Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15070

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
3,286,894	+			-0.7
3,286,894	+			+0.7
3,286,894	+			+0.5
3,286,894	+			-0.7
3,286,894	+			+1.1
3,286,894	+			+0.1
3,286,894	+			-0.4
3,286,894	+			-0.0
3,286,894	+			-0.5
3,286,894	+			+0.4
3,286,895	-			-1.4
3,286,895	-			+0.7
3,286,895	-			+1.2
3,286,895	-			-0.5
3,286,895	-			+0.5
3,286,895	-			-0.3
3,286,931	+	DZA65_RS22945	0.27	+0.5
3,286,931	+	DZA65_RS22945	0.27	-0.3
3,286,931	+	DZA65_RS22945	0.27	+0.3
3,286,931	+	DZA65_RS22945	0.27	-1.5
3,286,932	-	DZA65_RS22945	0.28	-1.0
3,286,932	-	DZA65_RS22945	0.28	+0.4
3,286,932	-	DZA65_RS22945	0.28	-0.0
3,286,932	-	DZA65_RS22945	0.28	-1.0
3,286,932	-	DZA65_RS22945	0.28	-1.9
3,286,932	-	DZA65_RS22945	0.28	+0.2
3,286,932	-	DZA65_RS22945	0.28	+0.5
3,286,932	-	DZA65_RS22945	0.28	+0.5
3,286,934	+	DZA65_RS22945	0.29	-0.5
3,286,934	+	DZA65_RS22945	0.29	+0.4
3,287,041	-			-0.4
3,287,041	-			+1.2
3,287,041	-			-0.4
3,287,237	+	DZA65_RS15060	0.53	+0.2
3,287,238	-	DZA65_RS15060	0.53	+0.1
3,287,262	+	DZA65_RS15060	0.59	-0.3
3,287,262	+	DZA65_RS15060	0.59	-1.4
3,287,263	-	DZA65_RS15060	0.60	-0.3
3,287,263	-	DZA65_RS15060	0.60	+0.3
3,287,263	-	DZA65_RS15060	0.60	+0.2
3,287,263	-	DZA65_RS15060	0.60	-0.0
3,287,402	+			+0.2
3,287,403	-			-2.0
3,287,403	-			-0.3
3,287,417	+			-0.8
3,287,417	+			-0.2
3,287,418	-			+0.1
3,287,418	-			-0.4
3,287,480	+	DZA65_RS15065	0.17	-0.2
3,287,480	+	DZA65_RS15065	0.17	-0.8
3,287,481	-	DZA65_RS15065	0.17	-1.0
3,287,514	+	DZA65_RS15065	0.26	-2.7
3,287,514	+	DZA65_RS15065	0.26	-0.8
3,287,515	-	DZA65_RS15065	0.26	+0.6
3,287,515	-	DZA65_RS15065	0.26	+0.7
3,287,515	-	DZA65_RS15065	0.26	-2.5
3,287,516	+	DZA65_RS15065	0.26	+0.2
3,287,516	+	DZA65_RS15065	0.26	-0.1
3,287,516	+	DZA65_RS15065	0.26	-1.0
3,287,516	+	DZA65_RS15065	0.26	-1.0
3,287,516	+	DZA65_RS15065	0.26	-0.6
3,287,516	+	DZA65_RS15065	0.26	+0.3
3,287,516	+	DZA65_RS15065	0.26	+0.2
3,287,516	+	DZA65_RS15065	0.26	+0.6
3,287,516	+	DZA65_RS15065	0.26	+1.6
3,287,516	+	DZA65_RS15065	0.26	+0.1
3,287,516	+	DZA65_RS15065	0.26	-0.1
3,287,516	+	DZA65_RS15065	0.26	+0.7
3,287,516	+	DZA65_RS15065	0.26	+0.4
3,287,516	+	DZA65_RS15065	0.26	+0.3
3,287,516	+	DZA65_RS15065	0.26	-1.1
3,287,516	+	DZA65_RS15065	0.26	-0.3
3,287,516	+	DZA65_RS15065	0.26	-0.8
3,287,516	+	DZA65_RS15065	0.26	+0.7
3,287,516	+	DZA65_RS15065	0.26	-0.8
3,287,516	+	DZA65_RS15065	0.26	+1.0
3,287,517	-	DZA65_RS15065	0.27	-0.4
3,287,517	-	DZA65_RS15065	0.27	-0.0
3,287,517	-	DZA65_RS15065	0.27	-0.3
3,287,517	-	DZA65_RS15065	0.27	+0.1
3,287,517	-	DZA65_RS15065	0.27	+0.1
3,287,517	-	DZA65_RS15065	0.27	+0.3
3,287,517	-	DZA65_RS15065	0.27	-0.0
3,287,517	-	DZA65_RS15065	0.27	-0.4
3,287,517	-	DZA65_RS15065	0.27	-0.6
3,287,517	-	DZA65_RS15065	0.27	-0.2
3,287,517	-	DZA65_RS15065	0.27	-0.4
3,287,517	-	DZA65_RS15065	0.27	+1.6
3,287,517	-	DZA65_RS15065	0.27	-1.5
3,287,517	-	DZA65_RS15065	0.27	+0.4
3,287,517	-	DZA65_RS15065	0.27	-0.3
3,287,517	-	DZA65_RS15065	0.27	+1.0
3,287,517	-	DZA65_RS15065	0.27	+0.3
3,287,517	-	DZA65_RS15065	0.27	-0.5
3,287,517	-	DZA65_RS15065	0.27	-0.6
3,287,517	-	DZA65_RS15065	0.27	-0.2
3,287,517	-	DZA65_RS15065	0.27	+0.3
3,287,517	-	DZA65_RS15065	0.27	+2.0
3,287,517	-	DZA65_RS15065	0.27	+0.4
3,287,517	-	DZA65_RS15065	0.27	-0.3
3,287,517	-	DZA65_RS15065	0.27	-0.6
3,287,553	-	DZA65_RS15065	0.36	-0.3
3,287,610	+	DZA65_RS15065	0.51	-0.2
3,287,610	+	DZA65_RS15065	0.51	-0.2
3,287,611	-	DZA65_RS15065	0.52	+0.4
3,287,611	-	DZA65_RS15065	0.52	-1.2
3,287,614	+	DZA65_RS15065	0.52	-0.8
3,287,615	-	DZA65_RS15065	0.53	+0.6
3,287,633	+	DZA65_RS15065	0.57	-0.4
3,287,633	+	DZA65_RS15065	0.57	-0.0
3,287,633	+	DZA65_RS15065	0.57	+0.0
3,287,731	-	DZA65_RS15065	0.83	-0.3
3,287,777	+			-2.2
3,287,777	+			-0.7
3,287,777	+			-0.0
3,287,777	+			-0.4
3,287,778	-			-0.0
3,287,778	-			-1.1
3,287,778	-			+0.7
3,287,778	-			-0.7
3,287,788	-			-0.3
3,287,812	-			+1.4
3,287,812	-			-0.0
3,287,893	+			-0.3
3,287,893	+			+0.1
3,287,893	+			+1.3
3,287,893	+			+1.0
3,287,893	+			+0.1
3,287,894	-			-0.4
3,287,973	+	DZA65_RS15070	0.11	+0.4
3,287,973	+	DZA65_RS15070	0.11	-0.9
3,287,974	-	DZA65_RS15070	0.12	-0.3
3,287,987	+	DZA65_RS15070	0.12	+0.3
3,288,078	+	DZA65_RS15070	0.19	+0.3
3,288,078	+	DZA65_RS15070	0.19	-0.8
3,288,078	+	DZA65_RS15070	0.19	-0.0
3,288,078	+	DZA65_RS15070	0.19	-2.2
3,288,079	-	DZA65_RS15070	0.19	+1.5
3,288,079	-	DZA65_RS15070	0.19	-0.2
3,288,079	-	DZA65_RS15070	0.19	-0.9
3,288,079	-	DZA65_RS15070	0.19	+0.1
3,288,079	-	DZA65_RS15070	0.19	-0.6
3,288,079	-	DZA65_RS15070	0.19	+0.4
3,288,079	-	DZA65_RS15070	0.19	-0.2
3,288,145	+	DZA65_RS15070	0.24	+0.6
3,288,145	+	DZA65_RS15070	0.24	-0.1
3,288,145	+	DZA65_RS15070	0.24	-0.4
3,288,145	+	DZA65_RS15070	0.24	-0.3
3,288,145	+	DZA65_RS15070	0.24	-0.1
3,288,145	+	DZA65_RS15070	0.24	-0.9
3,288,145	+	DZA65_RS15070	0.24	-0.2
3,288,145	+	DZA65_RS15070	0.24	-0.5
3,288,145	+	DZA65_RS15070	0.24	+1.0
3,288,145	+	DZA65_RS15070	0.24	-0.2
3,288,145	+	DZA65_RS15070	0.24	+0.9
3,288,145	+	DZA65_RS15070	0.24	+0.6
3,288,145	+	DZA65_RS15070	0.24	+1.3
3,288,146	-	DZA65_RS15070	0.24	-2.4
3,288,146	-	DZA65_RS15070	0.24	-0.9
3,288,146	-	DZA65_RS15070	0.24	-1.0
3,288,146	-	DZA65_RS15070	0.24	-0.4
3,288,146	-	DZA65_RS15070	0.24	+1.2
3,288,146	-	DZA65_RS15070	0.24	+0.2
3,288,146	-	DZA65_RS15070	0.24	-0.9
3,288,146	-	DZA65_RS15070	0.24	-2.5
3,288,146	-			-0.0
3,288,146	-	DZA65_RS15070	0.24	+1.0
3,288,146	-	DZA65_RS15070	0.24	-1.3
3,288,147	+	DZA65_RS15070	0.24	-0.0
3,288,147	+	DZA65_RS15070	0.24	-0.0
3,288,147	+	DZA65_RS15070	0.24	+0.4
3,288,147	+	DZA65_RS15070	0.24	-0.6
3,288,147	+	DZA65_RS15070	0.24	-0.0
3,288,147	+	DZA65_RS15070	0.24	+0.4
3,288,147	+	DZA65_RS15070	0.24	-0.4
3,288,147	+	DZA65_RS15070	0.24	+0.1
3,288,147	+	DZA65_RS15070	0.24	-0.4
3,288,147	+	DZA65_RS15070	0.24	+0.1
3,288,147	+	DZA65_RS15070	0.24	+0.7
3,288,147	+	DZA65_RS15070	0.24	-0.2
3,288,147	+	DZA65_RS15070	0.24	+0.6
3,288,147	+	DZA65_RS15070	0.24	+0.0
3,288,147	+	DZA65_RS15070	0.24	-0.2
3,288,147	+	DZA65_RS15070	0.24	+0.3
3,288,147	+	DZA65_RS15070	0.24	-0.4
3,288,147	+	DZA65_RS15070	0.24	+0.7
3,288,147	+	DZA65_RS15070	0.24	+0.2
3,288,147	+	DZA65_RS15070	0.24	-0.0
3,288,147	+	DZA65_RS15070	0.24	-0.1
3,288,148	-	DZA65_RS15070	0.24	-1.9
3,288,148	-	DZA65_RS15070	0.24	-0.7
3,288,148	-	DZA65_RS15070	0.24	-0.9
3,288,148	-	DZA65_RS15070	0.24	+0.1
3,288,148	-	DZA65_RS15070	0.24	-1.7
3,288,148	-	DZA65_RS15070	0.24	+0.1
3,288,148	-	DZA65_RS15070	0.24	+0.6
3,288,148	-	DZA65_RS15070	0.24	+1.1
3,288,148	-	DZA65_RS15070	0.24	-0.1
3,288,148	-	DZA65_RS15070	0.24	+0.1
3,288,148	-			+1.4
3,288,148	-	DZA65_RS15070	0.24	-0.6
3,288,151	+	DZA65_RS15070	0.24	-0.2
3,288,151	+	DZA65_RS15070	0.24	-0.6
3,288,151	+	DZA65_RS15070	0.24	+0.6
3,288,151	+	DZA65_RS15070	0.24	-0.4
3,288,151	+	DZA65_RS15070	0.24	+1.0
3,288,151	+	DZA65_RS15070	0.24	+1.5
3,288,151	+	DZA65_RS15070	0.24	-0.0
3,288,151	+	DZA65_RS15070	0.24	-1.4
3,288,151	+	DZA65_RS15070	0.24	+0.3
3,288,151	+	DZA65_RS15070	0.24	+0.5
3,288,151	+	DZA65_RS15070	0.24	-0.3
3,288,151	+	DZA65_RS15070	0.24	+1.7
3,288,151	+	DZA65_RS15070	0.24	+0.2
3,288,151	+	DZA65_RS15070	0.24	+0.4
3,288,152	-	DZA65_RS15070	0.24	-0.2
3,288,152	-	DZA65_RS15070	0.24	-0.4
3,288,152	-	DZA65_RS15070	0.24	-0.2
3,288,152	-	DZA65_RS15070	0.24	+0.3
3,288,152	-	DZA65_RS15070	0.24	-1.0
3,288,152	-	DZA65_RS15070	0.24	+0.6
3,288,152	-	DZA65_RS15070	0.24	+1.3
3,288,152	-	DZA65_RS15070	0.24	-0.4
3,288,152	-	DZA65_RS15070	0.24	+0.6
3,288,152	-	DZA65_RS15070	0.24	-0.0
3,288,152	-	DZA65_RS15070	0.24	-1.6
3,288,168	-	DZA65_RS15070	0.25	-0.6
3,288,216	+	DZA65_RS15070	0.29	-0.0
3,288,216	+	DZA65_RS15070	0.29	-0.4
3,288,216	+	DZA65_RS15070	0.29	+0.1
3,288,216	+	DZA65_RS15070	0.29	-0.9
3,288,216	+	DZA65_RS15070	0.29	+1.0
3,288,216	+	DZA65_RS15070	0.29	-0.9
3,288,216	+	DZA65_RS15070	0.29	-0.7
3,288,216	+	DZA65_RS15070	0.29	+1.3
3,288,217	-	DZA65_RS15070	0.29	-0.2
3,288,217	-	DZA65_RS15070	0.29	+0.6
3,288,217	-	DZA65_RS15070	0.29	+0.3
3,288,217	-	DZA65_RS15070	0.29	-1.8
3,288,217	-	DZA65_RS15070	0.29	+0.7
3,288,217	-	DZA65_RS15070	0.29	+1.0
3,288,217	-	DZA65_RS15070	0.29	+0.3
3,288,217	-	DZA65_RS15070	0.29	+1.3
3,288,217	-	DZA65_RS15070	0.29	-1.1
3,288,219	-	DZA65_RS15070	0.29	-0.5
3,288,364	+	DZA65_RS15070	0.39	-2.0
3,288,431	-	DZA65_RS15070	0.44	+0.2
3,288,528	-	DZA65_RS15070	0.50	+2.4
3,288,565	+	DZA65_RS15070	0.53	+0.5
3,288,566	-	DZA65_RS15070	0.53	-0.8
3,288,566	-	DZA65_RS15070	0.53	+0.2
3,288,706	+	DZA65_RS15070	0.63	+0.5
3,288,706	+	DZA65_RS15070	0.63	-0.2
3,288,724	+	DZA65_RS15070	0.64	-0.4
3,288,724	+	DZA65_RS15070	0.64	-0.0
3,288,724	+	DZA65_RS15070	0.64	-0.9
3,288,724	+	DZA65_RS15070	0.64	+0.5
3,288,725	-	DZA65_RS15070	0.64	-0.9
3,288,725	-	DZA65_RS15070	0.64	+0.4
3,288,790	+	DZA65_RS15070	0.69	+0.8
3,288,790	+	DZA65_RS15070	0.69	-0.5
3,288,791	-	DZA65_RS15070	0.69	+0.1
3,288,791	-	DZA65_RS15070	0.69	-0.2
3,288,791	-	DZA65_RS15070	0.69	+1.0
3,288,791	-	DZA65_RS15070	0.69	+0.5
3,288,802	+	DZA65_RS15070	0.70	-0.2
3,288,803	-	DZA65_RS15070	0.70	+0.4
3,288,877	+	DZA65_RS15070	0.75	-0.8
3,288,877	+	DZA65_RS15070	0.75	-0.3
3,288,956	+	DZA65_RS15070	0.81	-0.2
3,288,956	+	DZA65_RS15070	0.81	-1.7
3,288,956	+	DZA65_RS15070	0.81	+0.7
3,288,956	+	DZA65_RS15070	0.81	+0.6
3,288,956	+	DZA65_RS15070	0.81	-0.4
3,288,957	-	DZA65_RS15070	0.81	-1.4
3,288,957	-	DZA65_RS15070	0.81	+1.1
3,288,957	-	DZA65_RS15070	0.81	-0.2
3,288,957	-	DZA65_RS15070	0.81	+0.3
3,288,957	-	DZA65_RS15070	0.81	-0.8
3,288,966	+	DZA65_RS15070	0.81	+1.0
3,288,966	+	DZA65_RS15070	0.81	+1.1
3,288,966	+	DZA65_RS15070	0.81	+0.5
3,288,967	-	DZA65_RS15070	0.81	+0.1
3,288,967	-	DZA65_RS15070	0.81	+0.2
3,288,967	-	DZA65_RS15070	0.81	-0.2
3,288,967	-	DZA65_RS15070	0.81	+0.0
3,288,967	-	DZA65_RS15070	0.81	-1.4
3,288,967	-	DZA65_RS15070	0.81	+1.0
3,288,967	-	DZA65_RS15070	0.81	+0.8
3,288,967	-	DZA65_RS15070	0.81	-0.7
3,288,972	+	DZA65_RS15070	0.82	-0.6
3,288,972	+	DZA65_RS15070	0.82	+0.2
3,289,026	+	DZA65_RS15070	0.86	-0.0
3,289,026	+	DZA65_RS15070	0.86	-0.7
3,289,026	+	DZA65_RS15070	0.86	-0.9
3,289,027	-	DZA65_RS15070	0.86	-0.5
3,289,112	+			-0.7
3,289,113	-			-0.6
3,289,113	-			+0.6
3,289,113	-			+0.0
3,289,113	-			-0.3
3,289,113	-			-1.0
3,289,113	-			-1.0
3,289,171	-			+0.4
3,289,219	+			+0.2
3,289,219	+			+0.1
3,289,239	+	DZA65_RS15075	0.10	+0.7
3,289,321	+	DZA65_RS15075	0.50	+0.4
3,289,321	+	DZA65_RS15075	0.50	+0.6
3,289,321	+	DZA65_RS15075	0.50	-0.2
3,289,321	+	DZA65_RS15075	0.50	-0.5
3,289,321	+	DZA65_RS15075	0.50	-1.9
3,289,321	+	DZA65_RS15075	0.50	+0.6
3,289,321	+	DZA65_RS15075	0.50	+0.1
3,289,322	-	DZA65_RS15075	0.51	+0.0
3,289,322	-	DZA65_RS15075	0.51	-0.6
3,289,322	-	DZA65_RS15075	0.51	+0.5
3,289,322	-	DZA65_RS15075	0.51	-0.2
3,289,322	-	DZA65_RS15075	0.51	+1.6
3,289,322	-	DZA65_RS15075	0.51	-0.0
3,289,322	-	DZA65_RS15075	0.51	+1.5
3,289,322	-	DZA65_RS15075	0.51	+1.2
3,289,322	-	DZA65_RS15075	0.51	+0.2
3,289,322	-			-0.0
3,289,324	+	DZA65_RS15075	0.52	-0.9
3,289,324	+	DZA65_RS15075	0.52	-0.1
3,289,324	+	DZA65_RS15075	0.52	+0.5
3,289,325	-	DZA65_RS15075	0.52	-0.1
3,289,325	-	DZA65_RS15075	0.52	-0.0
3,289,325	-	DZA65_RS15075	0.52	+0.6
3,289,325	-	DZA65_RS15075	0.52	+1.1
3,289,358	+	DZA65_RS15075	0.69	+0.4
3,289,359	-	DZA65_RS15075	0.69	-0.8
3,289,363	+	DZA65_RS15075	0.71	+0.7
3,289,363	+	DZA65_RS15075	0.71	-0.6
3,289,412	+			-1.2
3,289,413	-			-1.0
3,289,413	-			+0.6
3,289,419	+			-0.5
3,289,419	+			-0.1
3,289,420	-			-0.3
3,289,420	-			+0.6
3,289,482	-	DZA65_RS15080	0.11	+1.0
3,289,485	+	DZA65_RS15080	0.11	-0.4
3,289,485	+	DZA65_RS15080	0.11	-0.8
3,289,485	+	DZA65_RS15080	0.11	+0.3
3,289,485	+	DZA65_RS15080	0.11	+0.1
3,289,485	+			+1.4
3,289,485	+	DZA65_RS15080	0.11	-0.4
3,289,485	+	DZA65_RS15080	0.11	+0.6
3,289,485	+	DZA65_RS15080	0.11	-0.3
3,289,486	-	DZA65_RS15080	0.11	-1.5
3,289,586	+	DZA65_RS15080	0.27	+1.3
3,289,586	+	DZA65_RS15080	0.27	-0.2
3,289,587	-	DZA65_RS15080	0.27	-1.0
3,289,880	+	DZA65_RS15080	0.71	+1.0
3,289,881	-	DZA65_RS15080	0.71	-1.6
3,289,881	-	DZA65_RS15080	0.71	-0.6
3,289,884	+	DZA65_RS15080	0.72	+0.3
3,289,884	+	DZA65_RS15080	0.72	-0.3
3,289,884	+	DZA65_RS15080	0.72	-0.0
3,289,884	+	DZA65_RS15080	0.72	-1.2
3,289,884	+	DZA65_RS15080	0.72	+0.2
3,289,884	+	DZA65_RS15080	0.72	-2.4
3,289,885	-	DZA65_RS15080	0.72	-1.0
3,289,885	-	DZA65_RS15080	0.72	-2.8
3,289,885	-	DZA65_RS15080	0.72	-0.5
3,289,885	-	DZA65_RS15080	0.72	-0.7
3,289,885	-	DZA65_RS15080	0.72	-1.1
3,289,885	-	DZA65_RS15080	0.72	+1.0
3,289,885	-	DZA65_RS15080	0.72	+1.2
3,289,891	-	DZA65_RS15080	0.73	+1.0
3,289,995	-	DZA65_RS15080	0.88	-0.8
3,290,046	+			-0.9
3,290,046	+			-1.0
3,290,047	-			+0.2
3,290,047	-			+0.6
3,290,047	-			-0.2
3,290,047	-			-0.3
3,290,047	-			-0.2
3,290,138	+	DZA65_RS15085	0.14	-0.7
3,290,139	-	DZA65_RS15085	0.15	-0.9
3,290,139	-	DZA65_RS15085	0.15	-0.6
3,290,139	-	DZA65_RS15085	0.15	-1.8

Or see this region's nucleotide sequence