Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07265 and DZA65_RS07270 are separated by 459 nucleotides DZA65_RS07270 and DZA65_RS07275 overlap by 4 nucleotides DZA65_RS07275 and DZA65_RS07280 overlap by 17 nucleotides
DZA65_RS07265: DZA65_RS07265 - AMP nucleosidase, at 1,510,534 to 1,511,991
_RS07265
DZA65_RS07270: DZA65_RS07270 - D-galactonate utilization transcriptional regulator DgoR, at 1,512,451 to 1,513,149
_RS07270
DZA65_RS07275: DZA65_RS07275 - 2-dehydro-3-deoxygalactonokinase, at 1,513,146 to 1,514,042
_RS07275
DZA65_RS07280: DZA65_RS07280 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 1,514,026 to 1,514,643
_RS07280
Position (kb) 1512
1513
1514 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1511.459 kb on - strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.615 kb on + strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.616 kb on - strand, within DZA65_RS07265 at 1511.622 kb on - strand, within DZA65_RS07265 at 1511.666 kb on + strand, within DZA65_RS07265 at 1511.666 kb on + strand, within DZA65_RS07265 at 1511.667 kb on - strand, within DZA65_RS07265 at 1511.667 kb on - strand, within DZA65_RS07265 at 1511.702 kb on + strand, within DZA65_RS07265 at 1511.702 kb on + strand, within DZA65_RS07265 at 1511.702 kb on + strand, within DZA65_RS07265 at 1511.703 kb on - strand, within DZA65_RS07265 at 1511.703 kb on - strand, within DZA65_RS07265 at 1511.768 kb on + strand, within DZA65_RS07265 at 1511.769 kb on - strand, within DZA65_RS07265 at 1511.769 kb on - strand, within DZA65_RS07265 at 1511.880 kb on + strand at 1511.883 kb on + strand at 1511.883 kb on + strand at 1511.883 kb on + strand at 1511.884 kb on - strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.927 kb on + strand at 1511.928 kb on - strand at 1511.928 kb on - strand at 1511.928 kb on - strand at 1512.196 kb on + strand at 1512.196 kb on + strand at 1512.196 kb on + strand at 1512.196 kb on + strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.197 kb on - strand at 1512.202 kb on + strand at 1512.202 kb on + strand at 1512.202 kb on + strand at 1512.202 kb on + strand at 1512.203 kb on - strand at 1512.203 kb on - strand at 1512.220 kb on - strand at 1512.408 kb on + strand at 1512.408 kb on + strand at 1512.408 kb on + strand at 1512.408 kb on + strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.409 kb on - strand at 1512.420 kb on + strand at 1512.421 kb on - strand at 1512.457 kb on - strand at 1512.523 kb on + strand, within DZA65_RS07270 at 1512.686 kb on - strand, within DZA65_RS07270 at 1512.727 kb on + strand, within DZA65_RS07270 at 1512.728 kb on - strand, within DZA65_RS07270 at 1512.765 kb on + strand, within DZA65_RS07270 at 1512.933 kb on + strand, within DZA65_RS07270 at 1512.944 kb on + strand, within DZA65_RS07270 at 1512.945 kb on - strand, within DZA65_RS07270 at 1512.945 kb on - strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.000 kb on + strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.001 kb on - strand, within DZA65_RS07270 at 1513.002 kb on + strand, within DZA65_RS07270 at 1513.002 kb on + strand, within DZA65_RS07270 at 1513.003 kb on - strand, within DZA65_RS07270 at 1513.054 kb on + strand, within DZA65_RS07270 at 1513.054 kb on + strand, within DZA65_RS07270 at 1513.054 kb on + strand, within DZA65_RS07270 at 1513.055 kb on - strand, within DZA65_RS07270 at 1513.055 kb on - strand, within DZA65_RS07270 at 1513.077 kb on + strand, within DZA65_RS07270 at 1513.078 kb on - strand, within DZA65_RS07270 at 1513.133 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.143 kb on + strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.144 kb on - strand at 1513.158 kb on + strand at 1513.158 kb on + strand at 1513.158 kb on + strand at 1513.158 kb on + strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.159 kb on - strand at 1513.377 kb on + strand, within DZA65_RS07275 at 1513.377 kb on + strand, within DZA65_RS07275 at 1513.378 kb on - strand, within DZA65_RS07275 at 1513.378 kb on - strand, within DZA65_RS07275 at 1513.378 kb on - strand at 1513.476 kb on - strand, within DZA65_RS07275 at 1513.476 kb on - strand, within DZA65_RS07275 at 1513.490 kb on + strand, within DZA65_RS07275 at 1513.536 kb on + strand, within DZA65_RS07275 at 1513.560 kb on + strand, within DZA65_RS07275 at 1513.560 kb on + strand, within DZA65_RS07275 at 1513.560 kb on + strand, within DZA65_RS07275 at 1513.561 kb on - strand, within DZA65_RS07275 at 1513.561 kb on - strand, within DZA65_RS07275 at 1513.672 kb on + strand, within DZA65_RS07275 at 1513.878 kb on + strand, within DZA65_RS07275 at 1513.878 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.951 kb on + strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.952 kb on - strand, within DZA65_RS07275 at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.981 kb on + strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1513.982 kb on - strand at 1514.011 kb on + strand at 1514.012 kb on - strand at 1514.012 kb on - strand at 1514.037 kb on + strand at 1514.038 kb on - strand at 1514.038 kb on - strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.040 kb on + strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand at 1514.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,511,459 - DZA65_RS07265 0.63 -0.5 1,511,615 + DZA65_RS07265 0.74 -0.6 1,511,615 + DZA65_RS07265 0.74 +0.3 1,511,615 + DZA65_RS07265 0.74 +0.5 1,511,615 + DZA65_RS07265 0.74 +0.1 1,511,615 + DZA65_RS07265 0.74 -0.2 1,511,615 + DZA65_RS07265 0.74 -1.5 1,511,615 + DZA65_RS07265 0.74 +0.6 1,511,616 - DZA65_RS07265 0.74 -0.1 1,511,616 - DZA65_RS07265 0.74 -2.1 1,511,616 - DZA65_RS07265 0.74 -0.0 1,511,616 - DZA65_RS07265 0.74 -0.0 1,511,616 - DZA65_RS07265 0.74 -1.2 1,511,616 - DZA65_RS07265 0.74 -1.2 1,511,616 - DZA65_RS07265 0.74 -0.6 1,511,616 - DZA65_RS07265 0.74 -0.6 1,511,622 - DZA65_RS07265 0.75 +0.6 1,511,666 + DZA65_RS07265 0.78 -0.6 1,511,666 + DZA65_RS07265 0.78 -0.9 1,511,667 - DZA65_RS07265 0.78 -0.0 1,511,667 - DZA65_RS07265 0.78 -0.7 1,511,702 + DZA65_RS07265 0.80 -0.8 1,511,702 + DZA65_RS07265 0.80 +0.3 1,511,702 + DZA65_RS07265 0.80 -0.8 1,511,703 - DZA65_RS07265 0.80 -0.0 1,511,703 - DZA65_RS07265 0.80 +0.7 1,511,768 + DZA65_RS07265 0.85 -1.0 1,511,769 - DZA65_RS07265 0.85 -0.6 1,511,769 - DZA65_RS07265 0.85 -0.2 1,511,880 + +1.0 1,511,883 + -0.5 1,511,883 + -2.6 1,511,883 + +0.3 1,511,884 - +0.2 1,511,927 + -0.8 1,511,927 + -0.3 1,511,927 + -1.0 1,511,927 + +0.2 1,511,927 + -1.6 1,511,927 + +0.1 1,511,928 - +2.0 1,511,928 - +0.8 1,511,928 - -0.6 1,512,196 + -0.8 1,512,196 + +0.1 1,512,196 + -0.0 1,512,196 + -0.2 1,512,197 - -0.6 1,512,197 - +0.2 1,512,197 - -0.0 1,512,197 - +0.2 1,512,197 - -1.0 1,512,197 - -0.1 1,512,197 - -1.2 1,512,202 + -1.0 1,512,202 + +0.6 1,512,202 + -1.2 1,512,202 + -0.2 1,512,203 - +0.9 1,512,203 - -1.6 1,512,220 - -0.5 1,512,408 + +1.3 1,512,408 + -1.1 1,512,408 + -1.4 1,512,408 + -0.9 1,512,409 - +0.5 1,512,409 - -0.2 1,512,409 - -0.5 1,512,409 - -0.0 1,512,409 - +0.4 1,512,409 - -0.4 1,512,420 + -2.2 1,512,421 - -1.2 1,512,457 - -0.6 1,512,523 + DZA65_RS07270 0.10 -0.0 1,512,686 - DZA65_RS07270 0.34 -1.2 1,512,727 + DZA65_RS07270 0.39 -1.3 1,512,728 - DZA65_RS07270 0.40 -2.2 1,512,765 + DZA65_RS07270 0.45 +0.2 1,512,933 + DZA65_RS07270 0.69 -1.6 1,512,944 + DZA65_RS07270 0.71 -0.3 1,512,945 - DZA65_RS07270 0.71 -2.0 1,512,945 - DZA65_RS07270 0.71 -2.7 1,513,000 + DZA65_RS07270 0.79 -1.0 1,513,000 + DZA65_RS07270 0.79 +0.7 1,513,000 + DZA65_RS07270 0.79 -1.0 1,513,000 + DZA65_RS07270 0.79 -0.3 1,513,000 + DZA65_RS07270 0.79 -0.8 1,513,000 + DZA65_RS07270 0.79 -0.1 1,513,000 + DZA65_RS07270 0.79 -0.6 1,513,000 + DZA65_RS07270 0.79 -0.1 1,513,000 + DZA65_RS07270 0.79 -0.9 1,513,000 + DZA65_RS07270 0.79 -1.0 1,513,000 + DZA65_RS07270 0.79 +1.0 1,513,000 + DZA65_RS07270 0.79 -2.3 1,513,000 + DZA65_RS07270 0.79 -0.0 1,513,000 + DZA65_RS07270 0.79 -1.0 1,513,001 - DZA65_RS07270 0.79 +0.3 1,513,001 - DZA65_RS07270 0.79 -0.6 1,513,001 - DZA65_RS07270 0.79 +0.4 1,513,001 - DZA65_RS07270 0.79 +0.6 1,513,001 - DZA65_RS07270 0.79 -1.0 1,513,001 - DZA65_RS07270 0.79 -1.2 1,513,001 - DZA65_RS07270 0.79 -0.9 1,513,001 - DZA65_RS07270 0.79 -0.7 1,513,001 - DZA65_RS07270 0.79 -1.1 1,513,001 - DZA65_RS07270 0.79 +0.1 1,513,001 - DZA65_RS07270 0.79 -1.8 1,513,001 - DZA65_RS07270 0.79 -0.3 1,513,001 - DZA65_RS07270 0.79 +0.3 1,513,001 - DZA65_RS07270 0.79 -0.3 1,513,001 - DZA65_RS07270 0.79 +0.6 1,513,001 - DZA65_RS07270 0.79 -0.0 1,513,002 + DZA65_RS07270 0.79 -1.2 1,513,002 + DZA65_RS07270 0.79 -1.0 1,513,003 - DZA65_RS07270 0.79 +1.0 1,513,054 + DZA65_RS07270 0.86 -0.8 1,513,054 + DZA65_RS07270 0.86 -1.1 1,513,054 + DZA65_RS07270 0.86 -0.5 1,513,055 - DZA65_RS07270 0.86 -0.6 1,513,055 - DZA65_RS07270 0.86 +1.0 1,513,077 + DZA65_RS07270 0.90 -1.0 1,513,078 - DZA65_RS07270 0.90 -0.9 1,513,133 + -0.5 1,513,143 + +0.3 1,513,143 + +0.2 1,513,143 + -0.4 1,513,143 + -1.0 1,513,143 + +0.6 1,513,143 + +0.8 1,513,143 + +0.4 1,513,143 + +1.3 1,513,143 + -0.6 1,513,144 - +0.3 1,513,144 - -0.2 1,513,144 - +0.3 1,513,144 - -0.1 1,513,144 - +0.1 1,513,144 - -0.3 1,513,144 - +0.2 1,513,144 - -0.0 1,513,144 - -1.5 1,513,144 - -0.5 1,513,158 + -1.0 1,513,158 + +0.2 1,513,158 + -0.4 1,513,158 + -0.6 1,513,159 - +0.5 1,513,159 - -0.9 1,513,159 - +0.7 1,513,159 - +0.2 1,513,159 - -0.2 1,513,159 - -2.0 1,513,159 - -1.1 1,513,159 - +0.1 1,513,159 - -0.0 1,513,159 - -1.1 1,513,159 - -0.8 1,513,159 - -0.1 1,513,377 + DZA65_RS07275 0.26 +0.1 1,513,377 + DZA65_RS07275 0.26 +0.0 1,513,378 - DZA65_RS07275 0.26 -0.8 1,513,378 - DZA65_RS07275 0.26 -0.3 1,513,378 - +0.6 1,513,476 - DZA65_RS07275 0.37 -1.3 1,513,476 - DZA65_RS07275 0.37 +0.5 1,513,490 + DZA65_RS07275 0.38 -0.2 1,513,536 + DZA65_RS07275 0.43 +0.1 1,513,560 + DZA65_RS07275 0.46 -0.5 1,513,560 + DZA65_RS07275 0.46 -0.6 1,513,560 + DZA65_RS07275 0.46 +0.2 1,513,561 - DZA65_RS07275 0.46 +0.6 1,513,561 - DZA65_RS07275 0.46 -0.2 1,513,672 + DZA65_RS07275 0.59 -1.6 1,513,878 + DZA65_RS07275 0.82 +0.1 1,513,878 + DZA65_RS07275 0.82 -0.6 1,513,951 + DZA65_RS07275 0.90 -1.3 1,513,951 + DZA65_RS07275 0.90 +0.6 1,513,951 + DZA65_RS07275 0.90 -1.1 1,513,951 + DZA65_RS07275 0.90 +1.0 1,513,952 - DZA65_RS07275 0.90 -0.5 1,513,952 - DZA65_RS07275 0.90 -0.1 1,513,952 - DZA65_RS07275 0.90 +1.3 1,513,981 + -0.1 1,513,981 + -0.3 1,513,981 + -1.0 1,513,981 + -0.8 1,513,981 + -0.5 1,513,981 + +0.2 1,513,982 - +0.3 1,513,982 - -0.6 1,513,982 - +1.3 1,513,982 - +0.4 1,513,982 - -0.9 1,513,982 - -1.3 1,513,982 - +0.5 1,514,011 + -0.6 1,514,012 - +0.4 1,514,012 - -0.4 1,514,037 + -0.0 1,514,038 - -0.9 1,514,038 - -0.3 1,514,040 + +0.1 1,514,040 + +0.2 1,514,040 + +0.3 1,514,040 + -0.5 1,514,040 + +1.0 1,514,041 - -0.1 1,514,041 - +0.9 1,514,041 - -0.8 1,514,041 - +1.3 1,514,041 - -1.2 1,514,041 - -0.0 1,514,041 - -0.9
Or see this region's nucleotide sequence