Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	LB
				remove
2,203,161	-	DZA65_RS10415	0.81	-0.6
2,203,272	+	DZA65_RS10415	0.84	-0.1
2,203,336	+	DZA65_RS10415	0.86	+1.2
2,203,336	+	DZA65_RS10415	0.86	-0.6
2,203,344	+	DZA65_RS10415	0.86	-1.6
2,203,344	+	DZA65_RS10415	0.86	-0.0
2,203,345	-	DZA65_RS10415	0.86	+0.3
2,203,345	-	DZA65_RS10415	0.86	+0.1
2,203,388	+	DZA65_RS10415	0.87	+0.2
2,203,388	+	DZA65_RS10415	0.87	-0.5
2,203,388	+	DZA65_RS10415	0.87	-0.7
2,203,388	+	DZA65_RS10415	0.87	+0.1
2,203,389	-	DZA65_RS10415	0.87	+1.0
2,203,389	-	DZA65_RS10415	0.87	-0.3
2,203,389	-	DZA65_RS10415	0.87	-0.4
2,203,600	+			-0.7
2,203,600	+			-0.2
2,203,658	-			-1.0
2,203,756	+			+0.3
2,203,756	+			-0.5
2,203,756	+			-0.5
2,203,757	-			-0.5
2,203,757	-			-1.5
2,203,933	-			-0.4
2,204,005	+			-0.2
2,204,006	-			-0.1
2,204,011	+			-0.5
2,204,011	+			-1.1
2,204,011	+			-0.9
2,204,011	+			-0.4
2,204,011	+			+0.3
2,204,011	+			-0.6
2,204,011	+			+1.4
2,204,011	+			+1.0
2,204,012	-			+1.2
2,204,012	-			-1.6
2,204,012	-			-0.1
2,204,012	-			-0.2
2,204,012	-			+0.8
2,204,012	-			+0.4
2,204,045	+			-1.2
2,204,045	+			-1.2
2,204,045	+			-0.2
2,204,045	+			+0.2
2,204,045	+			-0.1
2,204,045	+			-0.7
2,204,046	-			-1.0
2,204,046	-			+0.8
2,204,046	-			-0.5
2,204,046	-			+0.5
2,204,046	-			+0.1
2,204,046	-			+0.1
2,204,046	-			-0.3
2,204,047	+			+0.5
2,204,047	+			+0.5
2,204,090	+			-0.1
2,204,090	+			-3.2
2,204,090	+			+0.3
2,204,090	+			+0.3
2,204,090	+			+0.5
2,204,090	+			-0.6
2,204,090	+			+0.2
2,204,091	-			-0.1
2,204,091	-			-0.3
2,204,091	-			+0.8
2,204,091	-			-0.6
2,204,091	-			+0.4
2,204,091	-			-0.3
2,204,111	+			-0.1
2,204,111	+			-0.5
2,204,169	-			+0.5
2,204,169	-			+0.8
2,204,276	+	DZA65_RS10420	0.14	-1.7
2,204,276	+	DZA65_RS10420	0.14	-0.7
2,204,276	+	DZA65_RS10420	0.14	+0.1
2,204,276	+	DZA65_RS10420	0.14	+0.5
2,204,276	+	DZA65_RS10420	0.14	-1.3
2,204,318	+	DZA65_RS10420	0.15	+0.3
2,204,318	+	DZA65_RS10420	0.15	+0.8
2,204,319	-	DZA65_RS10420	0.15	-0.5
2,204,319	-	DZA65_RS10420	0.15	-0.9
2,204,319	-	DZA65_RS10420	0.15	+1.8
2,204,319	-	DZA65_RS10420	0.15	+0.1
2,204,392	-	DZA65_RS10420	0.18	+0.5
2,204,429	+	DZA65_RS10420	0.19	+0.4
2,204,429	+	DZA65_RS10420	0.19	-0.5
2,204,429	+	DZA65_RS10420	0.19	-0.7
2,204,473	+	DZA65_RS10420	0.20	+0.7
2,204,519	+	DZA65_RS10420	0.22	+0.2
2,204,549	+	DZA65_RS10420	0.23	-1.2
2,204,549	+	DZA65_RS10420	0.23	-0.4
2,204,550	-	DZA65_RS10420	0.23	-0.1
2,204,686	+	DZA65_RS10420	0.28	-0.6
2,204,687	-	DZA65_RS10420	0.28	+0.5
2,204,687	-	DZA65_RS10420	0.28	+0.5
2,204,687	-	DZA65_RS10420	0.28	+0.8
2,204,687	-	DZA65_RS10420	0.28	+0.5
2,204,835	+			+0.3
2,204,844	+	DZA65_RS10420	0.33	-0.7
2,204,844	+	DZA65_RS10420	0.33	+0.1
2,204,844	+	DZA65_RS10420	0.33	-0.5
2,204,844	+	DZA65_RS10420	0.33	-1.3
2,204,844	+	DZA65_RS10420	0.33	-1.0
2,204,845	-	DZA65_RS10420	0.33	-0.0
2,204,845	-	DZA65_RS10420	0.33	-0.5
2,204,845	-	DZA65_RS10420	0.33	+0.5
2,204,845	-	DZA65_RS10420	0.33	-0.2
2,204,845	-	DZA65_RS10420	0.33	+0.7
2,204,845	-	DZA65_RS10420	0.33	+0.2
2,204,845	-	DZA65_RS10420	0.33	+1.4
2,204,845	-	DZA65_RS10420	0.33	-1.0
2,204,850	+	DZA65_RS10420	0.33	-1.7
2,204,851	-	DZA65_RS10420	0.33	-0.6
2,204,880	+	DZA65_RS10420	0.34	+0.6
2,204,895	+	DZA65_RS10420	0.35	-0.5
2,204,945	-	DZA65_RS10420	0.37	+0.6
2,204,947	+	DZA65_RS10420	0.37	+1.0
2,204,947	+	DZA65_RS10420	0.37	+0.0
2,204,947	+	DZA65_RS10420	0.37	-0.6
2,204,947	+	DZA65_RS10420	0.37	-1.3
2,204,948	-	DZA65_RS10420	0.37	+0.0
2,205,051	-	DZA65_RS10420	0.40	-0.6
2,205,051	-	DZA65_RS10420	0.40	-0.9
2,205,053	+	DZA65_RS10420	0.40	-2.6
2,205,053	+	DZA65_RS10420	0.40	-0.2
2,205,053	+	DZA65_RS10420	0.40	-0.9
2,205,054	-	DZA65_RS10420	0.40	+0.8
2,205,054	-	DZA65_RS10420	0.40	-0.2
2,205,054	-	DZA65_RS10420	0.40	-1.6
2,205,054	-	DZA65_RS10420	0.40	+0.5
2,205,054	-	DZA65_RS10420	0.40	-2.0
2,205,054	-	DZA65_RS10420	0.40	-0.3
2,205,058	+	DZA65_RS10420	0.40	+0.8
2,205,079	+	DZA65_RS10420	0.41	-0.3
2,205,079	+	DZA65_RS10420	0.41	+0.3
2,205,080	-	DZA65_RS10420	0.41	+0.8
2,205,083	+	DZA65_RS10420	0.41	-2.2
2,205,084	-	DZA65_RS10420	0.41	+0.2
2,205,084	-	DZA65_RS10420	0.41	-0.1
2,205,084	-	DZA65_RS10420	0.41	-0.3
2,205,084	-	DZA65_RS10420	0.41	+1.2
2,205,084	-	DZA65_RS10420	0.41	-1.2
2,205,116	-	DZA65_RS10420	0.42	+0.3
2,205,159	-	DZA65_RS10420	0.44	-2.6
2,205,159	-	DZA65_RS10420	0.44	-1.1
2,205,353	+	DZA65_RS10420	0.51	-0.2
2,205,353	+	DZA65_RS10420	0.51	-0.7
2,205,369	+	DZA65_RS10420	0.51	-0.2
2,205,369	+	DZA65_RS10420	0.51	-1.0
2,205,369	+	DZA65_RS10420	0.51	-0.3
2,205,369	+	DZA65_RS10420	0.51	-0.9
2,205,370	-	DZA65_RS10420	0.51	+0.8
2,205,370	-	DZA65_RS10420	0.51	-0.2
2,205,370	-	DZA65_RS10420	0.51	-1.6
2,205,370	-	DZA65_RS10420	0.51	-1.0
2,205,488	+	DZA65_RS10420	0.55	+1.0
2,205,489	-	DZA65_RS10420	0.55	+0.8
2,205,596	+	DZA65_RS10420	0.59	-1.7
2,205,596	+	DZA65_RS10420	0.59	-1.5
2,205,597	-	DZA65_RS10420	0.59	+0.4
2,205,597	-	DZA65_RS10420	0.59	+0.5
2,205,649	+	DZA65_RS10420	0.61	+0.3
2,205,650	-	DZA65_RS10420	0.61	+0.1
2,205,682	-	DZA65_RS10420	0.62	+1.0
2,205,696	-	DZA65_RS10420	0.62	-0.7
2,205,696	-	DZA65_RS10420	0.62	-0.6
2,205,776	+	DZA65_RS10420	0.65	-0.6
2,205,832	-	DZA65_RS10420	0.67	-1.6
2,205,833	+	DZA65_RS10420	0.67	-1.9
2,205,833	+	DZA65_RS10420	0.67	-0.4
2,205,982	+	DZA65_RS10420	0.72	-0.5
2,205,983	-	DZA65_RS10420	0.72	-0.0
2,206,011	+	DZA65_RS10420	0.73	-1.0
2,206,080	-	DZA65_RS10420	0.75	-1.0
2,206,096	-	DZA65_RS10420	0.76	-0.9
2,206,096	-	DZA65_RS10420	0.76	-0.2
2,206,111	+	DZA65_RS10420	0.76	+0.5
2,206,111	+	DZA65_RS10420	0.76	-1.1
2,206,111	+	DZA65_RS10420	0.76	-0.5
2,206,112	-	DZA65_RS10420	0.76	+0.6
2,206,112	-	DZA65_RS10420	0.76	+1.0
2,206,138	+	DZA65_RS10420	0.77	+0.5
2,206,138	+	DZA65_RS10420	0.77	-0.6
2,206,139	-	DZA65_RS10420	0.77	+1.3
2,206,223	+	DZA65_RS10420	0.80	-0.2
2,206,223	+	DZA65_RS10420	0.80	+0.1
2,206,223	+	DZA65_RS10420	0.80	+0.4
2,206,223	+	DZA65_RS10420	0.80	+1.3
2,206,223	+	DZA65_RS10420	0.80	-1.2
2,206,223	+	DZA65_RS10420	0.80	-0.1
2,206,223	+	DZA65_RS10420	0.80	+0.4
2,206,223	+	DZA65_RS10420	0.80	+1.8
2,206,223	+	DZA65_RS10420	0.80	-1.3
2,206,223	+	DZA65_RS10420	0.80	+0.3
2,206,223	+	DZA65_RS10420	0.80	+0.0
2,206,223	+	DZA65_RS10420	0.80	-0.7
2,206,223	+	DZA65_RS10420	0.80	-0.3
2,206,223	+	DZA65_RS10420	0.80	-0.4
2,206,223	+	DZA65_RS10420	0.80	+0.5
2,206,223	+	DZA65_RS10420	0.80	-0.6
2,206,224	-	DZA65_RS10420	0.80	-0.4
2,206,224	-	DZA65_RS10420	0.80	+0.8
2,206,224	-	DZA65_RS10420	0.80	+0.8
2,206,224	-	DZA65_RS10420	0.80	-1.7
2,206,224	-	DZA65_RS10420	0.80	-0.3
2,206,224	-	DZA65_RS10420	0.80	-0.4
2,206,224	-	DZA65_RS10420	0.80	+0.5
2,206,224	-	DZA65_RS10420	0.80	+0.5
2,206,224	-	DZA65_RS10420	0.80	-0.3
2,206,224	-	DZA65_RS10420	0.80	+0.0
2,206,224	-	DZA65_RS10420	0.80	+1.0
2,206,224	-	DZA65_RS10420	0.80	+0.4
2,206,224	-	DZA65_RS10420	0.80	-0.0
2,206,224	-			+2.8
2,206,224	-	DZA65_RS10420	0.80	+0.4
2,206,224	-	DZA65_RS10420	0.80	+0.3
2,206,227	+	DZA65_RS10420	0.80	-0.2
2,206,227	+	DZA65_RS10420	0.80	+0.2
2,206,228	-			+1.8
2,206,228	-	DZA65_RS10420	0.80	+0.1
2,206,228	-	DZA65_RS10420	0.80	+0.4
2,206,228	-	DZA65_RS10420	0.80	+0.3
2,206,228	-	DZA65_RS10420	0.80	+0.2
2,206,264	-	DZA65_RS10420	0.82	-2.5
2,206,264	-	DZA65_RS10420	0.82	+0.6
2,206,264	-	DZA65_RS10420	0.82	-0.6
2,206,326	+	DZA65_RS10420	0.84	+1.7
2,206,326	+	DZA65_RS10420	0.84	+0.7
2,206,326	+	DZA65_RS10420	0.84	-0.6
2,206,326	+	DZA65_RS10420	0.84	-0.2
2,206,326	+	DZA65_RS10420	0.84	-0.4
2,206,326	+	DZA65_RS10420	0.84	+0.8
2,206,326	+	DZA65_RS10420	0.84	-0.3
2,206,327	-	DZA65_RS10420	0.84	-1.0
2,206,327	-	DZA65_RS10420	0.84	+0.2
2,206,331	+	DZA65_RS10420	0.84	-0.2
2,206,370	+	DZA65_RS10420	0.85	+0.8
2,206,370	+	DZA65_RS10420	0.85	-0.2
2,206,370	+	DZA65_RS10420	0.85	-0.2
2,206,370	+	DZA65_RS10420	0.85	+0.6
2,206,370	+	DZA65_RS10420	0.85	+1.1
2,206,370	+	DZA65_RS10420	0.85	-1.1
2,206,370	+	DZA65_RS10420	0.85	+0.6
2,206,370	+	DZA65_RS10420	0.85	-0.7
2,206,370	+	DZA65_RS10420	0.85	-1.5
2,206,370	+	DZA65_RS10420	0.85	+1.0
2,206,370	+	DZA65_RS10420	0.85	+0.4
2,206,371	-	DZA65_RS10420	0.85	+0.5
2,206,371	-	DZA65_RS10420	0.85	+0.0
2,206,371	-	DZA65_RS10420	0.85	-0.7
2,206,371	-	DZA65_RS10420	0.85	-0.5
2,206,371	-	DZA65_RS10420	0.85	+1.8
2,206,371	-	DZA65_RS10420	0.85	+0.4
2,206,371	-	DZA65_RS10420	0.85	-0.7
2,206,371	-	DZA65_RS10420	0.85	-0.2
2,206,371	-	DZA65_RS10420	0.85	-0.1
2,206,371	-	DZA65_RS10420	0.85	+0.3
2,206,371	-	DZA65_RS10420	0.85	-1.3
2,206,371	-	DZA65_RS10420	0.85	-0.3
2,206,371	-	DZA65_RS10420	0.85	-0.3
2,206,371	-	DZA65_RS10420	0.85	+0.4
2,206,429	+	DZA65_RS10420	0.87	+1.5
2,206,429	+	DZA65_RS10420	0.87	+1.6
2,206,429	+	DZA65_RS10420	0.87	-0.6
2,206,429	+	DZA65_RS10420	0.87	+0.2
2,206,429	+			-0.2
2,206,429	+	DZA65_RS10420	0.87	-0.3
2,206,429	+	DZA65_RS10420	0.87	-0.3
2,206,430	-	DZA65_RS10420	0.87	+0.3
2,206,430	-	DZA65_RS10420	0.87	+1.2
2,206,529	+			-0.2
2,206,529	+			+0.1
2,206,530	-			+1.0
2,206,530	-			-1.3
2,206,530	-			-1.2
2,206,530	-			-0.4
2,206,693	+			+1.1
2,206,763	-			-2.2
2,206,763	-			+0.4
2,206,794	+			+0.8
2,206,794	+			+1.3
2,206,794	+			-0.6
2,206,794	+			-0.4
2,206,794	+			-0.9
2,206,794	+			-0.3
2,206,794	+			+0.6
2,206,795	-			+1.8
2,206,795	-			+0.5
2,206,795	-			+0.4
2,206,795	-			-1.6
2,206,795	-			+0.8
2,206,795	-			-1.1
2,206,795	-			-0.5
2,206,795	-			-1.3
2,206,795	-			+2.1
2,206,795	-			-2.5
2,206,966	-			-1.3
2,207,308	-	DZA65_RS10425	0.15	-1.7
2,207,379	+	DZA65_RS10425	0.17	+0.1
2,207,379	+	DZA65_RS10425	0.17	+0.2
2,207,390	-	DZA65_RS10425	0.17	-1.4
2,207,390	-	DZA65_RS10425	0.17	-0.7
2,207,422	+	DZA65_RS10425	0.18	+0.5
2,207,422	+	DZA65_RS10425	0.18	+0.8
2,207,533	+	DZA65_RS10425	0.22	-0.8
2,207,597	+	DZA65_RS10425	0.23	-0.6
2,207,618	+	DZA65_RS10425	0.24	-0.2
2,207,618	+	DZA65_RS10425	0.24	+0.8

Or see this region's nucleotide sequence