Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07690 and DZA65_RS07695 are separated by 113 nucleotides DZA65_RS07695 and DZA65_RS07700 are separated by 14 nucleotides DZA65_RS07700 and DZA65_RS07705 are separated by 11 nucleotides
DZA65_RS07690: DZA65_RS07690 - Hcp family type VI secretion system effector, at 1,598,387 to 1,598,905
_RS07690
DZA65_RS07695: DZA65_RS07695 - type VI secretion system tip protein VgrG, at 1,599,019 to 1,600,872
_RS07695
DZA65_RS07700: DZA65_RS07700 - DUF1795 domain-containing protein, at 1,600,887 to 1,601,294
_RS07700
DZA65_RS07705: DZA65_RS07705 - type IV secretion protein Rhs, at 1,601,306 to 1,605,265
_RS07705
Position (kb) 1599
1600
1601 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1598.142 kb on - strand at 1598.200 kb on + strand at 1598.387 kb on - strand at 1598.387 kb on - strand at 1598.402 kb on + strand at 1598.402 kb on + strand at 1598.403 kb on - strand at 1598.477 kb on + strand, within DZA65_RS07690 at 1598.477 kb on + strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.631 kb on - strand, within DZA65_RS07690 at 1598.633 kb on - strand, within DZA65_RS07690 at 1598.903 kb on + strand at 1598.903 kb on + strand at 1598.903 kb on + strand at 1598.904 kb on - strand at 1599.211 kb on + strand, within DZA65_RS07695 at 1599.455 kb on - strand, within DZA65_RS07695 at 1599.455 kb on - strand, within DZA65_RS07695 at 1599.523 kb on + strand, within DZA65_RS07695 at 1599.523 kb on + strand, within DZA65_RS07695 at 1599.523 kb on + strand, within DZA65_RS07695 at 1599.524 kb on - strand, within DZA65_RS07695 at 1599.524 kb on - strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.643 kb on + strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.644 kb on - strand, within DZA65_RS07695 at 1599.704 kb on - strand, within DZA65_RS07695 at 1599.724 kb on + strand, within DZA65_RS07695 at 1600.044 kb on - strand, within DZA65_RS07695 at 1600.099 kb on + strand, within DZA65_RS07695 at 1600.099 kb on + strand, within DZA65_RS07695 at 1600.100 kb on - strand, within DZA65_RS07695 at 1600.100 kb on - strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.162 kb on + strand, within DZA65_RS07695 at 1600.163 kb on - strand, within DZA65_RS07695 at 1600.163 kb on - strand, within DZA65_RS07695 at 1600.171 kb on - strand, within DZA65_RS07695 at 1600.542 kb on + strand, within DZA65_RS07695 at 1600.695 kb on + strand at 1600.695 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.886 kb on + strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.887 kb on - strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.890 kb on + strand at 1600.891 kb on - strand at 1600.891 kb on - strand at 1600.891 kb on - strand at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.031 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.133 kb on + strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.134 kb on - strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.135 kb on + strand, within DZA65_RS07700 at 1601.136 kb on - strand, within DZA65_RS07700 at 1601.211 kb on - strand, within DZA65_RS07700 at 1601.318 kb on - strand at 1601.458 kb on + strand at 1601.459 kb on - strand at 1601.589 kb on + strand at 1601.589 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.637 kb on + strand at 1601.638 kb on - strand at 1601.761 kb on + strand, within DZA65_RS07705 at 1601.761 kb on + strand, within DZA65_RS07705 at 1601.857 kb on + strand, within DZA65_RS07705 at 1601.857 kb on + strand, within DZA65_RS07705
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,598,142 - +0.1 1,598,200 + -0.6 1,598,387 - -0.2 1,598,387 - +0.4 1,598,402 + -1.0 1,598,402 + -1.9 1,598,403 - -2.5 1,598,477 + DZA65_RS07690 0.17 -0.8 1,598,477 + DZA65_RS07690 0.17 -0.9 1,598,631 - DZA65_RS07690 0.47 -0.0 1,598,631 - DZA65_RS07690 0.47 +0.5 1,598,631 - DZA65_RS07690 0.47 -1.7 1,598,631 - DZA65_RS07690 0.47 -0.3 1,598,633 - DZA65_RS07690 0.47 -1.0 1,598,903 + -0.4 1,598,903 + -1.0 1,598,903 + +1.0 1,598,904 - -1.2 1,599,211 + DZA65_RS07695 0.10 +0.6 1,599,455 - DZA65_RS07695 0.24 -0.9 1,599,455 - DZA65_RS07695 0.24 -0.6 1,599,523 + DZA65_RS07695 0.27 -0.2 1,599,523 + DZA65_RS07695 0.27 -1.6 1,599,523 + DZA65_RS07695 0.27 -0.2 1,599,524 - DZA65_RS07695 0.27 +0.2 1,599,524 - DZA65_RS07695 0.27 +0.4 1,599,643 + DZA65_RS07695 0.34 +0.1 1,599,643 + DZA65_RS07695 0.34 -0.3 1,599,643 + DZA65_RS07695 0.34 -1.2 1,599,643 + DZA65_RS07695 0.34 -0.0 1,599,643 + DZA65_RS07695 0.34 -0.0 1,599,643 + DZA65_RS07695 0.34 -2.7 1,599,643 + DZA65_RS07695 0.34 -0.4 1,599,643 + DZA65_RS07695 0.34 +0.0 1,599,643 + +2.0 1,599,643 + DZA65_RS07695 0.34 +0.2 1,599,643 + DZA65_RS07695 0.34 -2.7 1,599,643 + DZA65_RS07695 0.34 +0.1 1,599,644 - DZA65_RS07695 0.34 -1.0 1,599,644 - DZA65_RS07695 0.34 -0.8 1,599,644 - DZA65_RS07695 0.34 +0.2 1,599,644 - DZA65_RS07695 0.34 -1.2 1,599,644 - DZA65_RS07695 0.34 +0.2 1,599,644 - DZA65_RS07695 0.34 -0.2 1,599,644 - DZA65_RS07695 0.34 +2.0 1,599,704 - DZA65_RS07695 0.37 -0.0 1,599,724 + DZA65_RS07695 0.38 -0.3 1,600,044 - DZA65_RS07695 0.55 -2.0 1,600,099 + DZA65_RS07695 0.58 -0.8 1,600,099 + DZA65_RS07695 0.58 -0.5 1,600,100 - DZA65_RS07695 0.58 +0.1 1,600,100 - DZA65_RS07695 0.58 -0.7 1,600,162 + DZA65_RS07695 0.62 -0.8 1,600,162 + DZA65_RS07695 0.62 -0.8 1,600,162 + DZA65_RS07695 0.62 +0.2 1,600,163 - DZA65_RS07695 0.62 -0.2 1,600,163 - DZA65_RS07695 0.62 -0.0 1,600,171 - DZA65_RS07695 0.62 -1.0 1,600,542 + DZA65_RS07695 0.82 -0.2 1,600,695 + +1.1 1,600,695 + +0.1 1,600,886 + +1.0 1,600,886 + -0.6 1,600,886 + +1.0 1,600,886 + -0.9 1,600,886 + -0.0 1,600,886 + +0.8 1,600,886 + +1.0 1,600,886 + +0.5 1,600,886 + -0.2 1,600,886 + -0.5 1,600,886 + -0.5 1,600,886 + -0.4 1,600,886 + -0.3 1,600,886 + -0.4 1,600,886 + -0.3 1,600,886 + -0.4 1,600,886 + -0.2 1,600,886 + +0.2 1,600,886 + -0.2 1,600,886 + -2.4 1,600,886 + -1.0 1,600,886 + -0.5 1,600,887 - -0.7 1,600,887 - +1.3 1,600,887 - +0.5 1,600,887 - -0.3 1,600,887 - +0.3 1,600,887 - -0.1 1,600,887 - -0.3 1,600,887 - +0.5 1,600,887 - -0.4 1,600,887 - -0.9 1,600,887 - +0.1 1,600,887 - +1.0 1,600,887 - -1.2 1,600,887 - -0.8 1,600,887 - +0.4 1,600,887 - -0.5 1,600,887 - +0.0 1,600,887 - -0.5 1,600,887 - -0.4 1,600,887 - +2.3 1,600,887 - +0.1 1,600,887 - -0.1 1,600,887 - -0.0 1,600,887 - +0.8 1,600,887 - -0.4 1,600,887 - -0.0 1,600,887 - -2.5 1,600,887 - +0.7 1,600,887 - -0.0 1,600,887 - -0.5 1,600,887 - +0.1 1,600,887 - -0.0 1,600,887 - -1.0 1,600,890 + -0.6 1,600,890 + -0.5 1,600,890 + -1.2 1,600,890 + -0.6 1,600,891 - +1.3 1,600,891 - -0.7 1,600,891 - -0.5 1,601,031 + DZA65_RS07700 0.35 -1.6 1,601,031 + DZA65_RS07700 0.35 -0.5 1,601,031 + DZA65_RS07700 0.35 +0.0 1,601,133 + DZA65_RS07700 0.60 -0.4 1,601,133 + DZA65_RS07700 0.60 -0.5 1,601,133 + DZA65_RS07700 0.60 -0.0 1,601,134 - DZA65_RS07700 0.61 -0.6 1,601,134 - DZA65_RS07700 0.61 -0.2 1,601,134 - DZA65_RS07700 0.61 -0.3 1,601,134 - DZA65_RS07700 0.61 +0.2 1,601,134 - DZA65_RS07700 0.61 -1.0 1,601,134 - DZA65_RS07700 0.61 +0.1 1,601,135 + DZA65_RS07700 0.61 +0.1 1,601,135 + DZA65_RS07700 0.61 -0.5 1,601,135 + DZA65_RS07700 0.61 +0.2 1,601,136 - DZA65_RS07700 0.61 -0.6 1,601,211 - DZA65_RS07700 0.79 -1.0 1,601,318 - -0.0 1,601,458 + +0.4 1,601,459 - +1.1 1,601,589 + -0.4 1,601,589 + +0.1 1,601,637 + -1.2 1,601,637 + -2.3 1,601,637 + +0.7 1,601,637 + -0.0 1,601,638 - -0.6 1,601,761 + DZA65_RS07705 0.11 -0.0 1,601,761 + DZA65_RS07705 0.11 -0.1 1,601,857 + DZA65_RS07705 0.14 +1.0 1,601,857 + DZA65_RS07705 0.14 -1.2
Or see this region's nucleotide sequence