Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08400

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08390 and DZA65_RS08395 overlap by 4 nucleotidesDZA65_RS08395 and DZA65_RS08400 are separated by 3 nucleotidesDZA65_RS08400 and DZA65_RS08405 overlap by 9 nucleotides DZA65_RS08390: DZA65_RS08390 - ABC transporter permease, at 1,769,937 to 1,770,911 _RS08390 DZA65_RS08395: DZA65_RS08395 - ABC transporter permease, at 1,770,908 to 1,771,828 _RS08395 DZA65_RS08400: DZA65_RS08400 - ABC transporter ATP-binding protein, at 1,771,832 to 1,773,625 _RS08400 DZA65_RS08405: DZA65_RS08405 - MFS transporter, at 1,773,617 to 1,774,288 _RS08405 Position (kb) 1771 1772 1773 1774Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1770.867 kb on + strandat 1770.867 kb on + strandat 1770.868 kb on - strandat 1770.935 kb on - strandat 1770.976 kb on + strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1770.977 kb on - strandat 1771.152 kb on + strand, within DZA65_RS08395at 1771.152 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.157 kb on + strand, within DZA65_RS08395at 1771.158 kb on - strand, within DZA65_RS08395at 1771.158 kb on - strand, within DZA65_RS08395at 1771.158 kb on - strand, within DZA65_RS08395at 1771.209 kb on - strand, within DZA65_RS08395at 1771.330 kb on + strand, within DZA65_RS08395at 1771.331 kb on - strand, within DZA65_RS08395at 1771.362 kb on + strand, within DZA65_RS08395at 1771.362 kb on + strand, within DZA65_RS08395at 1771.363 kb on - strand, within DZA65_RS08395at 1771.366 kb on + strand, within DZA65_RS08395at 1771.366 kb on + strand, within DZA65_RS08395at 1771.366 kb on + strand, within DZA65_RS08395at 1771.367 kb on - strand, within DZA65_RS08395at 1771.367 kb on - strand, within DZA65_RS08395at 1771.367 kb on - strand, within DZA65_RS08395at 1771.414 kb on + strand, within DZA65_RS08395at 1771.445 kb on + strand, within DZA65_RS08395at 1771.445 kb on + strand, within DZA65_RS08395at 1771.449 kb on - strand, within DZA65_RS08395at 1771.449 kb on - strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.496 kb on + strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.497 kb on - strand, within DZA65_RS08395at 1771.600 kb on + strand, within DZA65_RS08395at 1771.600 kb on + strandat 1771.607 kb on + strand, within DZA65_RS08395at 1771.703 kb on + strand, within DZA65_RS08395at 1771.703 kb on + strand, within DZA65_RS08395at 1771.704 kb on - strand, within DZA65_RS08395at 1771.811 kb on - strandat 1771.811 kb on - strandat 1771.906 kb on - strandat 1771.996 kb on + strandat 1771.996 kb on + strandat 1771.996 kb on + strandat 1771.997 kb on - strandat 1772.030 kb on - strand, within DZA65_RS08400at 1772.144 kb on - strand, within DZA65_RS08400at 1772.152 kb on - strand, within DZA65_RS08400at 1772.250 kb on + strand, within DZA65_RS08400at 1772.286 kb on - strand, within DZA65_RS08400at 1772.509 kb on + strand, within DZA65_RS08400at 1772.509 kb on + strand, within DZA65_RS08400at 1772.509 kb on + strand, within DZA65_RS08400at 1772.510 kb on - strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.519 kb on + strand, within DZA65_RS08400at 1772.520 kb on - strand, within DZA65_RS08400at 1772.520 kb on - strand, within DZA65_RS08400at 1772.520 kb on - strand, within DZA65_RS08400at 1772.520 kb on - strand, within DZA65_RS08400at 1772.520 kb on - strandat 1772.794 kb on - strand, within DZA65_RS08400at 1772.794 kb on - strand, within DZA65_RS08400at 1773.014 kb on + strand, within DZA65_RS08400at 1773.199 kb on - strand, within DZA65_RS08400at 1773.199 kb on - strand, within DZA65_RS08400at 1773.199 kb on - strand, within DZA65_RS08400at 1773.199 kb on - strand, within DZA65_RS08400at 1773.332 kb on + strand, within DZA65_RS08400at 1773.332 kb on + strand, within DZA65_RS08400at 1773.340 kb on + strand, within DZA65_RS08400at 1773.340 kb on + strand, within DZA65_RS08400at 1773.340 kb on + strand, within DZA65_RS08400at 1773.340 kb on + strand, within DZA65_RS08400at 1773.340 kb on + strand, within DZA65_RS08400at 1773.340 kb on + strand, within DZA65_RS08400at 1773.361 kb on - strand, within DZA65_RS08400at 1773.371 kb on - strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.395 kb on + strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.396 kb on - strand, within DZA65_RS08400at 1773.435 kb on + strand, within DZA65_RS08400at 1773.458 kb on + strandat 1773.459 kb on - strandat 1773.563 kb on + strandat 1773.563 kb on + strandat 1773.564 kb on - strandat 1773.650 kb on - strandat 1773.704 kb on - strand, within DZA65_RS08405at 1773.704 kb on - strand, within DZA65_RS08405at 1773.747 kb on + strand, within DZA65_RS08405at 1773.774 kb on + strand, within DZA65_RS08405at 1773.803 kb on + strand, within DZA65_RS08405at 1773.813 kb on - strand, within DZA65_RS08405at 1773.869 kb on + strand, within DZA65_RS08405at 1773.869 kb on + strand, within DZA65_RS08405at 1773.869 kb on + strand, within DZA65_RS08405at 1773.869 kb on + strand, within DZA65_RS08405at 1773.869 kb on + strand, within DZA65_RS08405at 1773.869 kb on + strand, within DZA65_RS08405at 1773.869 kb on + strandat 1773.870 kb on - strand, within DZA65_RS08405at 1773.870 kb on - strand, within DZA65_RS08405at 1773.870 kb on - strand, within DZA65_RS08405at 1773.870 kb on - strand, within DZA65_RS08405at 1773.870 kb on - strand, within DZA65_RS08405at 1773.911 kb on + strand, within DZA65_RS08405at 1773.939 kb on - strand, within DZA65_RS08405at 1773.939 kb on - strand, within DZA65_RS08405at 1773.963 kb on - strand, within DZA65_RS08405at 1773.963 kb on - strand, within DZA65_RS08405at 1773.964 kb on + strand, within DZA65_RS08405at 1773.964 kb on + strand, within DZA65_RS08405at 1773.964 kb on + strand, within DZA65_RS08405at 1773.964 kb on + strand, within DZA65_RS08405at 1773.965 kb on - strand, within DZA65_RS08405at 1773.965 kb on - strand, within DZA65_RS08405at 1773.965 kb on - strand, within DZA65_RS08405at 1773.977 kb on - strand, within DZA65_RS08405at 1774.005 kb on + strand, within DZA65_RS08405at 1774.062 kb on - strand, within DZA65_RS08405at 1774.065 kb on - strand, within DZA65_RS08405at 1774.139 kb on + strand, within DZA65_RS08405at 1774.175 kb on + strand, within DZA65_RS08405at 1774.293 kb on + strandat 1774.294 kb on - strandat 1774.299 kb on - strandat 1774.341 kb on + strandat 1774.342 kb on - strandat 1774.342 kb on - strandat 1774.342 kb on - strandat 1774.346 kb on - strandat 1774.347 kb on + strandat 1774.354 kb on + strandat 1774.354 kb on + strandat 1774.355 kb on - strandat 1774.355 kb on - strandat 1774.355 kb on - strandat 1774.357 kb on + strandat 1774.380 kb on + strandat 1774.380 kb on + strandat 1774.380 kb on + strandat 1774.422 kb on - strandat 1774.422 kb on - strandat 1774.461 kb on + strandat 1774.520 kb on - strandat 1774.542 kb on + strandat 1774.555 kb on + strandat 1774.556 kb on - strandat 1774.582 kb on - strandat 1774.608 kb on + strandat 1774.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,770,867 + +1.4
1,770,867 + +0.0
1,770,868 - -0.3
1,770,935 - +2.2
1,770,976 + -1.4
1,770,977 - -0.6
1,770,977 - -0.1
1,770,977 - -0.7
1,770,977 - -0.9
1,770,977 - -0.4
1,770,977 - +1.2
1,771,152 + DZA65_RS08395 0.26 -0.4
1,771,152 + DZA65_RS08395 0.26 +0.3
1,771,157 + DZA65_RS08395 0.27 -0.1
1,771,157 + DZA65_RS08395 0.27 -1.3
1,771,157 + DZA65_RS08395 0.27 +1.5
1,771,157 + DZA65_RS08395 0.27 -2.1
1,771,158 - DZA65_RS08395 0.27 -0.1
1,771,158 - DZA65_RS08395 0.27 +0.5
1,771,158 - DZA65_RS08395 0.27 -0.4
1,771,209 - DZA65_RS08395 0.33 -0.8
1,771,330 + DZA65_RS08395 0.46 -0.2
1,771,331 - DZA65_RS08395 0.46 +0.6
1,771,362 + DZA65_RS08395 0.49 -0.9
1,771,362 + DZA65_RS08395 0.49 -0.3
1,771,363 - DZA65_RS08395 0.49 -0.1
1,771,366 + DZA65_RS08395 0.50 -1.3
1,771,366 + DZA65_RS08395 0.50 -1.4
1,771,366 + DZA65_RS08395 0.50 -0.3
1,771,367 - DZA65_RS08395 0.50 +0.1
1,771,367 - DZA65_RS08395 0.50 -0.6
1,771,367 - DZA65_RS08395 0.50 -0.3
1,771,414 + DZA65_RS08395 0.55 -0.7
1,771,445 + DZA65_RS08395 0.58 -1.1
1,771,445 + DZA65_RS08395 0.58 -1.5
1,771,449 - DZA65_RS08395 0.59 +0.3
1,771,449 - DZA65_RS08395 0.59 -0.3
1,771,496 + DZA65_RS08395 0.64 +0.7
1,771,496 + DZA65_RS08395 0.64 +0.0
1,771,496 + DZA65_RS08395 0.64 +0.7
1,771,496 + DZA65_RS08395 0.64 -1.2
1,771,496 + DZA65_RS08395 0.64 +0.4
1,771,497 - DZA65_RS08395 0.64 -0.7
1,771,497 - DZA65_RS08395 0.64 +0.0
1,771,497 - DZA65_RS08395 0.64 -0.4
1,771,497 - DZA65_RS08395 0.64 -1.2
1,771,497 - DZA65_RS08395 0.64 +0.9
1,771,497 - DZA65_RS08395 0.64 -0.0
1,771,497 - DZA65_RS08395 0.64 +0.3
1,771,497 - DZA65_RS08395 0.64 -1.4
1,771,600 + DZA65_RS08395 0.75 -1.3
1,771,600 + +0.5
1,771,607 + DZA65_RS08395 0.76 -2.1
1,771,703 + DZA65_RS08395 0.86 -0.4
1,771,703 + DZA65_RS08395 0.86 -0.7
1,771,704 - DZA65_RS08395 0.86 -0.1
1,771,811 - +0.4
1,771,811 - +0.3
1,771,906 - -1.8
1,771,996 + -0.3
1,771,996 + +0.2
1,771,996 + -0.6
1,771,997 - -0.7
1,772,030 - DZA65_RS08400 0.11 -0.4
1,772,144 - DZA65_RS08400 0.17 -1.4
1,772,152 - DZA65_RS08400 0.18 -0.7
1,772,250 + DZA65_RS08400 0.23 -0.7
1,772,286 - DZA65_RS08400 0.25 -1.3
1,772,509 + DZA65_RS08400 0.38 +0.7
1,772,509 + DZA65_RS08400 0.38 +0.1
1,772,509 + DZA65_RS08400 0.38 -0.1
1,772,510 - DZA65_RS08400 0.38 -0.6
1,772,519 + DZA65_RS08400 0.38 -1.9
1,772,519 + DZA65_RS08400 0.38 -0.9
1,772,519 + DZA65_RS08400 0.38 +0.1
1,772,519 + DZA65_RS08400 0.38 -0.2
1,772,519 + DZA65_RS08400 0.38 +0.1
1,772,519 + DZA65_RS08400 0.38 -0.2
1,772,519 + DZA65_RS08400 0.38 -2.1
1,772,519 + DZA65_RS08400 0.38 -0.3
1,772,520 - DZA65_RS08400 0.38 -0.9
1,772,520 - DZA65_RS08400 0.38 -1.1
1,772,520 - DZA65_RS08400 0.38 -0.2
1,772,520 - DZA65_RS08400 0.38 -0.8
1,772,520 - -0.1
1,772,794 - DZA65_RS08400 0.54 +2.8
1,772,794 - DZA65_RS08400 0.54 -0.6
1,773,014 + DZA65_RS08400 0.66 -0.1
1,773,199 - DZA65_RS08400 0.76 +0.4
1,773,199 - DZA65_RS08400 0.76 -1.1
1,773,199 - DZA65_RS08400 0.76 -0.2
1,773,199 - DZA65_RS08400 0.76 -0.2
1,773,332 + DZA65_RS08400 0.84 -1.1
1,773,332 + DZA65_RS08400 0.84 -0.4
1,773,340 + DZA65_RS08400 0.84 -1.4
1,773,340 + DZA65_RS08400 0.84 -0.3
1,773,340 + DZA65_RS08400 0.84 -0.3
1,773,340 + DZA65_RS08400 0.84 -1.3
1,773,340 + DZA65_RS08400 0.84 +0.4
1,773,340 + DZA65_RS08400 0.84 -0.8
1,773,361 - DZA65_RS08400 0.85 -0.4
1,773,371 - DZA65_RS08400 0.86 -0.4
1,773,395 + DZA65_RS08400 0.87 +0.1
1,773,395 + DZA65_RS08400 0.87 -0.4
1,773,395 + DZA65_RS08400 0.87 +0.2
1,773,395 + DZA65_RS08400 0.87 -0.8
1,773,395 + DZA65_RS08400 0.87 +1.2
1,773,395 + DZA65_RS08400 0.87 -0.1
1,773,395 + DZA65_RS08400 0.87 -2.6
1,773,395 + DZA65_RS08400 0.87 -0.4
1,773,395 + DZA65_RS08400 0.87 +0.1
1,773,395 + DZA65_RS08400 0.87 +0.7
1,773,396 - DZA65_RS08400 0.87 -2.4
1,773,396 - DZA65_RS08400 0.87 +0.2
1,773,396 - DZA65_RS08400 0.87 -1.7
1,773,396 - DZA65_RS08400 0.87 +1.0
1,773,396 - DZA65_RS08400 0.87 -0.8
1,773,396 - DZA65_RS08400 0.87 +1.1
1,773,396 - DZA65_RS08400 0.87 -0.4
1,773,396 - DZA65_RS08400 0.87 +1.4
1,773,396 - DZA65_RS08400 0.87 -0.8
1,773,435 + DZA65_RS08400 0.89 +0.7
1,773,458 + +0.0
1,773,459 - -0.8
1,773,563 + -0.7
1,773,563 + -1.7
1,773,564 - +0.6
1,773,650 - -0.4
1,773,704 - DZA65_RS08405 0.13 -0.8
1,773,704 - DZA65_RS08405 0.13 +0.3
1,773,747 + DZA65_RS08405 0.19 -1.3
1,773,774 + DZA65_RS08405 0.23 +0.0
1,773,803 + DZA65_RS08405 0.28 +0.5
1,773,813 - DZA65_RS08405 0.29 +0.9
1,773,869 + DZA65_RS08405 0.38 -0.4
1,773,869 + DZA65_RS08405 0.38 -1.4
1,773,869 + DZA65_RS08405 0.38 -0.8
1,773,869 + DZA65_RS08405 0.38 +0.2
1,773,869 + DZA65_RS08405 0.38 +0.9
1,773,869 + DZA65_RS08405 0.38 +0.6
1,773,869 + -1.1
1,773,870 - DZA65_RS08405 0.38 +0.2
1,773,870 - DZA65_RS08405 0.38 -0.2
1,773,870 - DZA65_RS08405 0.38 -0.5
1,773,870 - DZA65_RS08405 0.38 +0.0
1,773,870 - DZA65_RS08405 0.38 -1.0
1,773,911 + DZA65_RS08405 0.44 -0.3
1,773,939 - DZA65_RS08405 0.48 -0.9
1,773,939 - DZA65_RS08405 0.48 -1.3
1,773,963 - DZA65_RS08405 0.51 -0.1
1,773,963 - DZA65_RS08405 0.51 -0.3
1,773,964 + DZA65_RS08405 0.52 +0.1
1,773,964 + DZA65_RS08405 0.52 -0.3
1,773,964 + DZA65_RS08405 0.52 +0.1
1,773,964 + DZA65_RS08405 0.52 +1.0
1,773,965 - DZA65_RS08405 0.52 -0.3
1,773,965 - DZA65_RS08405 0.52 -0.1
1,773,965 - DZA65_RS08405 0.52 -0.1
1,773,977 - DZA65_RS08405 0.54 -0.3
1,774,005 + DZA65_RS08405 0.58 +2.9
1,774,062 - DZA65_RS08405 0.66 -0.3
1,774,065 - DZA65_RS08405 0.67 -0.0
1,774,139 + DZA65_RS08405 0.78 +0.5
1,774,175 + DZA65_RS08405 0.83 -0.1
1,774,293 + -0.6
1,774,294 - -0.2
1,774,299 - +0.0
1,774,341 + +0.0
1,774,342 - -1.0
1,774,342 - -0.5
1,774,342 - -2.1
1,774,346 - +0.4
1,774,347 + -0.1
1,774,354 + +0.4
1,774,354 + -1.6
1,774,355 - -0.5
1,774,355 - +0.2
1,774,355 - -1.6
1,774,357 + -0.1
1,774,380 + +0.1
1,774,380 + -0.1
1,774,380 + +0.3
1,774,422 - +0.7
1,774,422 - -1.0
1,774,461 + -0.6
1,774,520 - +0.3
1,774,542 + +0.3
1,774,555 + +2.4
1,774,556 - +0.0
1,774,582 - +0.5
1,774,608 + -0.3
1,774,619 + +0.4

Or see this region's nucleotide sequence