Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07145 and DZA65_RS07150 are separated by 141 nucleotides DZA65_RS07150 and DZA65_RS22735 are separated by 102 nucleotides
DZA65_RS07145: DZA65_RS07145 - glycosyltransferase family 2 protein, at 1,483,643 to 1,484,551
_RS07145
DZA65_RS07150: DZA65_RS07150 - hypothetical protein, at 1,484,693 to 1,486,252
_RS07150
DZA65_RS22735: DZA65_RS22735 - hypothetical protein, at 1,486,355 to 1,487,572
_RS22735
Position (kb)
1484
1485
1486
1487 Strain fitness (log2 ratio)
-1
0
1 at 1484.726 kb on + strand at 1484.854 kb on + strand, within DZA65_RS07150 at 1484.859 kb on + strand, within DZA65_RS07150 at 1484.864 kb on - strand, within DZA65_RS07150 at 1485.301 kb on - strand, within DZA65_RS07150 at 1485.359 kb on + strand, within DZA65_RS07150 at 1485.359 kb on + strand, within DZA65_RS07150 at 1485.360 kb on - strand, within DZA65_RS07150 at 1485.437 kb on + strand at 1485.574 kb on + strand, within DZA65_RS07150 at 1485.598 kb on + strand, within DZA65_RS07150 at 1485.640 kb on - strand, within DZA65_RS07150 at 1485.686 kb on - strand, within DZA65_RS07150 at 1485.716 kb on - strand, within DZA65_RS07150 at 1485.917 kb on - strand, within DZA65_RS07150 at 1486.124 kb on + strand at 1486.125 kb on - strand at 1486.177 kb on + strand at 1486.222 kb on - strand at 1486.222 kb on - strand at 1486.381 kb on + strand at 1486.561 kb on - strand, within DZA65_RS22735 at 1486.694 kb on + strand, within DZA65_RS22735 at 1486.804 kb on - strand, within DZA65_RS22735 at 1487.003 kb on - strand, within DZA65_RS22735
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,484,726 + +0.0 1,484,854 + DZA65_RS07150 0.10 -0.9 1,484,859 + DZA65_RS07150 0.11 +0.3 1,484,864 - DZA65_RS07150 0.11 +0.7 1,485,301 - DZA65_RS07150 0.39 -1.0 1,485,359 + DZA65_RS07150 0.43 +0.2 1,485,359 + DZA65_RS07150 0.43 +0.1 1,485,360 - DZA65_RS07150 0.43 +1.4 1,485,437 + -0.3 1,485,574 + DZA65_RS07150 0.56 -0.5 1,485,598 + DZA65_RS07150 0.58 +0.7 1,485,640 - DZA65_RS07150 0.61 -0.4 1,485,686 - DZA65_RS07150 0.64 +0.9 1,485,716 - DZA65_RS07150 0.66 +0.3 1,485,917 - DZA65_RS07150 0.78 -0.6 1,486,124 + +0.1 1,486,125 - -0.8 1,486,177 + -0.7 1,486,222 - -0.1 1,486,222 - -0.6 1,486,381 + +1.0 1,486,561 - DZA65_RS22735 0.17 -0.2 1,486,694 + DZA65_RS22735 0.28 -1.7 1,486,804 - DZA65_RS22735 0.37 -0.6 1,487,003 - DZA65_RS22735 0.53 -0.2
Or see this region's nucleotide sequence