Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12620

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,701,873	+		DZA65_RS12615	0.39	-0.5
2,701,873	+		DZA65_RS12615	0.39	+0.6
2,701,874	-		DZA65_RS12615	0.39	+0.6
2,701,983	+		DZA65_RS12615	0.47	-1.1
2,701,983	+		DZA65_RS12615	0.47	+0.7
2,701,984	-		DZA65_RS12615	0.48	+0.7
2,701,998	+		DZA65_RS12615	0.49	+1.5
2,702,061	+		DZA65_RS12615	0.53	+0.8
2,702,062	-		DZA65_RS12615	0.53	+1.2
2,702,104	-		DZA65_RS12615	0.56	-0.9
2,702,149	+		DZA65_RS12615	0.60	+0.6
2,702,149	+		DZA65_RS12615	0.60	-0.9
2,702,149	+		DZA65_RS12615	0.60	-2.2
2,702,149	+		DZA65_RS12615	0.60	-0.6
2,702,149	+		DZA65_RS12615	0.60	-1.2
2,702,149	+		DZA65_RS12615	0.60	-0.1
2,702,149	+		DZA65_RS12615	0.60	-0.7
2,702,149	+		DZA65_RS12615	0.60	-0.7
2,702,149	+				+1.4
2,702,149	+		DZA65_RS12615	0.60	-0.2
2,702,150	-		DZA65_RS12615	0.60	+0.0
2,702,150	-		DZA65_RS12615	0.60	-0.4
2,702,150	-		DZA65_RS12615	0.60	-0.7
2,702,150	-		DZA65_RS12615	0.60	+0.2
2,702,150	-				+0.3
2,702,150	-		DZA65_RS12615	0.60	-2.5
2,702,150	-		DZA65_RS12615	0.60	-0.2
2,702,240	+		DZA65_RS12615	0.66	+0.1
2,702,240	+		DZA65_RS12615	0.66	-0.9
2,702,240	+		DZA65_RS12615	0.66	-0.2
2,702,241	-		DZA65_RS12615	0.67	-0.5
2,702,241	-		DZA65_RS12615	0.67	+0.3
2,702,241	-		DZA65_RS12615	0.67	-0.6
2,702,462	+		DZA65_RS12615	0.83	+0.8
2,702,511	-		DZA65_RS12615	0.86	+0.9
2,702,543	+		DZA65_RS12615	0.89	+0.1
2,702,543	+		DZA65_RS12615	0.89	-0.2
2,702,544	-		DZA65_RS12615	0.89	-0.0
2,702,544	-		DZA65_RS12615	0.89	-0.1
2,702,544	-		DZA65_RS12615	0.89	-0.6
2,702,544	-		DZA65_RS12615	0.89	+0.6
2,702,544	-		DZA65_RS12615	0.89	-1.5
2,702,544	-		DZA65_RS12615	0.89	-0.2
2,702,544	-		DZA65_RS12615	0.89	+1.2
2,702,561	-				-2.2
2,702,561	-				+0.0
2,702,561	-				-0.9
2,702,561	-				+0.1
2,702,567	+				-0.7
2,702,588	+				-1.6
2,702,689	+				-1.7
2,702,690	-				+1.3
2,702,692	+				-0.0
2,702,692	+				-2.1
2,702,692	+				+1.3
2,702,693	-				-0.6
2,702,693	-				+0.8
2,702,693	-				+1.0
2,702,693	-				+0.5
2,702,708	+				-0.2
2,702,709	-				-0.5
2,702,709	-				-0.2
2,702,709	-				+0.5
2,702,709	-				+0.8
2,702,747	+				-1.0
2,702,747	+				+0.1
2,702,747	+				+0.1
2,702,752	-				-0.9
2,702,780	+				+1.2
2,702,781	-				+0.3
2,702,782	+				-0.0
2,702,782	+				+0.1
2,702,782	+				+0.1
2,702,782	+				+0.6
2,702,782	+				+0.7
2,702,783	-				-0.6
2,702,783	-				-0.2
2,702,815	-				+0.6
2,702,839	+				+0.3
2,702,882	+				-0.4
2,702,882	+				-0.5
2,702,882	+				-0.0
2,702,883	-				-0.3
2,702,953	-				+0.4
2,702,968	-				-0.3
2,702,991	+				-0.7
2,703,143	+		DZA65_RS12620	0.21	-0.4
2,703,143	+		DZA65_RS12620	0.21	+0.7
2,703,143	+		DZA65_RS12620	0.21	-1.5
2,703,143	+		DZA65_RS12620	0.21	-1.6
2,703,144	-		DZA65_RS12620	0.21	-0.2
2,703,144	-		DZA65_RS12620	0.21	+1.2
2,703,144	-		DZA65_RS12620	0.21	-1.0
2,703,144	-		DZA65_RS12620	0.21	+0.3
2,703,171	-		DZA65_RS12620	0.23	-0.9
2,703,171	-		DZA65_RS12620	0.23	+0.7
2,703,200	-		DZA65_RS12620	0.25	-0.5
2,703,259	-		DZA65_RS12620	0.30	+0.8
2,703,259	-		DZA65_RS12620	0.30	-1.2
2,703,259	-		DZA65_RS12620	0.30	+0.5
2,703,266	+		DZA65_RS12620	0.30	-1.0
2,703,620	-		DZA65_RS12620	0.57	-1.2
2,703,652	+		DZA65_RS12620	0.59	-0.2
2,703,653	-		DZA65_RS12620	0.59	-0.4
2,703,653	-		DZA65_RS12620	0.59	-0.7
2,703,676	+		DZA65_RS12620	0.61	-0.5
2,703,676	+		DZA65_RS12620	0.61	-0.6
2,703,676	+		DZA65_RS12620	0.61	-2.7
2,703,676	+		DZA65_RS12620	0.61	+0.4
2,703,676	+		DZA65_RS12620	0.61	+0.1
2,703,676	+		DZA65_RS12620	0.61	-0.7
2,703,676	+		DZA65_RS12620	0.61	+0.5
2,703,676	+		DZA65_RS12620	0.61	+0.6
2,703,676	+		DZA65_RS12620	0.61	+1.2
2,703,677	-		DZA65_RS12620	0.61	-2.5
2,703,677	-		DZA65_RS12620	0.61	-0.4
2,703,677	-		DZA65_RS12620	0.61	-3.1
2,703,677	-		DZA65_RS12620	0.61	-0.6
2,703,744	+		DZA65_RS12620	0.66	-0.7
2,703,745	-		DZA65_RS12620	0.66	-1.2
2,703,745	-		DZA65_RS12620	0.66	-0.0
2,703,841	+		DZA65_RS12620	0.73	-1.7
2,703,890	-		DZA65_RS12620	0.77	-0.3
2,703,890	-		DZA65_RS12620	0.77	-0.7
2,703,890	-		DZA65_RS12620	0.77	-0.2
2,703,890	-		DZA65_RS12620	0.77	-1.6
2,703,890	-		DZA65_RS12620	0.77	+0.1
2,703,890	-		DZA65_RS12620	0.77	+0.3
2,704,078	-				-0.4
2,704,105	-				-0.6
2,704,127	+				-0.1
2,704,127	+				+0.0
2,704,127	+				-0.5
2,704,127	+				-0.1
2,704,128	-				-1.1
2,704,130	+				+0.1
2,704,130	+				+1.8
2,704,130	+				-2.3
2,704,131	-				+0.4
2,704,131	-				-0.5
2,704,169	-				-1.0
2,704,198	+				+0.1
2,704,198	+				-0.4
2,704,198	+				-0.4
2,704,199	-				-0.2
2,704,199	-				-1.6
2,704,201	+				-1.6
2,704,202	-				-0.2
2,704,202	-				-0.0
2,704,202	-				-0.6
2,704,236	+				-0.5
2,704,322	+		DZA65_RS12625	0.12	+1.2
2,704,322	+		DZA65_RS12625	0.12	-0.4
2,704,322	+		DZA65_RS12625	0.12	-1.5
2,704,323	-		DZA65_RS12625	0.13	-1.3
2,704,323	-		DZA65_RS12625	0.13	+0.3
2,704,323	-		DZA65_RS12625	0.13	+0.4
2,704,323	-		DZA65_RS12625	0.13	-0.1
2,704,359	+		DZA65_RS12625	0.19	-0.7
2,704,390	+		DZA65_RS12625	0.24	-2.2
2,704,406	+		DZA65_RS12625	0.27	+0.1
2,704,407	-		DZA65_RS12625	0.27	-0.4
2,704,407	-		DZA65_RS12625	0.27	-0.9
2,704,407	-		DZA65_RS12625	0.27	-2.1
2,704,458	+		DZA65_RS12625	0.36	-0.0
2,704,471	-		DZA65_RS12625	0.39	+0.3
2,704,479	+		DZA65_RS12625	0.40	-1.5
2,704,480	-		DZA65_RS12625	0.40	-2.1
2,704,480	-		DZA65_RS12625	0.40	+1.3
2,704,498	+		DZA65_RS12625	0.43	+0.6
2,704,500	+		DZA65_RS12625	0.44	+0.5
2,704,500	+		DZA65_RS12625	0.44	-0.4
2,704,500	+		DZA65_RS12625	0.44	-0.2
2,704,500	+		DZA65_RS12625	0.44	-2.0
2,704,500	+		DZA65_RS12625	0.44	+0.2
2,704,501	-		DZA65_RS12625	0.44	+0.0
2,704,501	-		DZA65_RS12625	0.44	-1.2
2,704,501	-		DZA65_RS12625	0.44	-0.6
2,704,501	-		DZA65_RS12625	0.44	-0.9
2,704,506	+		DZA65_RS12625	0.45	-0.9
2,704,507	-		DZA65_RS12625	0.45	-1.0
2,704,611	+				+0.4
2,704,671	+		DZA65_RS12625	0.74	+0.7
2,704,671	+		DZA65_RS12625	0.74	-0.2
2,704,681	-		DZA65_RS12625	0.76	-1.2
2,704,699	+		DZA65_RS12625	0.79	+0.2
2,704,699	+		DZA65_RS12625	0.79	-1.3
2,704,700	-		DZA65_RS12625	0.79	-1.0
2,704,700	-		DZA65_RS12625	0.79	+0.3
2,704,700	-		DZA65_RS12625	0.79	-2.5
2,704,700	-		DZA65_RS12625	0.79	-0.0
2,704,749	+		DZA65_RS12625	0.88	+0.1
2,704,830	+				+0.8
2,704,831	-				+1.2
2,704,834	+				-0.3
2,704,834	+				+0.6
2,704,834	+				-0.7
2,704,834	+				-0.3
2,704,835	-				+1.1
2,704,835	-				-1.2
2,704,835	-				+1.4
2,704,838	+				-0.2
2,704,838	+				+0.5
2,704,838	+				-2.0
2,704,838	+				-0.7
2,704,839	-				+0.3
2,704,839	-				-0.1
2,704,854	-				-0.5
2,704,856	+				+0.3
2,704,856	+				+0.2
2,704,857	-				+0.8
2,704,858	+				+0.8
2,704,858	+				+0.8
2,704,859	-				+0.1
2,704,859	-				+0.3
2,704,867	+				-0.5
2,704,867	+				+0.2
2,704,867	+				-1.2
2,704,868	-				-0.4
2,704,868	-				+0.2
2,704,877	+				+0.2
2,704,877	+				+0.5
2,704,877	+				-0.3
2,704,877	+				+0.6
2,704,877	+				-0.0
2,704,877	+				+0.3
2,704,878	-				+0.3
2,704,878	-				+0.8
2,704,878	-				+0.0
2,704,934	+				-0.1
2,704,999	+				+0.1
2,704,999	+				+0.0
2,704,999	+				+0.2
2,704,999	+				-0.5
2,704,999	+				-0.5
2,704,999	+				-0.4
2,704,999	+				+0.5
2,705,000	-				+0.8
2,705,000	-				-1.0
2,705,000	-				+0.4
2,705,000	-				-0.8
2,705,000	-				-1.2
2,705,000	-				-0.2
2,705,000	-				+2.0
2,705,000	-				-2.0
2,705,000	-				+1.0
2,705,003	+				+1.1
2,705,003	+				+0.4
2,705,004	-				-1.0
2,705,004	-				+2.2
2,705,055	+				-0.2
2,705,055	+		DZA65_RS12630	0.20	+0.1
2,705,055	+		DZA65_RS12630	0.20	+0.1
2,705,056	-		DZA65_RS12630	0.20	-0.4
2,705,056	-		DZA65_RS12630	0.20	+0.8
2,705,056	-		DZA65_RS12630	0.20	-0.9
2,705,056	-		DZA65_RS12630	0.20	+0.6
2,705,056	-				-1.2
2,705,059	+		DZA65_RS12630	0.21	+1.2
2,705,059	+		DZA65_RS12630	0.21	-1.3
2,705,059	+		DZA65_RS12630	0.21	-0.9
2,705,059	+		DZA65_RS12630	0.21	+0.1
2,705,060	-		DZA65_RS12630	0.21	+0.3
2,705,060	-		DZA65_RS12630	0.21	-0.7
2,705,060	-		DZA65_RS12630	0.21	-0.7
2,705,060	-		DZA65_RS12630	0.21	-0.7
2,705,060	-		DZA65_RS12630	0.21	-1.2
2,705,060	-		DZA65_RS12630	0.21	-1.1
2,705,060	-		DZA65_RS12630	0.21	+0.3
2,705,060	-		DZA65_RS12630	0.21	-0.8
2,705,078	+		DZA65_RS12630	0.26	-0.6
2,705,079	-		DZA65_RS12630	0.26	+0.3
2,705,079	-		DZA65_RS12630	0.26	+0.8
2,705,141	+		DZA65_RS12630	0.42	+0.3
2,705,141	+		DZA65_RS12630	0.42	+0.8
2,705,141	+		DZA65_RS12630	0.42	-0.5
2,705,142	-		DZA65_RS12630	0.43	-1.7
2,705,142	-		DZA65_RS12630	0.43	-1.0
2,705,189	+		DZA65_RS12630	0.55	+0.0