymerase III subunit epsilon, at 3,721,136 to 3,721,870
_RS17250
DZA65_RS17255: DZA65_RS17255 - ribonuclease HI, at 3,721,824 to 3,722,390
_RS17255
DZA65_RS17260: DZA65_RS17260 - class I SAM-dependent methyltransferase, at 3,722,426 to 3,723,148
_RS17260
DZA65_RS17265: DZA65_RS17265 - hydroxyacylglutathione hydrolase, at 3,723,195 to 3,723,950
_RS17265
Position (kb) 3721
3722
3723 Strain fitness (log2 ratio) -2
-1
0
1 at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.838 kb on + strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.839 kb on - strand at 3720.996 kb on + strand, within DZA65_RS17245 at 3721.009 kb on + strand, within DZA65_RS17245 at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.032 kb on + strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.033 kb on - strand at 3721.067 kb on + strand at 3721.068 kb on - strand at 3721.091 kb on + strand at 3721.856 kb on - strand at 3721.882 kb on - strand, within DZA65_RS17255 at 3721.895 kb on - strand, within DZA65_RS17255 at 3721.910 kb on + strand, within DZA65_RS17255 at 3721.918 kb on + strand, within DZA65_RS17255 at 3721.919 kb on - strand, within DZA65_RS17255 at 3722.401 kb on - strand at 3722.440 kb on - strand at 3722.445 kb on + strand at 3722.446 kb on - strand at 3722.489 kb on + strand at 3722.490 kb on - strand at 3722.561 kb on + strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.562 kb on - strand, within DZA65_RS17260 at 3722.575 kb on + strand, within DZA65_RS17260 at 3722.575 kb on + strand, within DZA65_RS17260 at 3722.575 kb on + strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.576 kb on - strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.629 kb on + strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.630 kb on - strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.634 kb on + strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.635 kb on - strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.638 kb on + strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.639 kb on - strand, within DZA65_RS17260 at 3722.646 kb on + strand, within DZA65_RS17260 at 3722.819 kb on + strand, within DZA65_RS17260 at 3722.819 kb on + strand, within DZA65_RS17260 at 3722.819 kb on + strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.820 kb on - strand, within DZA65_RS17260 at 3722.844 kb on + strand, within DZA65_RS17260 at 3722.844 kb on + strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.845 kb on - strand, within DZA65_RS17260 at 3722.876 kb on + strand, within DZA65_RS17260 at 3722.877 kb on - strand, within DZA65_RS17260 at 3723.006 kb on - strand, within DZA65_RS17260 at 3723.006 kb on - strand, within DZA65_RS17260 at 3723.029 kb on + strand, within DZA65_RS17260 at 3723.029 kb on + strand, within DZA65_RS17260 at 3723.067 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.075 kb on + strand, within DZA65_RS17260 at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.076 kb on - strand at 3723.078 kb on + strand at 3723.078 kb on + strand at 3723.078 kb on + strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.079 kb on - strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.106 kb on + strand at 3723.107 kb on - strand at 3723.107 kb on - strand at 3723.107 kb on - strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.153 kb on + strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.154 kb on - strand at 3723.156 kb on + strand at 3723.157 kb on - strand at 3723.157 kb on - strand at 3723.170 kb on + strand at 3723.170 kb on + strand at 3723.194 kb on + strand at 3723.195 kb on - strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.203 kb on + strand at 3723.204 kb on - strand at 3723.204 kb on - strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.231 kb on + strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.232 kb on - strand at 3723.338 kb on + strand, within DZA65_RS17265
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,720,838 + +0.6 3,720,838 + +0.1 3,720,838 + -0.1 3,720,838 + +0.3 3,720,838 + -0.5 3,720,838 + -0.8 3,720,838 + +0.2 3,720,838 + -0.8 3,720,839 - +0.1 3,720,839 - -0.0 3,720,839 - -0.9 3,720,839 - +0.3 3,720,839 - +1.1 3,720,996 + DZA65_RS17245 0.71 +0.9 3,721,009 + DZA65_RS17245 0.88 -0.7 3,721,032 + -1.7 3,721,032 + -0.6 3,721,032 + -0.3 3,721,032 + +1.3 3,721,032 + -0.6 3,721,032 + +0.9 3,721,032 + -0.2 3,721,033 - -1.8 3,721,033 - +0.6 3,721,033 - +0.5 3,721,033 - -0.4 3,721,033 - +0.3 3,721,067 + +0.0 3,721,068 - -0.4 3,721,091 + +0.3 3,721,856 - -1.3 3,721,882 - DZA65_RS17255 0.10 -0.8 3,721,895 - DZA65_RS17255 0.13 -0.6 3,721,910 + DZA65_RS17255 0.15 +0.1 3,721,918 + DZA65_RS17255 0.17 +0.4 3,721,919 - DZA65_RS17255 0.17 -1.9 3,722,401 - +0.5 3,722,440 - +0.8 3,722,445 + -2.3 3,722,446 - -1.5 3,722,489 + -0.1 3,722,490 - -0.6 3,722,561 + DZA65_RS17260 0.19 +0.3 3,722,562 - DZA65_RS17260 0.19 -1.1 3,722,562 - DZA65_RS17260 0.19 +1.2 3,722,562 - DZA65_RS17260 0.19 -0.4 3,722,562 - DZA65_RS17260 0.19 -1.1 3,722,575 + DZA65_RS17260 0.21 -1.2 3,722,575 + DZA65_RS17260 0.21 -1.3 3,722,575 + DZA65_RS17260 0.21 +0.9 3,722,576 - DZA65_RS17260 0.21 -0.6 3,722,576 - DZA65_RS17260 0.21 +0.0 3,722,576 - DZA65_RS17260 0.21 +0.1 3,722,576 - DZA65_RS17260 0.21 +0.5 3,722,576 - DZA65_RS17260 0.21 -1.0 3,722,629 + DZA65_RS17260 0.28 -0.4 3,722,629 + DZA65_RS17260 0.28 +0.1 3,722,629 + DZA65_RS17260 0.28 -2.5 3,722,629 + DZA65_RS17260 0.28 +0.1 3,722,629 + DZA65_RS17260 0.28 -0.7 3,722,629 + DZA65_RS17260 0.28 +0.7 3,722,630 - DZA65_RS17260 0.28 -0.5 3,722,630 - DZA65_RS17260 0.28 +0.9 3,722,630 - DZA65_RS17260 0.28 +0.8 3,722,630 - DZA65_RS17260 0.28 -0.4 3,722,634 + DZA65_RS17260 0.29 +1.1 3,722,634 + DZA65_RS17260 0.29 -0.8 3,722,634 + DZA65_RS17260 0.29 -0.5 3,722,634 + DZA65_RS17260 0.29 -0.5 3,722,634 + DZA65_RS17260 0.29 +0.1 3,722,634 + DZA65_RS17260 0.29 -0.5 3,722,634 + DZA65_RS17260 0.29 +0.4 3,722,634 + DZA65_RS17260 0.29 -0.1 3,722,634 + DZA65_RS17260 0.29 -0.5 3,722,635 - DZA65_RS17260 0.29 +0.0 3,722,635 - DZA65_RS17260 0.29 +0.1 3,722,635 - DZA65_RS17260 0.29 -0.1 3,722,635 - DZA65_RS17260 0.29 -0.6 3,722,635 - DZA65_RS17260 0.29 +0.3 3,722,635 - DZA65_RS17260 0.29 +0.4 3,722,635 - DZA65_RS17260 0.29 -0.3 3,722,635 - DZA65_RS17260 0.29 -0.1 3,722,635 - DZA65_RS17260 0.29 -0.4 3,722,635 - DZA65_RS17260 0.29 +0.1 3,722,635 - DZA65_RS17260 0.29 +0.6 3,722,635 - DZA65_RS17260 0.29 +0.0 3,722,635 - DZA65_RS17260 0.29 -0.9 3,722,635 - DZA65_RS17260 0.29 +0.7 3,722,638 + DZA65_RS17260 0.29 -2.0 3,722,638 + DZA65_RS17260 0.29 -2.5 3,722,638 + DZA65_RS17260 0.29 +0.3 3,722,638 + DZA65_RS17260 0.29 +1.1 3,722,638 + DZA65_RS17260 0.29 -0.7 3,722,638 + +0.8 3,722,638 + DZA65_RS17260 0.29 +0.6 3,722,638 + DZA65_RS17260 0.29 +1.1 3,722,638 + DZA65_RS17260 0.29 +0.3 3,722,638 + DZA65_RS17260 0.29 +0.6 3,722,638 + DZA65_RS17260 0.29 +0.4 3,722,638 + DZA65_RS17260 0.29 -0.4 3,722,638 + DZA65_RS17260 0.29 -1.0 3,722,638 + DZA65_RS17260 0.29 +0.4 3,722,638 + DZA65_RS17260 0.29 -0.4 3,722,639 - DZA65_RS17260 0.29 +0.4 3,722,639 - DZA65_RS17260 0.29 -0.6 3,722,639 - DZA65_RS17260 0.29 -0.3 3,722,639 - DZA65_RS17260 0.29 -1.5 3,722,639 - DZA65_RS17260 0.29 +1.7 3,722,639 - DZA65_RS17260 0.29 -2.2 3,722,639 - DZA65_RS17260 0.29 -0.1 3,722,646 + DZA65_RS17260 0.30 -1.2 3,722,819 + DZA65_RS17260 0.54 -0.6 3,722,819 + DZA65_RS17260 0.54 -1.2 3,722,819 + DZA65_RS17260 0.54 +0.4 3,722,820 - DZA65_RS17260 0.54 -0.6 3,722,820 - DZA65_RS17260 0.54 -0.6 3,722,820 - DZA65_RS17260 0.54 +0.5 3,722,820 - DZA65_RS17260 0.54 -0.1 3,722,820 - DZA65_RS17260 0.54 +0.4 3,722,844 + DZA65_RS17260 0.58 -0.3 3,722,844 + DZA65_RS17260 0.58 -0.3 3,722,845 - DZA65_RS17260 0.58 +0.1 3,722,845 - DZA65_RS17260 0.58 +0.3 3,722,845 - DZA65_RS17260 0.58 +1.3 3,722,845 - DZA65_RS17260 0.58 +0.1 3,722,876 + DZA65_RS17260 0.62 +0.6 3,722,877 - DZA65_RS17260 0.62 +0.5 3,723,006 - DZA65_RS17260 0.80 +0.5 3,723,006 - DZA65_RS17260 0.80 +0.3 3,723,029 + DZA65_RS17260 0.83 -0.2 3,723,029 + DZA65_RS17260 0.83 -0.2 3,723,067 + DZA65_RS17260 0.89 -1.2 3,723,075 + DZA65_RS17260 0.90 +0.1 3,723,075 + DZA65_RS17260 0.90 -1.1 3,723,075 + DZA65_RS17260 0.90 -1.3 3,723,075 + DZA65_RS17260 0.90 +0.1 3,723,075 + DZA65_RS17260 0.90 -1.2 3,723,076 - +0.3 3,723,076 - +0.5 3,723,076 - -0.1 3,723,076 - +0.7 3,723,076 - -1.1 3,723,076 - -0.3 3,723,078 + -0.2 3,723,078 + +0.3 3,723,078 + +0.5 3,723,079 - -0.8 3,723,079 - -0.5 3,723,079 - -0.8 3,723,079 - -0.4 3,723,079 - +0.4 3,723,079 - +0.1 3,723,079 - -0.2 3,723,106 + -1.5 3,723,106 + -0.2 3,723,106 + -0.5 3,723,106 + -2.4 3,723,106 + +0.7 3,723,107 - -0.1 3,723,107 - -0.7 3,723,107 - +0.7 3,723,153 + +0.4 3,723,153 + -0.7 3,723,153 + +0.4 3,723,153 + -0.5 3,723,153 + +0.6 3,723,154 - +0.8 3,723,154 - +0.1 3,723,154 - +0.6 3,723,154 - +0.4 3,723,154 - -0.9 3,723,154 - -0.3 3,723,154 - -1.2 3,723,156 + +0.0 3,723,157 - -0.1 3,723,157 - +0.3 3,723,170 + -0.3 3,723,170 + -0.5 3,723,194 + -0.8 3,723,195 - -0.4 3,723,203 + -0.6 3,723,203 + -0.3 3,723,203 + -0.4 3,723,203 + -0.3 3,723,203 + -1.7 3,723,204 - +0.8 3,723,204 - +0.3 3,723,231 + -0.4 3,723,231 + -1.0 3,723,231 + -1.2 3,723,231 + -0.8 3,723,231 + +1.1 3,723,231 + -1.5 3,723,231 + -2.1 3,723,231 + -1.5 3,723,232 - -0.8 3,723,232 - -0.4 3,723,232 - -0.5 3,723,232 - -2.3 3,723,232 - +0.3 3,723,232 - +1.1 3,723,232 - -0.6 3,723,338 + DZA65_RS17265 0.19 +0.9
Or see this region's nucleotide sequence