Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16030

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,473,447	+		DZA65_RS16015	0.65	+0.8
3,473,448	-		DZA65_RS16015	0.65	-1.0
3,473,483	-		DZA65_RS16015	0.73	+0.1
3,473,483	-		DZA65_RS16015	0.73	+1.1
3,473,525	-		DZA65_RS16015	0.82	-0.8
3,473,672	+				-1.2
3,473,709	+				-0.1
3,473,713	+				-0.2
3,473,713	+				-0.3
3,473,713	+				+0.0
3,473,713	+				+0.6
3,473,713	+				+0.6
3,473,713	+				+0.6
3,473,713	+				-0.1
3,473,713	+				-2.0
3,473,781	+		DZA65_RS16025	0.15	+0.1
3,473,781	+		DZA65_RS16025	0.15	-1.2
3,473,781	+		DZA65_RS16025	0.15	+0.1
3,473,782	-		DZA65_RS16025	0.15	+0.0
3,473,864	+		DZA65_RS16025	0.33	+0.5
3,473,864	+		DZA65_RS16025	0.33	+0.1
3,473,864	+		DZA65_RS16025	0.33	+0.3
3,473,864	+		DZA65_RS16025	0.33	-0.2
3,473,865	-		DZA65_RS16025	0.34	-0.7
3,473,919	-		DZA65_RS16025	0.46	+0.0
3,474,032	-		DZA65_RS16025	0.71	-0.2
3,474,124	+				-1.1
3,474,146	-				-0.1
3,474,146	-				-0.6
3,474,158	-				+0.8
3,474,158	-				+0.8
3,474,158	-				-0.3
3,474,158	-				-1.1
3,474,165	+				-0.0
3,474,196	+				+0.4
3,474,196	+				-0.6
3,474,235	+				-0.6
3,474,235	+				+0.4
3,474,236	-				-1.4
3,474,271	-				+1.2
3,474,360	+				+0.0
3,474,360	+				-0.1
3,474,360	+				+0.8
3,474,360	+				+1.4
3,474,360	+				+0.5
3,474,361	-				-0.4
3,474,361	-				+0.4
3,474,361	-				-0.3
3,474,362	+				+0.7
3,474,362	+				+0.2
3,474,362	+				+0.8
3,474,362	+				-0.2
3,474,362	+				-1.0
3,474,362	+				-0.6
3,474,362	+				-0.6
3,474,363	-				-1.3
3,474,363	-				+0.2
3,474,363	-				+0.2
3,474,363	-				+0.4
3,474,363	-				+0.3
3,474,363	-				-1.9
3,474,363	-				-0.7
3,474,363	-				+0.4
3,474,363	-				-1.1
3,474,363	-				+0.2
3,474,372	+				-0.7
3,474,414	+				-0.1
3,474,416	+				-1.7
3,474,416	+				-0.3
3,474,417	-				-0.1
3,474,417	-				+2.0
3,474,417	-				-0.4
3,474,417	-				-1.1
3,474,417	-				+1.6
3,474,417	-				+1.1
3,474,452	+		DZA65_RS16030	0.14	-1.9
3,474,480	+		DZA65_RS16030	0.17	+0.6
3,474,480	+		DZA65_RS16030	0.17	-0.2
3,474,480	+		DZA65_RS16030	0.17	-0.5
3,474,480	+		DZA65_RS16030	0.17	-2.0
3,474,481	-		DZA65_RS16030	0.17	+0.2
3,474,481	-		DZA65_RS16030	0.17	+0.0
3,474,481	-		DZA65_RS16030	0.17	-0.5
3,474,483	+		DZA65_RS16030	0.18	-1.0
3,474,483	+		DZA65_RS16030	0.18	+0.3
3,474,484	-		DZA65_RS16030	0.18	-1.3
3,474,555	+		DZA65_RS16030	0.26	+0.0
3,474,556	-		DZA65_RS16030	0.26	+0.1
3,474,776	+		DZA65_RS16030	0.53	-0.2
3,474,776	+		DZA65_RS16030	0.53	-1.9
3,474,776	+		DZA65_RS16030	0.53	+0.2
3,474,792	-		DZA65_RS16030	0.55	-0.6
3,474,885	+		DZA65_RS16030	0.67	+0.4
3,474,885	+		DZA65_RS16030	0.67	-1.2
3,474,885	+		DZA65_RS16030	0.67	-1.9
3,474,886	-		DZA65_RS16030	0.67	+0.6
3,474,886	-		DZA65_RS16030	0.67	+0.4
3,475,027	+		DZA65_RS16030	0.84	-0.5
3,475,028	-		DZA65_RS16030	0.84	-0.9
3,475,028	-				+0.0
3,475,028	-		DZA65_RS16030	0.84	-0.1
3,475,056	-		DZA65_RS16030	0.88	-1.3
3,475,058	+		DZA65_RS16030	0.88	-0.9
3,475,059	-		DZA65_RS16030	0.88	-0.3
3,475,059	-		DZA65_RS16030	0.88	-0.9
3,475,075	+				+0.3
3,475,143	+				+0.3
3,475,159	+				+1.0
3,475,159	+				+0.5
3,475,159	+				-0.1
3,475,159	+				-1.2
3,475,160	-				-0.5
3,475,160	-				-0.9
3,475,276	+				+1.0
3,475,276	+				+0.2
3,475,276	+				+1.0
3,475,277	-				-0.4
3,475,277	-				+0.2
3,475,277	-				+1.0
3,475,277	-				+0.3
3,475,328	-				+0.4
3,475,372	+		DZA65_RS16035	0.12	+0.4
3,475,373	-		DZA65_RS16035	0.12	-0.1
3,475,382	+		DZA65_RS16035	0.13	-0.3
3,475,382	+		DZA65_RS16035	0.13	-0.6
3,475,382	+		DZA65_RS16035	0.13	+0.5
3,475,382	+		DZA65_RS16035	0.13	-0.6
3,475,382	+		DZA65_RS16035	0.13	+0.1
3,475,382	+		DZA65_RS16035	0.13	-1.0
3,475,383	-		DZA65_RS16035	0.13	-1.8
3,475,383	-		DZA65_RS16035	0.13	+0.6
3,475,608	+		DZA65_RS16035	0.26	+0.2
3,475,608	+		DZA65_RS16035	0.26	+0.9
3,475,608	+		DZA65_RS16035	0.26	+0.6
3,475,608	+		DZA65_RS16035	0.26	-0.6
3,475,608	+		DZA65_RS16035	0.26	-1.8
3,475,608	+		DZA65_RS16035	0.26	-0.6
3,475,608	+		DZA65_RS16035	0.26	+0.5
3,475,609	-		DZA65_RS16035	0.26	+0.9
3,475,609	-		DZA65_RS16035	0.26	+0.0
3,475,609	-		DZA65_RS16035	0.26	+0.1
3,475,609	-		DZA65_RS16035	0.26	+0.3
3,475,732	+		DZA65_RS16035	0.34	-0.1
3,475,732	+		DZA65_RS16035	0.34	+0.8
3,475,732	+		DZA65_RS16035	0.34	-0.8
3,475,732	+		DZA65_RS16035	0.34	-0.1
3,475,733	-		DZA65_RS16035	0.34	-0.5
3,475,733	-		DZA65_RS16035	0.34	-0.1
3,475,756	-		DZA65_RS16035	0.35	-0.2
3,475,837	+		DZA65_RS16035	0.40	+0.0
3,475,850	-		DZA65_RS16035	0.41	-0.1
3,476,118	-				+2.3
3,476,147	+		DZA65_RS16035	0.59	-0.3
3,476,147	+		DZA65_RS16035	0.59	-0.7